Wall clock time and date at job start Mon Mar 30 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99551 * 2 1 4 4 O 1.20827 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99783 * 180.02562 * 3 2 1 6 6 C 1.52995 * 115.54886 * 297.33280 * 5 3 2 7 7 N 1.46908 * 109.47157 * 42.65516 * 6 5 3 8 8 C 1.48534 * 110.99954 * 60.75989 * 7 6 5 9 9 C 1.54936 * 103.22300 * 159.72448 * 8 7 6 10 10 C 1.54593 * 102.92294 * 322.58109 * 9 8 7 11 11 O 1.42900 * 110.39541 * 263.00135 * 10 9 8 12 12 C 1.50700 * 110.30639 * 140.87945 * 10 9 8 13 13 H 1.08009 * 119.99894 * 244.28344 * 12 10 9 14 14 C 1.37874 * 120.00568 * 64.28623 * 12 10 9 15 15 N 1.31514 * 119.99636 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00383 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47074 * 60.00046 * 16 14 12 18 18 H 1.48503 * 109.46978 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46870 * 300.00154 * 16 14 12 20 20 C 1.47906 * 111.00171 * 178.15864 * 7 6 5 21 21 C 1.52997 * 117.51874 * 83.03488 * 5 3 2 22 22 C 1.53003 * 117.49915 * 151.66576 * 5 3 2 23 23 H 1.09001 * 109.46589 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47173 * 299.99884 * 1 2 3 25 25 H 1.08991 * 109.47012 * 60.00269 * 1 2 3 26 26 H 1.09003 * 109.47658 * 282.65400 * 6 5 3 27 27 H 1.08999 * 109.47604 * 162.65273 * 6 5 3 28 28 H 1.09003 * 110.66134 * 278.15522 * 8 7 6 29 29 H 1.08995 * 110.66528 * 41.28365 * 8 7 6 30 30 H 1.09004 * 110.71557 * 204.22606 * 9 8 7 31 31 H 1.08996 * 110.88038 * 81.01849 * 9 8 7 32 32 H 0.96695 * 114.00078 * 295.76955 * 11 10 9 33 33 H 0.97004 * 120.00232 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.91357 * 333.50867 * 20 7 6 35 35 H 1.09001 * 109.91874 * 94.59939 * 20 7 6 36 36 H 1.08997 * 117.49908 * 214.96855 * 21 5 3 37 37 H 1.09002 * 117.50039 * 359.97438 * 21 5 3 38 38 H 1.08999 * 117.49552 * 359.97438 * 22 5 3 39 39 H 1.08997 * 117.49638 * 144.99277 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2590 0.6763 1.2253 7 7 3.6171 -0.5974 1.5771 8 6 3.7260 -1.5739 0.4631 9 6 3.5022 -2.9374 1.1640 10 6 4.2220 -2.7517 2.5195 11 8 5.5389 -3.3037 2.4638 12 6 3.4302 -3.4006 3.6253 13 1 3.0083 -2.7955 4.4143 14 6 3.2441 -4.7667 3.6301 15 7 3.7573 -5.5035 2.6692 16 14 2.2620 -5.5710 5.0005 17 1 0.8826 -5.0211 5.0093 18 1 2.2082 -7.0379 4.7758 19 1 2.9140 -5.2931 6.3054 20 6 4.2896 -1.2283 2.7335 21 6 4.2804 1.1479 -1.3477 22 6 4.2090 2.5050 -0.6447 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 4.1766 1.3684 2.0634 27 1 5.3111 0.5028 0.9996 28 1 2.9525 -1.3935 -0.2834 29 1 4.7165 -1.5319 0.0103 30 1 3.9595 -3.7447 0.5918 31 1 2.4395 -3.1272 1.3143 32 1 5.5586 -4.2612 2.3302 33 1 3.6268 -6.4648 2.6727 34 1 5.3297 -0.9056 2.7795 35 1 3.7757 -0.9566 3.6556 36 1 5.2436 0.6379 -1.3607 37 1 3.6617 1.0068 -2.2340 38 1 3.5433 3.2569 -1.0684 39 1 5.1252 2.8877 -0.1951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:44 Heat of formation + Delta-G solvation = -96.635155 kcal Electronic energy + Delta-G solvation = -22010.699854 eV Core-core repulsion = 18726.661187 eV Total energy + Delta-G solvation = -3284.038667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52065 -38.45981 -37.18029 -35.94337 -34.36817 -32.03452 -30.06083 -28.14956 -27.68528 -26.01962 -24.07302 -23.28566 -22.50140 -20.54241 -19.44928 -19.27889 -17.15144 -17.04193 -16.63588 -16.14170 -14.97549 -14.87303 -14.62594 -14.30576 -14.00724 -13.78211 -13.59872 -12.92401 -12.57471 -12.23816 -12.06193 -11.85363 -11.62948 -11.58631 -11.35972 -11.14844 -11.00079 -10.65066 -10.53464 -10.47890 -10.46217 -10.19671 -10.15610 -9.97525 -9.83372 -9.10977 -8.54771 -8.04718 -7.72538 -6.16271 -4.21865 2.37721 2.90187 3.27557 3.31847 3.35457 3.60914 4.30608 4.37075 4.68165 4.79619 4.96547 5.01952 5.14976 5.31275 5.41413 5.48978 5.58995 5.69113 5.72547 5.76546 5.87701 5.91904 5.96912 6.15516 6.23097 6.34144 6.45129 6.62367 6.71627 6.98261 7.17095 7.35668 7.58690 7.73274 7.73525 7.89042 8.04019 8.20793 8.79150 9.44863 9.56732 10.91383 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.005832 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.732703 B = 4800.072243 C = 5351.548071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.319 6.319 3 C 0.515 3.485 4 O -0.523 6.523 5 C -0.128 4.128 6 C 0.087 3.913 7 N -0.507 5.507 8 C 0.036 3.964 9 C -0.115 4.115 10 C 0.244 3.756 11 O -0.596 6.596 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.055 3.945 21 C -0.154 4.154 22 C -0.144 4.144 23 H 0.101 0.899 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.383 0.617 33 H 0.267 0.733 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 9.998 -7.763 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.234 6.234 3 C 0.359 3.641 4 O -0.412 6.412 5 C -0.130 4.130 6 C -0.042 4.042 7 N -0.232 5.232 8 C -0.091 4.091 9 C -0.154 4.154 10 C 0.204 3.796 11 O -0.406 6.406 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.073 4.073 21 C -0.191 4.191 22 C -0.181 4.181 23 H 0.119 0.881 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.516 10.823 -7.600 13.311 hybrid contribution -0.122 -1.221 0.517 1.332 sum -1.638 9.601 -7.083 12.043 Atomic orbital electron populations 1.23238 0.77340 1.03672 1.01668 1.86725 1.22200 1.31742 1.82702 1.22135 0.89649 0.81402 0.70936 1.90613 1.66886 1.36893 1.46837 1.21020 0.88563 1.05663 0.97718 1.21754 0.94934 0.93615 0.93890 1.64847 1.50669 1.01982 1.05665 1.23365 0.98460 0.93496 0.93795 1.22928 1.01630 0.93270 0.97560 1.19334 0.80706 0.87507 0.92096 1.86073 1.30116 1.28314 1.96109 1.21667 1.32879 0.92411 1.09506 0.92139 1.24996 0.95220 0.97277 0.95830 1.69612 1.45903 1.06230 1.32368 0.86540 0.80524 0.77975 0.82267 1.20164 1.21252 1.20193 1.22847 0.95666 0.95504 0.93257 1.23183 1.02159 0.99948 0.93777 1.23101 1.02237 0.91040 1.01758 0.88084 0.92090 0.92757 0.90356 0.93577 0.90255 0.95455 0.92027 0.91496 0.76522 0.92354 0.94718 0.90474 0.87370 0.88261 0.87676 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.53 16 2 O -0.32 -5.22 7.00 -39.25 -0.27 -5.50 16 3 C 0.52 8.41 7.00 36.01 0.25 8.67 16 4 O -0.52 -9.34 16.38 -18.75 -0.31 -9.65 16 5 C -0.13 -1.81 1.59 -155.66 -0.25 -2.06 16 6 C 0.09 1.36 4.82 -3.82 -0.02 1.35 16 7 N -0.51 -9.72 4.31 -230.45 -0.99 -10.72 16 8 C 0.04 0.70 5.23 -1.90 -0.01 0.69 16 9 C -0.12 -2.66 5.49 -24.87 -0.14 -2.80 16 10 C 0.24 6.05 0.99 -90.42 -0.09 5.96 16 11 O -0.60 -15.54 12.93 -35.23 -0.46 -16.00 16 12 C -0.53 -14.17 8.10 -34.44 -0.28 -14.45 16 13 H 0.06 1.63 7.35 -52.48 -0.39 1.24 16 14 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 15 N -0.90 -24.05 10.88 55.43 0.60 -23.45 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.05 1.19 6.17 -2.75 -0.02 1.17 16 21 C -0.15 -1.74 9.71 -26.73 -0.26 -2.00 16 22 C -0.14 -1.59 9.77 -26.73 -0.26 -1.85 16 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.69 7.83 -51.93 -0.41 0.28 16 28 H 0.08 1.45 5.71 -51.93 -0.30 1.15 16 29 H 0.03 0.52 7.99 -51.93 -0.41 0.10 16 30 H 0.06 1.48 8.06 -51.93 -0.42 1.06 16 31 H 0.07 1.65 7.85 -51.93 -0.41 1.24 16 32 H 0.38 10.18 7.05 45.56 0.32 10.50 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.03 0.74 7.52 -51.93 -0.39 0.35 16 35 H 0.08 1.71 7.40 -51.93 -0.38 1.32 16 36 H 0.11 1.15 8.11 -51.93 -0.42 0.72 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.16 7.94 -51.93 -0.41 0.75 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -29.39 317.02 -7.05 -36.44 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.29 Total: 10.40 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.09 Total: -2.09 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.39 Total: -34.17 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.04 Total: -31.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.39 -7.05 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.194 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds