Wall clock time and date at job start Mon Mar 30 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99551 * 2 1 4 4 O 1.20827 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99783 * 180.02562 * 3 2 1 6 6 C 1.52995 * 115.54886 * 297.33280 * 5 3 2 7 7 N 1.46908 * 109.47157 * 42.65516 * 6 5 3 8 8 C 1.48534 * 110.99954 * 60.75989 * 7 6 5 9 9 C 1.54936 * 103.22300 * 159.72448 * 8 7 6 10 10 C 1.54593 * 102.92294 * 322.58109 * 9 8 7 11 11 O 1.42900 * 110.39541 * 263.00135 * 10 9 8 12 12 C 1.50700 * 110.30639 * 140.87945 * 10 9 8 13 13 H 1.08009 * 119.99894 * 244.28344 * 12 10 9 14 14 C 1.37874 * 120.00568 * 64.28623 * 12 10 9 15 15 N 1.31514 * 119.99636 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00383 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47074 * 60.00046 * 16 14 12 18 18 H 1.48503 * 109.46978 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46870 * 300.00154 * 16 14 12 20 20 C 1.47906 * 111.00171 * 178.15864 * 7 6 5 21 21 C 1.52997 * 117.51874 * 83.03488 * 5 3 2 22 22 C 1.53003 * 117.49915 * 151.66576 * 5 3 2 23 23 H 1.09001 * 109.46589 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47173 * 299.99884 * 1 2 3 25 25 H 1.08991 * 109.47012 * 60.00269 * 1 2 3 26 26 H 1.09003 * 109.47658 * 282.65400 * 6 5 3 27 27 H 1.08999 * 109.47604 * 162.65273 * 6 5 3 28 28 H 1.09003 * 110.66134 * 278.15522 * 8 7 6 29 29 H 1.08995 * 110.66528 * 41.28365 * 8 7 6 30 30 H 1.09004 * 110.71557 * 204.22606 * 9 8 7 31 31 H 1.08996 * 110.88038 * 81.01849 * 9 8 7 32 32 H 0.96695 * 114.00078 * 295.76955 * 11 10 9 33 33 H 0.97004 * 120.00232 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.91357 * 333.50867 * 20 7 6 35 35 H 1.09001 * 109.91874 * 94.59939 * 20 7 6 36 36 H 1.08997 * 117.49908 * 214.96855 * 21 5 3 37 37 H 1.09002 * 117.50039 * 359.97438 * 21 5 3 38 38 H 1.08999 * 117.49552 * 359.97438 * 22 5 3 39 39 H 1.08997 * 117.49638 * 144.99277 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2590 0.6763 1.2253 7 7 3.6171 -0.5974 1.5771 8 6 3.7260 -1.5739 0.4631 9 6 3.5022 -2.9374 1.1640 10 6 4.2220 -2.7517 2.5195 11 8 5.5389 -3.3037 2.4638 12 6 3.4302 -3.4006 3.6253 13 1 3.0083 -2.7955 4.4143 14 6 3.2441 -4.7667 3.6301 15 7 3.7573 -5.5035 2.6692 16 14 2.2620 -5.5710 5.0005 17 1 0.8826 -5.0211 5.0093 18 1 2.2082 -7.0379 4.7758 19 1 2.9140 -5.2931 6.3054 20 6 4.2896 -1.2283 2.7335 21 6 4.2804 1.1479 -1.3477 22 6 4.2090 2.5050 -0.6447 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 4.1766 1.3684 2.0634 27 1 5.3111 0.5028 0.9996 28 1 2.9525 -1.3935 -0.2834 29 1 4.7165 -1.5319 0.0103 30 1 3.9595 -3.7447 0.5918 31 1 2.4395 -3.1272 1.3143 32 1 5.5586 -4.2612 2.3302 33 1 3.6268 -6.4648 2.6727 34 1 5.3297 -0.9056 2.7795 35 1 3.7757 -0.9566 3.6556 36 1 5.2436 0.6379 -1.3607 37 1 3.6617 1.0068 -2.2340 38 1 3.5433 3.2569 -1.0684 39 1 5.1252 2.8877 -0.1951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:44 Heat of formation + Delta-G solvation = -116.408943 kcal Electronic energy + Delta-G solvation = -22011.557310 eV Core-core repulsion = 18726.661187 eV Total energy + Delta-G solvation = -3284.896123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72032 -40.03372 -38.42155 -37.26418 -36.04632 -34.09227 -31.68262 -29.81232 -28.93186 -27.56884 -25.77412 -24.51969 -23.39257 -22.12583 -21.18397 -20.60881 -19.07994 -18.33765 -17.86846 -17.33727 -16.86845 -16.45709 -16.08843 -15.70092 -15.50972 -15.11542 -15.08148 -14.11701 -14.08283 -13.93421 -13.50229 -13.38742 -13.12827 -13.02453 -12.73776 -12.69882 -12.48338 -12.36024 -12.32088 -12.09157 -11.82343 -11.65469 -11.53128 -11.38526 -11.02201 -11.00598 -10.57139 -10.03571 -9.24080 -8.18553 -6.31423 1.17531 1.42865 1.43264 1.51134 1.82498 2.41050 2.61968 3.01325 3.14241 3.65562 3.74185 3.85377 3.91400 4.00801 4.31114 4.36676 4.37476 4.41894 4.48771 4.61418 4.66994 4.69447 4.73035 4.74916 4.82109 4.92808 5.02646 5.14848 5.16626 5.39599 5.48154 5.50618 5.67112 5.81163 6.06228 6.18865 6.27347 6.72289 6.83037 7.38325 7.49142 8.87234 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.005832 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.732703 B = 4800.072243 C = 5351.548071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.337 6.337 3 C 0.512 3.488 4 O -0.545 6.545 5 C -0.156 4.156 6 C 0.089 3.911 7 N -0.513 5.513 8 C 0.053 3.947 9 C -0.107 4.107 10 C 0.227 3.773 11 O -0.602 6.602 12 C -0.553 4.553 13 H 0.051 0.949 14 C 0.029 3.971 15 N -0.914 5.914 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.276 1.276 20 C 0.063 3.937 21 C -0.141 4.141 22 C -0.123 4.123 23 H 0.116 0.884 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.378 0.622 33 H 0.269 0.731 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 10.849 -8.470 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.251 6.251 3 C 0.357 3.643 4 O -0.437 6.437 5 C -0.157 4.157 6 C -0.039 4.039 7 N -0.237 5.237 8 C -0.074 4.074 9 C -0.146 4.146 10 C 0.188 3.812 11 O -0.411 6.411 12 C -0.591 4.591 13 H 0.069 0.931 14 C -0.171 4.171 15 N -0.555 5.555 16 Si 0.782 3.218 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.065 4.065 21 C -0.178 4.178 22 C -0.161 4.161 23 H 0.134 0.866 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.228 0.772 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.247 11.683 -8.315 14.394 hybrid contribution -0.226 -1.483 0.729 1.667 sum -1.473 10.200 -7.587 12.797 Atomic orbital electron populations 1.23428 0.76061 1.04838 1.02086 1.86688 1.23718 1.32153 1.82573 1.22589 0.90573 0.80982 0.70158 1.90590 1.67626 1.37442 1.47997 1.21031 0.87202 1.08937 0.98554 1.21789 0.95530 0.91650 0.94975 1.64788 1.51158 1.03029 1.04750 1.23193 0.99363 0.91163 0.93643 1.22700 0.99617 0.95116 0.97123 1.19586 0.80082 0.89153 0.92407 1.86063 1.31040 1.27858 1.96182 1.21927 1.33849 0.93096 1.10225 0.93109 1.25649 0.96003 0.97665 0.97791 1.69689 1.46162 1.06395 1.33231 0.85641 0.79157 0.77283 0.79679 1.19967 1.20518 1.20095 1.22646 0.95957 0.93699 0.94183 1.23318 1.02117 1.00032 0.92304 1.23230 1.02368 0.90379 1.00087 0.86615 0.92713 0.91321 0.90008 0.92227 0.88909 0.94535 0.93594 0.93773 0.77200 0.92180 0.94372 0.91447 0.86157 0.87535 0.87644 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.34 -10.67 7.00 -51.38 -0.36 -11.03 16 3 C 0.51 16.01 7.00 71.24 0.50 16.51 16 4 O -0.55 -18.91 16.38 21.96 0.36 -18.55 16 5 C -0.16 -4.03 1.59 -52.93 -0.08 -4.11 16 6 C 0.09 2.59 4.82 86.30 0.42 3.01 16 7 N -0.51 -19.09 4.31 -883.00 -3.81 -22.90 16 8 C 0.05 2.00 5.23 86.65 0.45 2.46 16 9 C -0.11 -4.96 5.49 31.80 0.17 -4.79 16 10 C 0.23 11.38 0.99 -10.66 -0.01 11.36 16 11 O -0.60 -31.61 12.93 -148.98 -1.93 -33.54 16 12 C -0.55 -30.17 8.10 25.60 0.21 -29.96 16 13 H 0.05 2.79 7.35 -2.91 -0.02 2.77 16 14 C 0.03 1.53 5.26 84.65 0.45 1.98 16 15 N -0.91 -49.13 10.88 21.45 0.23 -48.90 16 16 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.06 2.73 6.17 86.44 0.53 3.26 16 21 C -0.14 -2.73 9.71 30.59 0.30 -2.43 16 22 C -0.12 -2.31 9.77 30.60 0.30 -2.01 16 23 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 25 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 1.60 7.83 -2.39 -0.02 1.58 16 28 H 0.09 3.25 5.71 -2.39 -0.01 3.24 16 29 H 0.04 1.30 7.99 -2.39 -0.02 1.29 16 30 H 0.05 2.23 8.06 -2.38 -0.02 2.21 16 31 H 0.04 2.21 7.85 -2.39 -0.02 2.19 16 32 H 0.38 20.37 7.05 -74.06 -0.52 19.84 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.04 1.60 7.52 -2.39 -0.02 1.58 16 35 H 0.07 3.01 7.40 -2.39 -0.02 2.99 16 36 H 0.12 2.07 8.11 -2.39 -0.02 2.06 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.11 2.02 7.94 -2.39 -0.02 2.00 16 39 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -62.47 317.02 1.48 -61.00 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.53 Total: 31.99 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.43 Total: -2.79 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -3.58 Total: -71.80 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -1.93 Total: -63.11 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -62.47 1.48 -61.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.414 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds