Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.02153 * 2 1 4 4 C 1.50768 * 110.04042 * 121.40453 * 2 1 3 5 5 O 1.21277 * 125.42752 * 299.29958 * 4 2 1 6 6 N 1.34302 * 109.15051 * 119.27487 * 4 2 1 7 7 C 1.46500 * 124.85981 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46908 * 90.02565 * 7 6 4 9 9 N 1.46895 * 109.46895 * 180.02562 * 8 7 6 10 10 C 1.46904 * 111.00171 * 169.99912 * 9 8 7 11 11 C 1.46899 * 111.00264 * 293.95597 * 9 8 7 12 12 C 1.46228 * 110.28917 * 0.27080 * 6 4 2 13 13 N 1.46799 * 108.05711 * 359.56113 * 12 6 4 14 14 C 1.34776 * 127.03543 * 180.15846 * 13 12 6 15 15 O 1.21682 * 120.00316 * 180.30985 * 14 13 12 16 16 C 1.46373 * 119.99650 * 0.31076 * 14 13 12 17 17 H 1.07995 * 120.00070 * 353.84818 * 16 14 13 18 18 C 1.40054 * 119.99854 * 173.84887 * 16 14 13 19 19 N 1.30667 * 120.00131 * 6.12740 * 18 16 14 20 20 Si 1.86801 * 119.99705 * 186.13217 * 18 16 14 21 21 H 1.48495 * 109.47241 * 94.98507 * 20 18 16 22 22 H 1.48502 * 109.46626 * 214.98067 * 20 18 16 23 23 H 1.48502 * 109.47368 * 334.97690 * 20 18 16 24 24 H 1.09001 * 109.46618 * 300.04709 * 1 2 3 25 25 H 1.08998 * 109.47256 * 60.04303 * 1 2 3 26 26 H 1.08994 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46294 * 330.02860 * 7 6 4 28 28 H 1.08996 * 109.47513 * 210.02917 * 7 6 4 29 29 H 1.09004 * 109.47159 * 300.00184 * 8 7 6 30 30 H 1.08993 * 109.46968 * 60.00211 * 8 7 6 31 31 H 1.09001 * 109.47009 * 59.99390 * 10 9 8 32 32 H 1.08996 * 109.47660 * 179.97438 * 10 9 8 33 33 H 1.09003 * 109.46811 * 300.00536 * 10 9 8 34 34 H 1.08992 * 109.46916 * 59.99821 * 11 9 8 35 35 H 1.09001 * 109.47541 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46617 * 299.99921 * 11 9 8 37 37 H 1.08993 * 109.75655 * 119.39054 * 12 6 4 38 38 H 1.09003 * 109.75361 * 240.07945 * 12 6 4 39 39 H 0.96995 * 120.00220 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0467 -0.7380 1.2089 5 8 1.8333 -0.4330 2.3631 6 7 2.7805 -1.7875 0.8041 7 6 3.4456 -2.7388 1.6978 8 6 2.4951 -3.8969 2.0083 9 7 3.1617 -4.8505 2.9050 10 6 2.2106 -5.8476 3.4142 11 6 4.2960 -5.4995 2.2340 12 6 2.8256 -1.8414 -0.6565 13 7 2.0337 -0.7207 -1.1779 14 6 1.8175 -0.4122 -2.4719 15 8 1.1400 0.5562 -2.7616 16 6 2.3976 -1.2421 -3.5289 17 1 3.0788 -2.0409 -3.2756 18 6 2.0693 -1.0002 -4.8688 19 7 1.3421 0.0380 -5.1861 20 14 2.6711 -2.1618 -6.2022 21 1 1.6184 -3.1674 -6.4946 22 1 2.9724 -1.3882 -7.4335 23 1 3.9010 -2.8530 -5.7385 24 1 -0.3632 0.5146 0.8896 25 1 -0.3633 0.5131 -0.8903 26 1 -0.3633 -1.0276 0.0005 27 1 3.7199 -2.2354 2.6249 28 1 4.3431 -3.1249 1.2147 29 1 1.5976 -3.5107 2.4915 30 1 2.2207 -4.4002 1.0813 31 1 1.7782 -6.3974 2.5782 32 1 2.7303 -6.5413 4.0750 33 1 1.4174 -5.3439 3.9668 34 1 5.0187 -4.7430 1.9287 35 1 4.7712 -6.2007 2.9200 36 1 3.9392 -6.0368 1.3553 37 1 3.8576 -1.7564 -0.9967 38 1 2.3998 -2.7829 -1.0037 39 1 1.1144 0.2054 -6.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592875439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -44.767433 kcal Electronic energy + Delta-G solvation = -21234.594210 eV Core-core repulsion = 17985.097447 eV Total energy + Delta-G solvation = -3249.496763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45411 -37.79713 -37.29748 -35.71450 -33.75976 -32.57905 -30.44770 -29.58077 -27.78656 -26.36517 -25.20991 -25.02470 -22.76944 -21.26826 -19.88723 -19.23575 -17.07475 -16.39124 -16.22414 -15.68746 -15.37298 -15.10948 -14.90689 -14.60563 -14.33604 -13.89082 -13.46465 -13.37421 -13.15189 -12.74853 -12.57961 -12.31865 -11.99490 -11.91182 -11.82377 -11.68473 -11.54779 -11.34170 -11.08293 -10.99672 -10.92517 -10.57161 -10.30808 -9.52721 -9.01921 -8.81674 -8.55104 -7.86978 -7.50733 -6.38605 -4.84166 2.76243 2.95276 3.04205 3.11874 3.15084 3.85985 3.91880 4.20310 4.37020 4.63088 4.84916 4.94259 4.97841 5.18096 5.32838 5.35788 5.42056 5.45862 5.55224 5.65905 5.68447 5.72735 5.75041 5.80829 5.88828 6.04717 6.17381 6.35179 6.50450 6.63516 6.77638 6.79989 6.83521 7.26744 7.37448 7.86313 8.17371 8.34814 8.83667 9.20389 10.34665 10.54482 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.005396 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.343197 B = 5187.437138 C = 6346.583846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.110 3.890 3 H 0.094 0.906 4 C 0.523 3.477 5 O -0.529 6.529 6 N -0.628 5.628 7 C 0.138 3.862 8 C 0.037 3.963 9 N -0.545 5.545 10 C 0.026 3.974 11 C 0.018 3.982 12 C 0.345 3.655 13 N -0.644 5.644 14 C 0.581 3.419 15 O -0.560 6.560 16 C -0.538 4.538 17 H 0.071 0.929 18 C 0.088 3.912 19 N -0.762 5.762 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -10.843 10.220 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.112 0.888 4 C 0.311 3.689 5 O -0.405 6.405 6 N -0.363 5.363 7 C 0.016 3.984 8 C -0.092 4.092 9 N -0.270 5.270 10 C -0.122 4.122 11 C -0.130 4.130 12 C 0.135 3.865 13 N -0.388 5.388 14 C 0.389 3.611 15 O -0.440 6.440 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.390 5.390 20 Si 0.735 3.265 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.044 -9.776 10.829 15.139 hybrid contribution 0.058 -1.235 -1.363 1.840 sum 4.102 -11.011 9.466 15.089 Atomic orbital electron populations 1.21880 0.92941 1.02129 1.03202 1.21085 0.96399 0.97282 0.85042 0.88831 1.20919 0.77255 0.80595 0.90166 1.90687 1.59765 1.70055 1.19994 1.48461 1.51870 1.28198 1.07819 1.21226 0.94266 0.88874 0.94076 1.22545 0.97904 0.93488 0.95258 1.61905 1.10140 1.17317 1.37619 1.22372 0.95923 0.94659 0.99289 1.22490 0.93984 0.99022 0.97519 1.21093 0.96786 0.92430 0.76193 1.48985 1.55504 1.29278 1.05035 1.18012 0.80823 0.85114 0.77135 1.90635 1.43645 1.30457 1.79280 1.20833 1.29611 1.17219 0.89749 0.91039 1.25715 0.93519 0.94721 0.99311 1.69996 1.27293 1.22801 1.18943 0.86295 0.79702 0.80429 0.80048 1.19681 1.20278 1.18761 0.92188 0.89679 0.93060 0.89026 0.90100 0.90252 0.94084 0.95559 0.91289 0.91256 0.90942 0.91351 0.95356 0.91535 0.91783 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.28 37.16 0.34 -2.41 16 2 C 0.11 2.21 3.62 -68.78 -0.25 1.96 16 3 H 0.09 1.93 8.14 -51.92 -0.42 1.50 16 4 C 0.52 9.71 7.42 -11.16 -0.08 9.62 16 5 O -0.53 -10.76 17.67 5.56 0.10 -10.66 16 6 N -0.63 -10.03 2.93 -177.58 -0.52 -10.55 16 7 C 0.14 1.76 5.91 -4.04 -0.02 1.73 16 8 C 0.04 0.45 5.28 -3.83 -0.02 0.43 16 9 N -0.55 -5.80 5.02 -251.27 -1.26 -7.06 16 10 C 0.03 0.23 9.57 60.07 0.57 0.81 16 11 C 0.02 0.16 9.32 60.06 0.56 0.72 16 12 C 0.34 6.01 6.82 -63.72 -0.43 5.57 16 13 N -0.64 -14.10 3.10 -172.26 -0.53 -14.63 16 14 C 0.58 15.58 7.62 -12.99 -0.10 15.49 16 15 O -0.56 -17.05 14.22 5.21 0.07 -16.98 16 16 C -0.54 -14.08 9.09 -35.63 -0.32 -14.41 16 17 H 0.07 1.69 7.27 -52.49 -0.38 1.31 16 18 C 0.09 2.30 5.49 -17.37 -0.10 2.21 16 19 N -0.76 -21.56 11.85 55.55 0.66 -20.90 16 20 Si 0.91 18.86 29.56 -169.99 -5.03 13.84 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 1.85 6.96 -51.93 -0.36 1.49 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.24 7.98 -51.93 -0.41 0.82 16 28 H 0.08 0.86 6.55 -51.93 -0.34 0.52 16 29 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.07 0.59 6.47 -51.93 -0.34 0.26 16 35 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.27 6.96 8.29 -40.82 -0.34 6.63 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -32.32 326.15 -7.48 -39.80 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.03 Total: 0.51 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 0.15 Total: 21.72 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -1.66 Total: -53.14 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.17 Total: -27.64 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.32 -7.48 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592875439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.972 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds