Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.02153 * 2 1 4 4 C 1.50768 * 110.04042 * 121.40453 * 2 1 3 5 5 O 1.21277 * 125.42752 * 299.29958 * 4 2 1 6 6 N 1.34302 * 109.15051 * 119.27487 * 4 2 1 7 7 C 1.46500 * 124.85981 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46908 * 90.02565 * 7 6 4 9 9 N 1.46895 * 109.46895 * 180.02562 * 8 7 6 10 10 C 1.46904 * 111.00171 * 169.99912 * 9 8 7 11 11 C 1.46899 * 111.00264 * 293.95597 * 9 8 7 12 12 C 1.46228 * 110.28917 * 0.27080 * 6 4 2 13 13 N 1.46799 * 108.05711 * 359.56113 * 12 6 4 14 14 C 1.34776 * 127.03543 * 180.15846 * 13 12 6 15 15 O 1.21682 * 120.00316 * 180.30985 * 14 13 12 16 16 C 1.46373 * 119.99650 * 0.31076 * 14 13 12 17 17 H 1.07995 * 120.00070 * 353.84818 * 16 14 13 18 18 C 1.40054 * 119.99854 * 173.84887 * 16 14 13 19 19 N 1.30667 * 120.00131 * 6.12740 * 18 16 14 20 20 Si 1.86801 * 119.99705 * 186.13217 * 18 16 14 21 21 H 1.48495 * 109.47241 * 94.98507 * 20 18 16 22 22 H 1.48502 * 109.46626 * 214.98067 * 20 18 16 23 23 H 1.48502 * 109.47368 * 334.97690 * 20 18 16 24 24 H 1.09001 * 109.46618 * 300.04709 * 1 2 3 25 25 H 1.08998 * 109.47256 * 60.04303 * 1 2 3 26 26 H 1.08994 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46294 * 330.02860 * 7 6 4 28 28 H 1.08996 * 109.47513 * 210.02917 * 7 6 4 29 29 H 1.09004 * 109.47159 * 300.00184 * 8 7 6 30 30 H 1.08993 * 109.46968 * 60.00211 * 8 7 6 31 31 H 1.09001 * 109.47009 * 59.99390 * 10 9 8 32 32 H 1.08996 * 109.47660 * 179.97438 * 10 9 8 33 33 H 1.09003 * 109.46811 * 300.00536 * 10 9 8 34 34 H 1.08992 * 109.46916 * 59.99821 * 11 9 8 35 35 H 1.09001 * 109.47541 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46617 * 299.99921 * 11 9 8 37 37 H 1.08993 * 109.75655 * 119.39054 * 12 6 4 38 38 H 1.09003 * 109.75361 * 240.07945 * 12 6 4 39 39 H 0.96995 * 120.00220 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0467 -0.7380 1.2089 5 8 1.8333 -0.4330 2.3631 6 7 2.7805 -1.7875 0.8041 7 6 3.4456 -2.7388 1.6978 8 6 2.4951 -3.8969 2.0083 9 7 3.1617 -4.8505 2.9050 10 6 2.2106 -5.8476 3.4142 11 6 4.2960 -5.4995 2.2340 12 6 2.8256 -1.8414 -0.6565 13 7 2.0337 -0.7207 -1.1779 14 6 1.8175 -0.4122 -2.4719 15 8 1.1400 0.5562 -2.7616 16 6 2.3976 -1.2421 -3.5289 17 1 3.0788 -2.0409 -3.2756 18 6 2.0693 -1.0002 -4.8688 19 7 1.3421 0.0380 -5.1861 20 14 2.6711 -2.1618 -6.2022 21 1 1.6184 -3.1674 -6.4946 22 1 2.9724 -1.3882 -7.4335 23 1 3.9010 -2.8530 -5.7385 24 1 -0.3632 0.5146 0.8896 25 1 -0.3633 0.5131 -0.8903 26 1 -0.3633 -1.0276 0.0005 27 1 3.7199 -2.2354 2.6249 28 1 4.3431 -3.1249 1.2147 29 1 1.5976 -3.5107 2.4915 30 1 2.2207 -4.4002 1.0813 31 1 1.7782 -6.3974 2.5782 32 1 2.7303 -6.5413 4.0750 33 1 1.4174 -5.3439 3.9668 34 1 5.0187 -4.7430 1.9287 35 1 4.7712 -6.2007 2.9200 36 1 3.9392 -6.0368 1.3553 37 1 3.8576 -1.7564 -0.9967 38 1 2.3998 -2.7829 -1.0037 39 1 1.1144 0.2054 -6.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592875439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -68.138437 kcal Electronic energy + Delta-G solvation = -21235.607653 eV Core-core repulsion = 17985.097447 eV Total energy + Delta-G solvation = -3250.510206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96902 -39.23172 -38.58998 -37.36309 -35.27619 -34.54668 -32.10759 -30.78494 -28.47410 -28.28141 -26.72576 -26.24073 -24.15224 -22.27614 -21.59525 -20.76260 -18.82558 -17.95009 -17.62425 -17.10612 -16.75968 -16.31361 -16.12993 -15.95427 -15.74252 -15.33538 -15.09223 -14.61636 -14.50230 -14.22025 -13.98687 -13.52216 -13.34558 -13.27125 -13.07123 -12.91979 -12.76706 -12.63940 -12.62969 -12.53191 -12.41663 -11.99149 -11.95776 -11.07679 -10.93956 -10.22102 -9.94631 -9.39152 -9.22452 -8.33701 -6.89007 1.26944 1.43998 1.44333 1.60148 1.64454 2.17227 2.41091 2.48166 3.06947 3.18040 3.52486 3.78941 3.92153 4.06244 4.14709 4.25319 4.32648 4.40049 4.49991 4.53619 4.56952 4.62911 4.70484 4.74256 4.78368 4.88952 5.00156 5.05088 5.09350 5.17368 5.24206 5.32095 5.77059 5.96639 6.00305 6.06329 6.29810 6.84059 6.87049 7.32058 8.35338 8.61697 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.005396 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.343197 B = 5187.437138 C = 6346.583846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.103 3.897 3 H 0.082 0.918 4 C 0.530 3.470 5 O -0.547 6.547 6 N -0.614 5.614 7 C 0.138 3.862 8 C 0.046 3.954 9 N -0.556 5.556 10 C 0.025 3.975 11 C 0.016 3.984 12 C 0.345 3.655 13 N -0.650 5.650 14 C 0.569 3.431 15 O -0.611 6.611 16 C -0.557 4.557 17 H 0.097 0.903 18 C 0.033 3.967 19 N -0.817 5.817 20 Si 0.997 3.003 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.243 1.243 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -13.592 10.375 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.005 4.005 3 H 0.100 0.900 4 C 0.317 3.683 5 O -0.425 6.425 6 N -0.348 5.348 7 C 0.017 3.983 8 C -0.084 4.084 9 N -0.281 5.281 10 C -0.123 4.123 11 C -0.131 4.131 12 C 0.136 3.864 13 N -0.392 5.392 14 C 0.377 3.623 15 O -0.496 6.496 16 C -0.593 4.593 17 H 0.115 0.885 18 C -0.183 4.183 19 N -0.446 5.446 20 Si 0.816 3.184 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.166 1.166 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.888 -12.583 11.044 17.747 hybrid contribution -0.486 -0.387 -1.313 1.453 sum 5.402 -12.970 9.730 17.090 Atomic orbital electron populations 1.21742 0.92625 1.02145 1.02585 1.21163 0.96862 0.97084 0.85431 0.90037 1.20466 0.77622 0.81111 0.89109 1.90683 1.60768 1.70746 1.20286 1.48444 1.50981 1.27863 1.07546 1.21471 0.95130 0.88257 0.93458 1.22362 0.97062 0.93591 0.95359 1.61917 1.10787 1.17927 1.37442 1.22419 0.95837 0.94524 0.99536 1.22570 0.93314 0.99410 0.97854 1.21271 0.97128 0.91296 0.76704 1.48622 1.55603 1.30514 1.04459 1.18321 0.80529 0.84735 0.78741 1.90594 1.45677 1.32439 1.80878 1.21349 1.30075 1.17680 0.90183 0.88544 1.26946 0.93043 0.96237 1.02090 1.70163 1.29147 1.25393 1.19904 0.85005 0.79763 0.77633 0.75981 1.18970 1.20115 1.16595 0.90233 0.92729 0.92658 0.89507 0.87136 0.92214 0.94071 0.95399 0.89634 0.91779 0.90333 0.89964 0.95195 0.89678 0.90264 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.28 71.98 0.67 -4.55 16 2 C 0.10 4.17 3.62 44.18 0.16 4.33 16 3 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 4 C 0.53 19.27 7.42 87.75 0.65 19.92 16 5 O -0.55 -21.86 17.67 -3.02 -0.05 -21.92 16 6 N -0.61 -18.45 2.93 -834.40 -2.44 -20.89 16 7 C 0.14 3.15 5.91 86.38 0.51 3.66 16 8 C 0.05 1.00 5.28 86.30 0.46 1.46 16 9 N -0.56 -10.44 5.02 -948.87 -4.76 -15.21 16 10 C 0.02 0.40 9.57 127.69 1.22 1.62 16 11 C 0.02 0.23 9.32 127.69 1.19 1.42 16 12 C 0.34 11.31 6.82 170.95 1.17 12.47 16 13 N -0.65 -28.45 3.10 -817.13 -2.53 -30.99 16 14 C 0.57 31.03 7.62 86.36 0.66 31.69 16 15 O -0.61 -38.84 14.22 -4.29 -0.06 -38.90 16 16 C -0.56 -28.87 9.09 24.83 0.23 -28.64 16 17 H 0.10 4.34 7.27 -2.91 -0.02 4.32 16 18 C 0.03 1.71 5.49 85.31 0.47 2.18 16 19 N -0.82 -47.26 11.85 21.84 0.26 -47.00 16 20 Si 1.00 37.72 29.56 68.60 2.03 39.75 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16 24 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 25 H 0.05 2.49 6.96 -2.39 -0.02 2.47 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 2.15 7.98 -2.39 -0.02 2.13 16 28 H 0.11 1.91 6.55 -2.39 -0.02 1.90 16 29 H 0.06 1.55 8.06 -2.38 -0.02 1.53 16 30 H 0.04 0.90 8.12 -2.39 -0.02 0.89 16 31 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.08 1.00 6.47 -2.39 -0.02 0.98 16 35 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.28 14.51 8.29 -92.71 -0.77 13.74 16 Total: -1.00 -71.58 326.15 0.84 -70.74 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.03 Total: 18.87 kcal Atomic # 6 Polarization: 38.17 SS G_CDS: 7.38 Total: 45.55 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -9.48 Total: -114.09 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -0.11 Total: -60.82 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -71.58 0.84 -70.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592875439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.605 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds