Wall clock time and date at job start Mon Mar 30 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00085 * 2 1 4 4 O 1.20828 * 120.00209 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00135 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.99699 * 59.63860 * 5 3 2 7 7 C 1.54325 * 109.87930 * 298.54526 * 5 3 2 8 8 C 1.55157 * 102.94374 * 218.38825 * 7 5 3 9 9 C 1.54918 * 101.58155 * 35.49936 * 8 7 5 10 10 N 1.47015 * 109.88612 * 180.73727 * 5 3 2 11 11 C 1.34782 * 125.64929 * 298.37752 * 10 5 3 12 12 O 1.21279 * 119.99514 * 359.97438 * 11 10 5 13 13 C 1.50695 * 120.00344 * 179.97438 * 11 10 5 14 14 C 1.53001 * 109.47429 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47315 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47141 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00251 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46940 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47004 * 120.00151 * 20 18 16 23 23 H 1.48500 * 109.47143 * 240.00094 * 20 18 16 24 24 H 1.09004 * 109.46678 * 300.00252 * 1 2 3 25 25 H 1.09001 * 109.47144 * 59.99477 * 1 2 3 26 26 H 1.08995 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08996 * 110.72124 * 100.02925 * 7 5 3 28 28 H 1.08999 * 110.87305 * 336.82352 * 7 5 3 29 29 H 1.09001 * 111.00846 * 153.57645 * 8 7 5 30 30 H 1.09000 * 111.00346 * 277.43176 * 8 7 5 31 31 H 1.08999 * 110.35942 * 81.82689 * 9 8 7 32 32 H 1.08996 * 110.36556 * 204.15522 * 9 8 7 33 33 H 1.09003 * 109.46984 * 300.00232 * 13 11 10 34 34 H 1.08999 * 109.47024 * 59.99815 * 13 11 10 35 35 H 1.08993 * 109.47141 * 300.00200 * 14 13 11 36 36 H 1.09002 * 109.46766 * 60.00277 * 14 13 11 37 37 H 1.09003 * 109.47207 * 300.00344 * 15 14 13 38 38 H 1.08999 * 109.46915 * 59.99997 * 15 14 13 39 39 H 0.97002 * 120.00375 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9653 0.7775 -0.8846 7 6 4.1272 0.6095 1.2739 8 6 5.3133 1.5341 1.6554 9 6 4.7666 2.9253 1.2486 10 7 3.9933 2.6815 0.0173 11 6 3.7224 3.5969 -0.9341 12 8 3.0740 3.2834 -1.9099 13 6 4.2251 5.0097 -0.7855 14 6 3.7831 5.8381 -1.9935 15 6 4.2929 7.2727 -1.8423 16 6 3.8581 8.0885 -3.0325 17 1 3.2759 7.6297 -3.8180 18 6 4.2034 9.4205 -3.1185 19 7 4.9127 9.9790 -2.1623 20 14 3.6638 10.4318 -4.5935 21 1 2.8818 9.5757 -5.5213 22 1 2.8194 11.5641 -4.1351 23 1 4.8606 10.9597 -5.2963 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 4.4785 -0.3997 1.0594 28 1 3.3788 0.5956 2.0663 29 1 5.5139 1.4909 2.7260 30 1 6.2053 1.2820 1.0819 31 1 4.1193 3.3219 2.0308 32 1 5.5888 3.6128 1.0504 33 1 3.8155 5.4472 0.1250 34 1 5.3135 5.0039 -0.7280 35 1 4.1929 5.4005 -2.9037 36 1 2.6946 5.8440 -2.0514 37 1 3.8826 7.7101 -0.9320 38 1 5.3813 7.2673 -1.7841 39 1 5.1560 10.9160 -2.2231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593955602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:29 Heat of formation + Delta-G solvation = -131.026270 kcal Electronic energy + Delta-G solvation = -20776.669620 eV Core-core repulsion = 17491.139642 eV Total energy + Delta-G solvation = -3285.529978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01235 -39.44231 -37.44143 -36.39446 -34.15245 -32.25145 -31.57714 -30.39086 -27.88796 -27.50026 -24.61492 -23.45380 -22.08574 -21.29891 -20.03921 -18.98867 -18.00866 -17.09084 -16.79105 -16.26641 -16.21617 -15.71198 -15.10948 -14.47309 -14.32284 -13.93105 -13.67260 -13.50763 -13.24210 -12.84411 -12.64168 -12.24297 -12.13192 -11.97154 -11.81257 -11.54600 -11.32632 -11.25203 -10.90806 -10.78677 -10.53451 -10.48678 -10.47947 -9.66155 -9.62204 -9.23931 -8.97306 -8.78361 -8.28681 -5.94218 -3.95186 2.14860 2.31295 2.97929 3.10906 3.36349 3.43382 3.49763 4.08840 4.17703 4.50362 4.52670 4.74408 4.84962 4.94341 5.02624 5.04687 5.13060 5.35195 5.35744 5.41888 5.42403 5.47752 5.52351 5.73802 5.78013 5.81590 6.08421 6.25817 6.31355 6.78381 6.98559 7.20972 7.48949 7.69745 7.75617 7.88381 8.06890 8.42818 8.51356 9.12040 9.68594 11.17399 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.003745 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.832977 B = 7474.713191 C = 8220.572291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.447 3.553 4 O -0.480 6.480 5 C 0.148 3.852 6 H 0.112 0.888 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.098 3.902 10 N -0.615 5.615 11 C 0.536 3.464 12 O -0.524 6.524 13 C -0.129 4.129 14 C -0.095 4.095 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 -22.765 11.480 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.287 3.713 4 O -0.364 6.364 5 C 0.041 3.959 6 H 0.130 0.870 7 C -0.155 4.155 8 C -0.170 4.170 9 C -0.025 4.025 10 N -0.353 5.353 11 C 0.327 3.673 12 O -0.398 6.398 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.016 4.016 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.920 -22.365 10.900 24.897 hybrid contribution -0.588 0.707 -0.698 1.155 sum -1.508 -21.658 10.202 23.988 Atomic orbital electron populations 1.23238 0.76414 1.03419 1.02680 1.86467 1.23380 1.33468 1.84618 1.24147 0.92350 0.81676 0.73155 1.90723 1.66501 1.36235 1.42987 1.21042 0.86940 0.85780 1.02103 0.87040 1.22592 0.98291 0.99780 0.94864 1.22840 0.97817 0.93767 1.02593 1.22400 0.95607 0.97996 0.86465 1.48602 1.55143 1.08647 1.22903 1.21052 0.78532 0.86998 0.80676 1.90678 1.38483 1.80374 1.30218 1.21816 1.01994 0.89820 1.03254 1.21469 1.00840 0.96830 0.94218 1.19131 0.96271 0.89033 0.97187 1.21316 1.33379 0.94801 1.05921 0.92534 1.25015 0.95280 0.97950 0.96293 1.69971 1.38586 1.12365 1.32869 0.86541 0.78379 0.80175 0.82976 1.19691 1.21052 1.21044 0.92068 0.91815 0.88161 0.88553 0.90081 0.89155 0.89819 0.91077 0.89263 0.89312 0.89343 0.92701 0.92648 0.96580 0.96578 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.25 10.53 -39.26 -0.41 -4.66 16 3 C 0.45 6.36 6.79 36.00 0.24 6.60 16 4 O -0.48 -8.83 14.78 -24.06 -0.36 -9.19 16 5 C 0.15 1.71 3.37 -68.11 -0.23 1.48 16 6 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.12 -0.81 6.43 -24.90 -0.16 -0.97 16 8 C -0.13 -0.79 7.09 -24.58 -0.17 -0.97 16 9 C 0.10 0.91 6.69 -2.52 -0.02 0.89 16 10 N -0.62 -8.38 2.84 -164.33 -0.47 -8.85 16 11 C 0.54 9.70 7.01 -10.99 -0.08 9.62 16 12 O -0.52 -11.55 15.24 -8.91 -0.14 -11.69 16 13 C -0.13 -2.32 4.71 -27.89 -0.13 -2.45 16 14 C -0.10 -2.19 4.44 -26.73 -0.12 -2.30 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -15.32 9.11 -34.44 -0.31 -15.64 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 20 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.39 7.85 -51.93 -0.41 0.99 16 35 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.05 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -37.36 329.13 -7.08 -44.44 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -6.24 Total: -5.28 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.15 Total: -0.38 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.27 Total: -35.62 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.90 Total: -25.54 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.36 -7.08 -44.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593955602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.584 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds