Wall clock time and date at job start Mon Mar 30 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00085 * 2 1 4 4 O 1.20828 * 120.00209 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00135 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.99699 * 59.63860 * 5 3 2 7 7 C 1.54325 * 109.87930 * 298.54526 * 5 3 2 8 8 C 1.55157 * 102.94374 * 218.38825 * 7 5 3 9 9 C 1.54918 * 101.58155 * 35.49936 * 8 7 5 10 10 N 1.47015 * 109.88612 * 180.73727 * 5 3 2 11 11 C 1.34782 * 125.64929 * 298.37752 * 10 5 3 12 12 O 1.21279 * 119.99514 * 359.97438 * 11 10 5 13 13 C 1.50695 * 120.00344 * 179.97438 * 11 10 5 14 14 C 1.53001 * 109.47429 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47315 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47141 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00251 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46940 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47004 * 120.00151 * 20 18 16 23 23 H 1.48500 * 109.47143 * 240.00094 * 20 18 16 24 24 H 1.09004 * 109.46678 * 300.00252 * 1 2 3 25 25 H 1.09001 * 109.47144 * 59.99477 * 1 2 3 26 26 H 1.08995 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08996 * 110.72124 * 100.02925 * 7 5 3 28 28 H 1.08999 * 110.87305 * 336.82352 * 7 5 3 29 29 H 1.09001 * 111.00846 * 153.57645 * 8 7 5 30 30 H 1.09000 * 111.00346 * 277.43176 * 8 7 5 31 31 H 1.08999 * 110.35942 * 81.82689 * 9 8 7 32 32 H 1.08996 * 110.36556 * 204.15522 * 9 8 7 33 33 H 1.09003 * 109.46984 * 300.00232 * 13 11 10 34 34 H 1.08999 * 109.47024 * 59.99815 * 13 11 10 35 35 H 1.08993 * 109.47141 * 300.00200 * 14 13 11 36 36 H 1.09002 * 109.46766 * 60.00277 * 14 13 11 37 37 H 1.09003 * 109.47207 * 300.00344 * 15 14 13 38 38 H 1.08999 * 109.46915 * 59.99997 * 15 14 13 39 39 H 0.97002 * 120.00375 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9653 0.7775 -0.8846 7 6 4.1272 0.6095 1.2739 8 6 5.3133 1.5341 1.6554 9 6 4.7666 2.9253 1.2486 10 7 3.9933 2.6815 0.0173 11 6 3.7224 3.5969 -0.9341 12 8 3.0740 3.2834 -1.9099 13 6 4.2251 5.0097 -0.7855 14 6 3.7831 5.8381 -1.9935 15 6 4.2929 7.2727 -1.8423 16 6 3.8581 8.0885 -3.0325 17 1 3.2759 7.6297 -3.8180 18 6 4.2034 9.4205 -3.1185 19 7 4.9127 9.9790 -2.1623 20 14 3.6638 10.4318 -4.5935 21 1 2.8818 9.5757 -5.5213 22 1 2.8194 11.5641 -4.1351 23 1 4.8606 10.9597 -5.2963 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 4.4785 -0.3997 1.0594 28 1 3.3788 0.5956 2.0663 29 1 5.5139 1.4909 2.7260 30 1 6.2053 1.2820 1.0819 31 1 4.1193 3.3219 2.0308 32 1 5.5888 3.6128 1.0504 33 1 3.8155 5.4472 0.1250 34 1 5.3135 5.0039 -0.7280 35 1 4.1929 5.4005 -2.9037 36 1 2.6946 5.8440 -2.0514 37 1 3.8826 7.7101 -0.9320 38 1 5.3813 7.2673 -1.7841 39 1 5.1560 10.9160 -2.2231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593955602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:28 Heat of formation + Delta-G solvation = -155.336688 kcal Electronic energy + Delta-G solvation = -20777.723799 eV Core-core repulsion = 17491.139642 eV Total energy + Delta-G solvation = -3286.584157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07092 -40.62222 -38.54320 -37.47935 -36.15809 -34.12090 -32.77821 -31.24818 -29.63543 -28.39072 -26.17162 -24.82334 -23.05253 -22.44616 -21.59633 -20.19111 -19.01267 -18.58436 -18.18178 -17.78314 -17.23867 -16.90207 -16.50834 -16.44581 -15.52749 -14.97641 -14.79405 -14.48135 -14.38378 -14.18324 -13.90225 -13.76074 -13.46705 -13.20036 -13.01508 -12.76562 -12.65439 -12.55856 -12.44297 -12.10327 -11.88506 -11.86011 -11.61034 -11.50457 -11.46068 -11.27919 -10.85138 -10.56342 -9.87978 -8.21932 -6.32016 1.07520 1.28309 1.37911 1.38310 1.52409 1.74328 2.02200 2.40494 3.10730 3.35276 3.47376 3.78574 3.81413 4.04106 4.14012 4.16553 4.22690 4.23482 4.25355 4.48910 4.62203 4.66631 4.77007 4.80588 4.89682 4.92667 5.04310 5.10036 5.14345 5.21060 5.29028 5.33098 5.50811 5.71616 5.83421 6.24397 6.33824 6.63785 6.82455 7.10099 7.36514 8.89906 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.003745 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.832977 B = 7474.713191 C = 8220.572291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.445 3.555 4 O -0.532 6.532 5 C 0.137 3.863 6 H 0.118 0.882 7 C -0.106 4.106 8 C -0.117 4.117 9 C 0.083 3.917 10 N -0.612 5.612 11 C 0.533 3.467 12 O -0.577 6.577 13 C -0.120 4.120 14 C -0.082 4.082 15 C 0.029 3.971 16 C -0.549 4.549 17 H 0.048 0.952 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.963 3.037 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.272 1.272 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.031 0.969 37 H -0.001 1.001 38 H 0.006 0.994 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -24.262 12.560 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.287 3.713 4 O -0.421 6.421 5 C 0.031 3.969 6 H 0.135 0.865 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.038 4.038 10 N -0.347 5.347 11 C 0.324 3.676 12 O -0.455 6.455 13 C -0.160 4.160 14 C -0.120 4.120 15 C -0.008 4.008 16 C -0.587 4.587 17 H 0.067 0.933 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.787 3.213 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.197 1.197 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.159 0.841 27 H 0.145 0.855 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.018 0.982 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.136 -23.914 12.040 26.774 hybrid contribution -0.934 1.111 -0.975 1.748 sum -0.798 -22.803 11.066 25.359 Atomic orbital electron populations 1.23514 0.75130 1.05815 1.01886 1.86467 1.24649 1.32111 1.83890 1.24755 0.93449 0.81499 0.71581 1.90705 1.67771 1.37923 1.45656 1.21494 0.85462 0.84878 1.05049 0.86485 1.22688 0.98468 1.00944 0.92244 1.22869 0.97437 0.90628 1.04542 1.22812 0.95575 1.00830 0.84622 1.48553 1.54242 1.09012 1.22902 1.20869 0.78166 0.87563 0.81010 1.90648 1.40974 1.81292 1.32623 1.21627 1.03592 0.89705 1.01028 1.21168 0.99039 0.95505 0.96265 1.18997 0.95398 0.90902 0.95550 1.21691 1.34127 0.95997 1.06877 0.93333 1.25897 0.95030 0.99020 0.99424 1.70065 1.39068 1.13054 1.34590 0.85435 0.78371 0.78358 0.79108 1.19461 1.20006 1.19710 0.92013 0.93563 0.84107 0.85523 0.89709 0.86211 0.88567 0.90808 0.88309 0.88229 0.86701 0.93829 0.95004 0.98241 0.97537 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -7.98 10.53 -51.41 -0.54 -8.52 16 3 C 0.44 12.60 6.79 71.23 0.48 13.08 16 4 O -0.53 -20.26 14.78 27.03 0.40 -19.86 16 5 C 0.14 2.98 3.37 44.59 0.15 3.13 16 6 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 7 C -0.11 -1.09 6.43 31.78 0.20 -0.89 16 8 C -0.12 -0.92 7.09 31.99 0.23 -0.70 16 9 C 0.08 1.34 6.69 86.86 0.58 1.92 16 10 N -0.61 -16.16 2.84 -792.20 -2.25 -18.41 16 11 C 0.53 19.61 7.01 87.65 0.61 20.22 16 12 O -0.58 -26.56 15.24 10.81 0.16 -26.40 16 13 C -0.12 -4.36 4.71 29.85 0.14 -4.22 16 14 C -0.08 -3.89 4.44 30.59 0.14 -3.75 16 15 C 0.03 1.58 4.97 29.85 0.15 1.73 16 16 C -0.55 -33.46 9.11 25.60 0.23 -33.23 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -57.16 13.29 21.44 0.28 -56.88 16 20 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 25 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 26 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.86 7.85 -2.39 -0.02 0.84 16 29 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.42 7.48 -2.39 -0.02 1.40 16 33 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.11 3.52 7.85 -2.39 -0.02 3.50 16 35 H 0.04 2.13 8.10 -2.39 -0.02 2.11 16 36 H 0.03 1.62 8.10 -2.39 -0.02 1.61 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -84.60 329.13 5.68 -78.92 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.02 Total: 3.09 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 4.58 Total: -0.24 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.97 Total: -75.29 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: 0.02 Total: -54.78 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -84.60 5.68 -78.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593955602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.419 kcal (2) G-P(sol) polarization free energy of solvation -84.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds