Wall clock time and date at job start Mon Mar 30 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 N 1.46500 * 109.47209 * 179.97438 * 5 3 2 8 8 C 1.34777 * 120.00075 * 204.99847 * 7 5 3 9 9 O 1.21287 * 119.99865 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00179 * 179.97438 * 8 7 5 11 11 C 1.52999 * 109.47204 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47249 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.47149 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00047 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99742 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00148 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47250 * 89.99679 * 17 15 13 19 19 H 1.48499 * 109.46900 * 209.99888 * 17 15 13 20 20 H 1.48499 * 109.46996 * 329.99714 * 17 15 13 21 21 C 1.52997 * 109.47212 * 299.99952 * 5 3 2 22 22 C 1.53001 * 117.50135 * 128.74405 * 21 5 3 23 23 C 1.53000 * 117.49905 * 60.08415 * 21 5 3 24 24 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 26 26 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 27 27 H 0.96997 * 120.00274 * 24.99818 * 7 5 3 28 28 H 1.08999 * 109.47169 * 300.00043 * 10 8 7 29 29 H 1.08999 * 109.47104 * 60.00393 * 10 8 7 30 30 H 1.09008 * 109.46871 * 299.99745 * 11 10 8 31 31 H 1.08995 * 109.47484 * 59.99653 * 11 10 8 32 32 H 1.08996 * 109.46462 * 299.99692 * 12 11 10 33 33 H 1.08999 * 109.46786 * 59.99735 * 12 11 10 34 34 H 0.96998 * 119.99627 * 180.02562 * 16 15 13 35 35 H 1.09006 * 115.55153 * 274.41784 * 21 5 3 36 36 H 1.09002 * 117.49734 * 0.02562 * 22 21 5 37 37 H 1.08994 * 117.49847 * 145.02044 * 22 21 5 38 38 H 1.09001 * 117.49936 * 214.98052 * 23 21 5 39 39 H 1.08999 * 117.50086 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 7 3.9817 2.6798 -0.0002 8 6 5.1874 3.0258 -0.4931 9 8 5.9284 2.1741 -0.9366 10 6 5.6144 4.4710 -0.4944 11 6 7.0128 4.5891 -1.1040 12 6 7.4466 6.0563 -1.1047 13 6 8.8242 6.1725 -1.7045 14 1 9.3390 5.2883 -2.0502 15 6 9.4273 7.4077 -1.8120 16 7 8.8002 8.4845 -1.3914 17 14 11.1347 7.5518 -2.5561 18 1 11.0199 7.7565 -4.0224 19 1 11.8433 8.7070 -1.9490 20 1 11.8980 6.3065 -2.2884 21 6 4.1129 0.5816 1.2502 22 6 5.2059 -0.4708 1.0532 23 6 3.7875 -0.9020 1.4344 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.3890 3.3610 0.3541 28 1 4.9104 5.0574 -1.0849 29 1 5.6310 4.8459 0.5289 30 1 7.7171 4.0026 -0.5138 31 1 6.9959 4.2143 -2.1273 32 1 6.7424 6.6430 -1.6946 33 1 7.4636 6.4306 -0.0811 34 1 9.2244 9.3535 -1.4674 35 1 4.1656 1.2003 2.1461 36 1 5.5359 -0.6689 0.0334 37 1 5.9773 -0.5447 1.8197 38 1 3.6264 -1.2594 2.4515 39 1 3.1836 -1.3840 0.6656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:57 Heat of formation + Delta-G solvation = -112.537520 kcal Electronic energy + Delta-G solvation = -20267.554385 eV Core-core repulsion = 16982.826139 eV Total energy + Delta-G solvation = -3284.728246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12277 -39.47576 -37.48340 -36.91343 -34.26489 -34.03686 -32.02100 -29.59725 -28.04111 -26.78313 -23.74469 -22.65438 -22.23632 -21.07856 -20.39081 -19.86245 -18.01067 -17.54775 -16.81859 -16.36267 -16.27653 -15.86757 -15.41466 -14.68352 -14.54975 -14.40761 -13.82045 -13.47743 -13.23427 -13.09013 -12.44462 -12.25072 -11.98226 -11.79738 -11.69320 -11.33004 -11.19311 -11.17869 -10.79028 -10.68287 -10.58768 -10.52032 -10.20857 -9.74533 -9.66239 -9.27105 -9.21807 -9.00892 -8.30098 -5.95737 -3.97146 1.78042 2.11879 2.85152 3.14022 3.36221 3.41975 3.46688 3.72216 4.25808 4.46657 4.51076 4.72258 4.73650 4.75728 4.82776 4.93604 5.11606 5.16782 5.33649 5.40351 5.52267 5.72238 5.73292 5.75179 5.88044 5.97945 5.99825 6.23021 6.31307 6.74393 6.94451 7.17890 7.31446 7.51188 7.73220 7.86098 8.05097 8.36632 8.48877 9.10068 9.66737 11.15816 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.003161 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.888361 B = 8855.634844 C = 9376.581470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.465 3.535 4 O -0.501 6.501 5 C 0.188 3.812 6 H 0.125 0.875 7 N -0.726 5.726 8 C 0.520 3.480 9 O -0.530 6.530 10 C -0.136 4.136 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.173 4.173 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.409 0.591 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.979 -18.545 6.290 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.307 3.693 4 O -0.388 6.388 5 C 0.081 3.919 6 H 0.142 0.858 7 N -0.382 5.382 8 C 0.309 3.691 9 O -0.404 6.404 10 C -0.176 4.176 11 C -0.132 4.132 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.193 4.193 22 C -0.192 4.192 23 C -0.206 4.206 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.246 0.754 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.645 -18.669 5.968 25.714 hybrid contribution 0.290 0.683 -0.161 0.759 sum -16.355 -17.986 5.807 24.994 Atomic orbital electron populations 1.23319 0.76074 1.03870 1.02721 1.86523 1.23514 1.32612 1.83810 1.23732 0.91701 0.81755 0.72120 1.90680 1.66773 1.36313 1.45064 1.19828 0.85928 0.85681 1.00503 0.85777 1.45993 1.19835 1.06711 1.65674 1.21331 0.79693 0.92578 0.75504 1.90678 1.52216 1.52281 1.45256 1.21854 1.01529 0.90352 1.03884 1.21456 0.91245 1.00733 0.99802 1.19134 0.96146 0.89267 0.97174 1.21271 1.01467 0.92968 1.39882 0.92565 1.25023 0.97871 0.95954 0.95695 1.69966 1.37946 0.98313 1.47521 0.86592 0.84510 0.77608 0.79306 1.20689 1.21279 1.19835 1.22513 1.06232 0.92283 0.98267 1.23036 0.91770 1.00759 1.03624 1.23094 0.99219 0.95062 1.03274 0.87865 0.91737 0.91777 0.75407 0.89112 0.89122 0.92607 0.92655 0.96580 0.96570 0.93075 0.86925 0.87940 0.88471 0.88592 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.12 8.50 -39.24 -0.33 -3.46 16 3 C 0.47 5.11 7.30 36.01 0.26 5.38 16 4 O -0.50 -6.57 15.59 -18.75 -0.29 -6.86 16 5 C 0.19 2.14 2.72 -69.08 -0.19 1.95 16 6 H 0.12 1.49 7.33 -51.93 -0.38 1.11 16 7 N -0.73 -9.20 4.95 -54.93 -0.27 -9.47 16 8 C 0.52 8.25 7.79 -10.99 -0.09 8.17 16 9 O -0.53 -9.98 15.64 5.55 0.09 -9.90 16 10 C -0.14 -2.27 5.70 -27.88 -0.16 -2.42 16 11 C -0.09 -2.03 4.44 -26.73 -0.12 -2.15 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 17 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.17 -1.76 5.41 -90.62 -0.49 -2.25 16 22 C -0.15 -1.53 10.18 -26.69 -0.27 -1.80 16 23 C -0.17 -1.38 9.45 -26.69 -0.25 -1.63 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.41 4.67 7.79 -40.82 -0.32 4.35 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 31 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.83 6.85 -51.93 -0.36 0.47 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -33.60 335.61 -6.91 -40.50 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.08 Total: 0.51 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.79 Total: -6.93 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.46 Total: -36.01 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.54 Total: -20.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.60 -6.91 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.037 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds