Wall clock time and date at job start Mon Mar 30 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00059 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47060 * 60.00008 * 5 3 2 7 7 N 1.46500 * 109.47209 * 179.97438 * 5 3 2 8 8 C 1.34777 * 120.00075 * 204.99847 * 7 5 3 9 9 O 1.21287 * 119.99865 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00179 * 179.97438 * 8 7 5 11 11 C 1.52999 * 109.47204 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47249 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.47149 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00047 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99742 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00148 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47250 * 89.99679 * 17 15 13 19 19 H 1.48499 * 109.46900 * 209.99888 * 17 15 13 20 20 H 1.48499 * 109.46996 * 329.99714 * 17 15 13 21 21 C 1.52997 * 109.47212 * 299.99952 * 5 3 2 22 22 C 1.53001 * 117.50135 * 128.74405 * 21 5 3 23 23 C 1.53000 * 117.49905 * 60.08415 * 21 5 3 24 24 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47195 * 300.00371 * 1 2 3 26 26 H 1.08991 * 109.46936 * 60.00159 * 1 2 3 27 27 H 0.96997 * 120.00274 * 24.99818 * 7 5 3 28 28 H 1.08999 * 109.47169 * 300.00043 * 10 8 7 29 29 H 1.08999 * 109.47104 * 60.00393 * 10 8 7 30 30 H 1.09008 * 109.46871 * 299.99745 * 11 10 8 31 31 H 1.08995 * 109.47484 * 59.99653 * 11 10 8 32 32 H 1.08996 * 109.46462 * 299.99692 * 12 11 10 33 33 H 1.08999 * 109.46786 * 59.99735 * 12 11 10 34 34 H 0.96998 * 119.99627 * 180.02562 * 16 15 13 35 35 H 1.09006 * 115.55153 * 274.41784 * 21 5 3 36 36 H 1.09002 * 117.49734 * 0.02562 * 22 21 5 37 37 H 1.08994 * 117.49847 * 145.02044 * 22 21 5 38 38 H 1.09001 * 117.49936 * 214.98052 * 23 21 5 39 39 H 1.08999 * 117.50086 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 7 3.9817 2.6798 -0.0002 8 6 5.1874 3.0258 -0.4931 9 8 5.9284 2.1741 -0.9366 10 6 5.6144 4.4710 -0.4944 11 6 7.0128 4.5891 -1.1040 12 6 7.4466 6.0563 -1.1047 13 6 8.8242 6.1725 -1.7045 14 1 9.3390 5.2883 -2.0502 15 6 9.4273 7.4077 -1.8120 16 7 8.8002 8.4845 -1.3914 17 14 11.1347 7.5518 -2.5561 18 1 11.0199 7.7565 -4.0224 19 1 11.8433 8.7070 -1.9490 20 1 11.8980 6.3065 -2.2884 21 6 4.1129 0.5816 1.2502 22 6 5.2059 -0.4708 1.0532 23 6 3.7875 -0.9020 1.4344 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.3890 3.3610 0.3541 28 1 4.9104 5.0574 -1.0849 29 1 5.6310 4.8459 0.5289 30 1 7.7171 4.0026 -0.5138 31 1 6.9959 4.2143 -2.1273 32 1 6.7424 6.6430 -1.6946 33 1 7.4636 6.4306 -0.0811 34 1 9.2244 9.3535 -1.4674 35 1 4.1656 1.2003 2.1461 36 1 5.5359 -0.6689 0.0334 37 1 5.9773 -0.5447 1.8197 38 1 3.6264 -1.2594 2.4515 39 1 3.1836 -1.3840 0.6656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:56 Heat of formation + Delta-G solvation = -133.678363 kcal Electronic energy + Delta-G solvation = -20268.471121 eV Core-core repulsion = 16982.826139 eV Total energy + Delta-G solvation = -3285.644982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01028 -40.64599 -38.35515 -37.73345 -36.12385 -35.19514 -34.00638 -30.74032 -29.38019 -27.81812 -25.61413 -23.38876 -23.01863 -22.53746 -21.43673 -21.31500 -19.08738 -18.58323 -18.18696 -17.62757 -17.39443 -16.94085 -16.71723 -16.44288 -15.60931 -15.53226 -14.87547 -14.72863 -14.39752 -14.23006 -13.92498 -13.75518 -13.18196 -13.04742 -12.79893 -12.60222 -12.50481 -12.39915 -12.38300 -12.03855 -11.85873 -11.54324 -11.46706 -11.44154 -11.25861 -11.02023 -10.80532 -10.53572 -10.31454 -8.19328 -6.29301 0.92128 1.27708 1.40431 1.41578 1.53128 1.60413 2.14539 2.42618 2.94017 3.13816 3.46672 3.66133 3.81028 3.90476 4.04431 4.19241 4.23065 4.27669 4.30146 4.34195 4.45986 4.72353 4.79652 4.85706 4.97930 4.99887 5.08972 5.12272 5.20040 5.22106 5.26619 5.30772 5.55685 5.76954 5.88259 6.27721 6.38162 6.51058 6.86657 7.14890 7.39420 8.92358 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.003161 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.888361 B = 8855.634844 C = 9376.581470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.473 3.527 4 O -0.525 6.525 5 C 0.186 3.814 6 H 0.117 0.883 7 N -0.712 5.712 8 C 0.527 3.473 9 O -0.563 6.563 10 C -0.130 4.130 11 C -0.080 4.080 12 C 0.025 3.975 13 C -0.546 4.546 14 H 0.053 0.947 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.185 4.185 22 C -0.167 4.167 23 C -0.143 4.143 24 H 0.136 0.864 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.417 0.583 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.043 0.957 32 H -0.001 1.001 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -19.750 6.699 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.316 3.684 4 O -0.415 6.415 5 C 0.079 3.921 6 H 0.135 0.865 7 N -0.368 5.368 8 C 0.316 3.684 9 O -0.441 6.441 10 C -0.170 4.170 11 C -0.119 4.119 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.787 3.213 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.205 4.205 22 C -0.204 4.204 23 C -0.180 4.180 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.255 0.745 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.345 -19.897 6.393 27.159 hybrid contribution 0.408 1.018 -0.275 1.131 sum -16.937 -18.879 6.118 26.090 Atomic orbital electron populations 1.23638 0.74249 1.06069 1.02666 1.86508 1.25176 1.31205 1.83156 1.23533 0.91320 0.82039 0.71540 1.90674 1.67185 1.37171 1.46423 1.19893 0.86628 0.84563 1.01026 0.86514 1.45761 1.18760 1.07893 1.64346 1.20997 0.80316 0.91732 0.75392 1.90672 1.53455 1.52913 1.47074 1.21684 0.98826 0.91633 1.04820 1.21158 0.94051 0.97237 0.99422 1.19026 0.94862 0.91836 0.95515 1.21701 1.02991 0.93237 1.40483 0.92857 1.25925 1.02210 0.95510 0.95970 1.70075 1.39812 0.98889 1.48336 0.85490 0.79254 0.77927 0.78655 1.19767 1.20395 1.19108 1.22497 1.07025 0.93341 0.97589 1.23038 0.92811 1.01450 1.03120 1.23164 0.97418 0.93014 1.04431 0.84575 0.91587 0.92100 0.74455 0.87623 0.87263 0.93636 0.93836 0.98249 0.98090 0.92698 0.86769 0.89233 0.88182 0.86738 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.47 8.50 -51.36 -0.44 -5.91 16 3 C 0.47 9.76 7.30 71.24 0.52 10.28 16 4 O -0.53 -13.16 15.59 21.96 0.34 -12.82 16 5 C 0.19 4.06 2.72 44.24 0.12 4.18 16 6 H 0.12 2.77 7.33 -2.39 -0.02 2.76 16 7 N -0.71 -17.46 4.95 -446.09 -2.21 -19.67 16 8 C 0.53 16.51 7.79 87.66 0.68 17.19 16 9 O -0.56 -21.37 15.64 -3.05 -0.05 -21.42 16 10 C -0.13 -4.26 5.70 29.85 0.17 -4.09 16 11 C -0.08 -3.52 4.44 30.59 0.14 -3.38 16 12 C 0.02 1.32 4.97 29.85 0.15 1.46 16 13 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 17 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C -0.19 -3.51 5.41 -10.79 -0.06 -3.57 16 22 C -0.17 -3.16 10.18 30.62 0.31 -2.85 16 23 C -0.14 -2.02 9.45 30.62 0.29 -1.73 16 24 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 27 H 0.42 9.02 7.79 -92.71 -0.72 8.30 16 28 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.04 2.05 8.10 -2.38 -0.02 2.03 16 31 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.47 6.85 -2.39 -0.02 1.45 16 Total: -1.00 -72.21 335.61 4.49 -67.72 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.32 Total: 13.87 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.21 Total: -12.45 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.92 Total: -76.38 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.14 Total: -40.14 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.21 4.49 -67.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.957 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds