Wall clock time and date at job start Mon Mar 30 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99593 * 2 1 4 4 O 1.20821 * 120.00244 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00013 * 179.97438 * 3 2 1 6 6 N 1.46506 * 112.84636 * 25.33440 * 5 3 2 7 7 C 1.34777 * 119.99772 * 309.66332 * 6 5 3 8 8 O 1.21286 * 120.00351 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99996 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47495 * 180.02562 * 9 7 6 11 11 C 1.52990 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47404 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99385 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99885 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00640 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99641 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46879 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47183 * 119.99987 * 16 14 12 19 19 H 1.48504 * 109.46891 * 240.00236 * 16 14 12 20 20 C 1.53780 * 113.61555 * 254.13973 * 5 3 2 21 21 C 1.53962 * 87.01608 * 220.04475 * 20 5 3 22 22 C 1.53780 * 87.11158 * 25.36395 * 21 20 5 23 23 H 1.08999 * 109.47406 * 60.00642 * 1 2 3 24 24 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47756 * 300.00179 * 1 2 3 26 26 H 0.96996 * 119.99759 * 129.66725 * 6 5 3 27 27 H 1.09002 * 109.47234 * 300.00329 * 9 7 6 28 28 H 1.08998 * 109.46986 * 59.99987 * 9 7 6 29 29 H 1.09002 * 109.46984 * 300.00281 * 10 9 7 30 30 H 1.08999 * 109.46452 * 59.99750 * 10 9 7 31 31 H 1.09002 * 109.47393 * 300.00121 * 11 10 9 32 32 H 1.09007 * 109.47559 * 59.99837 * 11 10 9 33 33 H 0.96997 * 120.00645 * 179.97438 * 15 14 12 34 34 H 1.09000 * 113.61461 * 334.56184 * 20 5 3 35 35 H 1.08995 * 113.61894 * 105.46921 * 20 5 3 36 36 H 1.08997 * 113.53543 * 270.80721 * 21 20 5 37 37 H 1.08998 * 113.73879 * 139.94319 * 21 20 5 38 38 H 1.09005 * 113.61134 * 220.09229 * 22 21 20 39 39 H 1.09002 * 113.69315 * 89.19485 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1985 0.0861 -0.5766 7 6 3.8372 -1.1416 -0.1539 8 8 2.9885 -1.2622 0.7040 9 6 4.4879 -2.3645 -0.7472 10 6 3.9017 -3.6199 -0.0981 11 6 4.5618 -4.8615 -0.7010 12 6 3.9848 -6.0980 -0.0612 13 1 3.2237 -6.0072 0.6996 14 6 4.4294 -7.3449 -0.4465 15 7 5.3573 -7.4554 -1.3718 16 14 3.7136 -8.8777 0.3461 17 1 2.6934 -8.4848 1.3511 18 1 3.0814 -9.7249 -0.6967 19 1 4.7977 -9.6416 1.0144 20 6 4.1607 1.6921 1.3561 21 6 5.1639 2.5483 0.5618 22 6 4.1140 2.5978 -0.5607 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 4.8771 0.1826 -1.2630 27 1 4.3019 -2.3904 -1.8209 28 1 5.5621 -2.3289 -0.5654 29 1 4.0874 -3.5943 0.9756 30 1 2.8276 -3.6552 -0.2804 31 1 4.3758 -4.8869 -1.7747 32 1 5.6361 -4.8264 -0.5192 33 1 5.6704 -8.3326 -1.6425 34 1 3.4774 2.2780 1.9709 35 1 4.6233 0.8697 1.9017 36 1 6.0721 2.0119 0.2869 37 1 5.3662 3.5194 1.0135 38 1 4.5388 2.5054 -1.5603 39 1 3.4172 3.4314 -0.4722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593998968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:51 Heat of formation + Delta-G solvation = -110.033314 kcal Electronic energy + Delta-G solvation = -21016.638644 eV Core-core repulsion = 17732.018989 eV Total energy + Delta-G solvation = -3284.619655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27613 -39.28630 -38.18289 -36.17042 -34.14909 -33.18849 -31.94766 -28.59899 -27.64942 -26.19494 -25.95362 -23.80635 -21.78073 -20.96798 -19.73908 -19.28459 -17.96322 -17.25437 -16.56018 -16.35753 -15.93591 -15.63435 -15.08325 -14.89414 -14.40807 -13.94897 -13.54105 -13.32845 -13.20995 -12.73808 -12.30943 -12.23066 -12.02729 -11.80078 -11.69662 -11.34760 -11.29048 -10.91913 -10.81436 -10.65340 -10.57989 -10.50937 -10.38135 -9.65801 -9.56621 -9.24008 -9.10769 -8.98344 -8.31559 -5.97042 -3.98237 2.06950 2.79005 2.99146 3.07553 3.33962 3.41368 3.46984 3.97186 4.19769 4.41726 4.49952 4.61219 4.94427 5.18479 5.25598 5.25978 5.28762 5.39275 5.39583 5.52007 5.59129 5.62749 5.68247 5.73913 5.74743 5.86731 6.27215 6.37360 6.45560 6.75353 6.95431 7.18420 7.54133 7.72628 7.77484 7.85323 8.04027 8.47705 8.50165 9.09254 9.65837 11.14518 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.003864 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.711602 B = 7243.842515 C = 7846.796827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.468 3.532 4 O -0.519 6.519 5 C 0.153 3.847 6 N -0.720 5.720 7 C 0.507 3.493 8 O -0.494 6.494 9 C -0.134 4.134 10 C -0.093 4.093 11 C 0.020 3.980 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.123 4.123 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.405 0.595 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 20.986 0.462 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.219 6.219 3 C 0.311 3.689 4 O -0.409 6.409 5 C 0.063 3.937 6 N -0.377 5.377 7 C 0.295 3.705 8 O -0.366 6.366 9 C -0.174 4.174 10 C -0.131 4.131 11 C -0.018 4.018 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.168 4.168 21 C -0.172 4.172 22 C -0.160 4.160 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.076 0.924 26 H 0.241 0.759 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.995 20.994 1.011 21.113 hybrid contribution -0.260 -0.831 -0.041 0.872 sum -2.254 20.163 0.969 20.312 Atomic orbital electron populations 1.23274 0.78111 1.03708 1.01512 1.87118 1.21879 1.31005 1.81906 1.23785 0.91331 0.82087 0.71738 1.90624 1.66525 1.36858 1.46865 1.21157 0.85605 0.88259 0.98634 1.45899 1.43911 1.04145 1.43735 1.21323 0.82405 0.84036 0.82740 1.90723 1.29915 1.85726 1.30224 1.21816 1.01128 0.92801 1.01675 1.21431 0.99980 0.92238 0.99488 1.19140 0.95755 0.90835 0.96023 1.21311 1.21688 0.91028 1.21424 0.92540 1.25012 0.95151 0.99140 0.95198 1.69966 1.29551 1.23599 1.30654 0.86556 0.79059 0.83216 0.79320 1.19690 1.21062 1.21061 1.23317 0.98405 1.00409 0.94674 1.22864 0.97089 1.00834 0.96444 1.23261 0.98568 0.94566 0.99644 0.92624 0.88121 0.92381 0.75893 0.89467 0.89426 0.92731 0.92633 0.96637 0.96641 0.93145 0.88809 0.89538 0.89285 0.90196 0.89846 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.31 -4.90 6.31 -47.60 -0.30 -5.20 16 3 C 0.47 6.87 7.07 36.01 0.25 7.12 16 4 O -0.52 -8.12 15.79 -18.75 -0.30 -8.41 16 5 C 0.15 1.75 1.11 -132.15 -0.15 1.61 16 6 N -0.72 -8.17 5.21 -47.92 -0.25 -8.42 16 7 C 0.51 7.75 7.18 -10.99 -0.08 7.67 16 8 O -0.49 -9.24 12.51 -19.68 -0.25 -9.49 16 9 C -0.13 -2.13 5.70 -27.88 -0.16 -2.29 16 10 C -0.09 -1.97 4.44 -26.73 -0.12 -2.08 16 11 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 12 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.61 5.46 -17.83 -0.10 1.51 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.13 -1.32 7.43 -25.82 -0.19 -1.51 16 21 C -0.13 -0.97 8.00 -25.82 -0.21 -1.17 16 22 C -0.12 -1.00 7.23 -25.92 -0.19 -1.19 16 23 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 26 H 0.41 3.29 8.63 -40.82 -0.35 2.94 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.11 0.96 7.38 -51.93 -0.38 0.57 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -34.32 328.08 -6.94 -41.26 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.19 Total: -1.65 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.32 Total: -3.68 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.49 Total: -34.64 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.84 Total: -23.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.32 -6.94 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.777 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds