Wall clock time and date at job start Mon Mar 30 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99593 * 2 1 4 4 O 1.20821 * 120.00244 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00013 * 179.97438 * 3 2 1 6 6 N 1.46506 * 112.84636 * 25.33440 * 5 3 2 7 7 C 1.34777 * 119.99772 * 309.66332 * 6 5 3 8 8 O 1.21286 * 120.00351 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99996 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47495 * 180.02562 * 9 7 6 11 11 C 1.52990 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47404 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99385 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99885 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00640 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99641 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46879 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47183 * 119.99987 * 16 14 12 19 19 H 1.48504 * 109.46891 * 240.00236 * 16 14 12 20 20 C 1.53780 * 113.61555 * 254.13973 * 5 3 2 21 21 C 1.53962 * 87.01608 * 220.04475 * 20 5 3 22 22 C 1.53780 * 87.11158 * 25.36395 * 21 20 5 23 23 H 1.08999 * 109.47406 * 60.00642 * 1 2 3 24 24 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47756 * 300.00179 * 1 2 3 26 26 H 0.96996 * 119.99759 * 129.66725 * 6 5 3 27 27 H 1.09002 * 109.47234 * 300.00329 * 9 7 6 28 28 H 1.08998 * 109.46986 * 59.99987 * 9 7 6 29 29 H 1.09002 * 109.46984 * 300.00281 * 10 9 7 30 30 H 1.08999 * 109.46452 * 59.99750 * 10 9 7 31 31 H 1.09002 * 109.47393 * 300.00121 * 11 10 9 32 32 H 1.09007 * 109.47559 * 59.99837 * 11 10 9 33 33 H 0.96997 * 120.00645 * 179.97438 * 15 14 12 34 34 H 1.09000 * 113.61461 * 334.56184 * 20 5 3 35 35 H 1.08995 * 113.61894 * 105.46921 * 20 5 3 36 36 H 1.08997 * 113.53543 * 270.80721 * 21 20 5 37 37 H 1.08998 * 113.73879 * 139.94319 * 21 20 5 38 38 H 1.09005 * 113.61134 * 220.09229 * 22 21 20 39 39 H 1.09002 * 113.69315 * 89.19485 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1985 0.0861 -0.5766 7 6 3.8372 -1.1416 -0.1539 8 8 2.9885 -1.2622 0.7040 9 6 4.4879 -2.3645 -0.7472 10 6 3.9017 -3.6199 -0.0981 11 6 4.5618 -4.8615 -0.7010 12 6 3.9848 -6.0980 -0.0612 13 1 3.2237 -6.0072 0.6996 14 6 4.4294 -7.3449 -0.4465 15 7 5.3573 -7.4554 -1.3718 16 14 3.7136 -8.8777 0.3461 17 1 2.6934 -8.4848 1.3511 18 1 3.0814 -9.7249 -0.6967 19 1 4.7977 -9.6416 1.0144 20 6 4.1607 1.6921 1.3561 21 6 5.1639 2.5483 0.5618 22 6 4.1140 2.5978 -0.5607 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8900 26 1 4.8771 0.1826 -1.2630 27 1 4.3019 -2.3904 -1.8209 28 1 5.5621 -2.3289 -0.5654 29 1 4.0874 -3.5943 0.9756 30 1 2.8276 -3.6552 -0.2804 31 1 4.3758 -4.8869 -1.7747 32 1 5.6361 -4.8264 -0.5192 33 1 5.6704 -8.3326 -1.6425 34 1 3.4774 2.2780 1.9709 35 1 4.6233 0.8697 1.9017 36 1 6.0721 2.0119 0.2869 37 1 5.3662 3.5194 1.0135 38 1 4.5388 2.5054 -1.5603 39 1 3.4172 3.4314 -0.4722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593998968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:50 Heat of formation + Delta-G solvation = -131.740789 kcal Electronic energy + Delta-G solvation = -21017.579951 eV Core-core repulsion = 17732.018989 eV Total energy + Delta-G solvation = -3285.560962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27392 -40.43625 -39.19522 -37.31005 -36.04572 -34.28919 -33.84367 -29.99814 -29.04357 -27.06699 -26.85776 -25.60446 -22.87902 -22.34709 -21.18869 -20.22533 -19.01395 -18.62643 -18.17762 -17.55373 -17.27677 -16.58769 -16.47365 -16.35603 -15.68227 -15.15514 -14.84934 -14.51499 -14.39730 -14.18378 -13.73220 -13.55662 -13.21866 -13.00712 -12.98161 -12.60030 -12.56239 -12.47339 -12.34154 -11.93877 -11.77975 -11.64790 -11.49492 -11.42973 -11.34128 -11.19360 -10.57875 -10.52329 -10.13480 -8.18290 -6.27650 0.99090 1.40248 1.40929 1.54294 1.74835 1.86652 2.06892 2.43277 3.14985 3.20797 3.42680 3.70546 3.76526 3.95309 4.18349 4.23091 4.25301 4.34686 4.37258 4.61433 4.62526 4.71842 4.87248 4.88778 4.92202 5.04109 5.05661 5.16748 5.19158 5.25899 5.38158 5.49386 5.58621 5.80638 5.90989 6.30645 6.57946 6.67893 6.88454 7.37962 7.41318 8.93386 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.003864 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.711602 B = 7243.842515 C = 7846.796827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.459 3.541 4 O -0.537 6.537 5 C 0.140 3.860 6 N -0.699 5.699 7 C 0.511 3.489 8 O -0.533 6.533 9 C -0.126 4.126 10 C -0.079 4.079 11 C 0.025 3.975 12 C -0.544 4.544 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.136 4.136 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.424 0.576 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.000 1.000 32 H 0.001 0.999 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 21.928 0.139 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.243 6.243 3 C 0.303 3.697 4 O -0.427 6.427 5 C 0.050 3.950 6 N -0.356 5.356 7 C 0.299 3.701 8 O -0.409 6.409 9 C -0.165 4.165 10 C -0.118 4.118 11 C -0.012 4.012 12 C -0.582 4.582 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.078 0.922 26 H 0.263 0.737 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.125 21.968 0.662 22.006 hybrid contribution -0.552 -1.109 0.059 1.240 sum -1.676 20.858 0.720 20.938 Atomic orbital electron populations 1.23415 0.77179 1.04441 1.02084 1.87109 1.23176 1.32025 1.81997 1.24492 0.92683 0.81501 0.71066 1.90599 1.67234 1.37115 1.47765 1.21575 0.83655 0.89387 1.00361 1.45563 1.43592 1.03020 1.43452 1.21076 0.81833 0.84970 0.82233 1.90720 1.31688 1.86405 1.32058 1.21632 1.02038 0.90790 1.02083 1.21126 0.98837 0.93062 0.98743 1.19031 0.95011 0.92130 0.95034 1.21726 1.21990 0.92760 1.21773 0.93123 1.25870 0.95427 1.02435 0.95658 1.70063 1.30532 1.24699 1.31693 0.85488 0.78494 0.79076 0.78538 1.19252 1.20169 1.20127 1.23379 0.99284 1.00626 0.94150 1.22858 0.96531 1.01188 0.94791 1.23282 0.98343 0.91927 1.01326 0.91655 0.87394 0.92200 0.73654 0.87765 0.87225 0.94046 0.94182 0.98183 0.98022 0.92721 0.89309 0.90905 0.87722 0.88369 0.87353 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.56 113.37 1.20 1.78 16 2 O -0.33 -10.62 6.31 -43.42 -0.27 -10.90 16 3 C 0.46 13.27 7.07 71.24 0.50 13.77 16 4 O -0.54 -16.60 15.79 21.98 0.35 -16.26 16 5 C 0.14 2.97 1.11 3.38 0.00 2.98 16 6 N -0.70 -14.40 5.21 -423.90 -2.21 -16.61 16 7 C 0.51 15.11 7.18 87.66 0.63 15.74 16 8 O -0.53 -20.10 12.51 21.07 0.26 -19.83 16 9 C -0.13 -3.84 5.70 29.85 0.17 -3.67 16 10 C -0.08 -3.39 4.44 30.59 0.14 -3.26 16 11 C 0.03 1.31 4.97 29.85 0.15 1.45 16 12 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -56.03 13.29 21.44 0.28 -55.74 16 16 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C -0.14 -2.57 7.43 31.18 0.23 -2.34 16 21 C -0.12 -1.28 8.00 31.18 0.25 -1.03 16 22 C -0.11 -1.48 7.23 31.12 0.23 -1.26 16 23 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 24 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.42 5.48 8.63 -92.71 -0.80 4.68 16 27 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.93 8.11 -2.38 -0.02 0.91 16 39 H 0.10 1.57 7.38 -2.39 -0.02 1.56 16 Total: -1.00 -75.11 328.08 4.87 -70.24 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.24 Total: 8.77 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.19 Total: -6.64 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.92 Total: -72.35 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: 0.34 Total: -46.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.11 4.87 -70.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.501 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds