Wall clock time and date at job start Mon Mar 30 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 117.00247 * 2 1 4 4 O 1.20829 * 119.99555 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.91569 * 303.90288 * 5 3 2 7 7 C 1.55156 * 111.00502 * 67.80494 * 5 3 2 8 8 C 1.54330 * 103.02033 * 153.37936 * 7 5 3 9 9 N 1.47023 * 107.26824 * 338.14375 * 8 7 5 10 10 C 1.34770 * 125.65130 * 178.84547 * 9 8 7 11 11 O 1.21279 * 120.00401 * 179.68880 * 10 9 8 12 12 C 1.50701 * 119.99907 * 359.69406 * 10 9 8 13 13 C 1.53001 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46872 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.46973 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.47424 * 108.70199 * 358.58291 * 9 8 7 24 24 H 1.09003 * 109.47318 * 299.99986 * 1 2 3 25 25 H 1.09005 * 109.47242 * 59.99661 * 1 2 3 26 26 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08998 * 110.71751 * 271.94120 * 7 5 3 28 28 H 1.09000 * 110.71568 * 35.03594 * 7 5 3 29 29 H 1.09002 * 109.99277 * 218.66420 * 8 7 5 30 30 H 1.08999 * 109.77619 * 97.49888 * 8 7 5 31 31 H 1.09007 * 109.47332 * 59.99814 * 12 10 9 32 32 H 1.09000 * 109.47322 * 299.99851 * 12 10 9 33 33 H 1.08996 * 109.46845 * 60.00399 * 13 12 10 34 34 H 1.08996 * 109.47077 * 299.99569 * 13 12 10 35 35 H 1.08994 * 109.48028 * 60.00123 * 14 13 12 36 36 H 1.09000 * 109.47206 * 299.99977 * 14 13 12 37 37 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.36753 * 143.19133 * 23 9 8 39 39 H 1.09000 * 110.36811 * 265.41047 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9843 0.7282 0.8460 7 6 4.1509 0.7573 -1.3402 8 6 5.4928 1.5117 -1.4488 9 7 5.3912 2.7074 -0.5993 10 6 6.3653 3.6185 -0.4056 11 8 6.1679 4.5733 0.3156 12 6 7.6998 3.4507 -1.0853 13 6 8.6176 4.6130 -0.7009 14 6 9.9723 4.4430 -1.3915 15 6 10.8765 5.5874 -1.0123 16 1 10.5208 6.3585 -0.3452 17 6 12.1584 5.6494 -1.5164 18 7 12.9477 6.6478 -1.1851 19 14 12.7740 4.3152 -2.6697 20 1 13.4042 3.2283 -1.8779 21 1 13.7746 4.8912 -3.6037 22 1 11.6327 3.7653 -3.4445 23 6 4.0452 2.7481 0.0006 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3134 -0.3198 -1.2998 28 1 3.4957 1.0161 -2.1720 29 1 5.6725 1.8058 -2.4829 30 1 6.3038 0.8744 -1.0962 31 1 7.5586 3.4420 -2.1662 32 1 8.1524 2.5105 -0.7704 33 1 8.7590 4.6221 0.3798 34 1 8.1650 5.5530 -1.0162 35 1 9.8307 4.4340 -2.4722 36 1 10.4252 3.5028 -1.0767 37 1 13.8493 6.6916 -1.5400 38 1 4.0955 3.1306 1.0200 39 1 3.3794 3.3651 -0.6029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594241498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:17 Heat of formation + Delta-G solvation = -131.862937 kcal Electronic energy + Delta-G solvation = -20111.677260 eV Core-core repulsion = 16826.111002 eV Total energy + Delta-G solvation = -3285.566259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16700 -39.83683 -37.65672 -36.74937 -34.31087 -32.49381 -31.91116 -29.68523 -28.71325 -27.90320 -24.97623 -23.10807 -22.77503 -20.73782 -20.12670 -19.22559 -18.20914 -17.30408 -17.16889 -16.61172 -16.53746 -15.76859 -15.32509 -14.77123 -14.20405 -14.05813 -13.98470 -13.71914 -13.42931 -12.90216 -12.79366 -12.61202 -12.49100 -12.23780 -11.95578 -11.75694 -11.61054 -11.36840 -11.25637 -10.96730 -10.81860 -10.77372 -10.00524 -9.83746 -9.68642 -9.45318 -9.12158 -8.75951 -8.49727 -5.99224 -3.96974 1.72107 2.11915 2.80579 2.98213 3.32292 3.39391 3.42219 3.83755 3.99552 4.32882 4.48185 4.60271 4.66524 4.73629 4.77722 4.82148 4.92563 5.08721 5.24501 5.33536 5.33907 5.48242 5.50392 5.56775 5.64231 5.66292 5.90155 6.04376 6.16333 6.57254 6.70288 6.93138 7.26625 7.37081 7.45749 7.47076 7.83971 8.30144 8.60863 9.07743 9.62677 11.14494 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051636 B = 0.002951 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.123943 B = 9487.466516 C = 9929.259806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.100 4.100 6 H 0.125 0.875 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.630 5.630 10 C 0.530 3.470 11 O -0.529 6.529 12 C -0.135 4.135 13 C -0.089 4.089 14 C -0.014 4.014 15 C -0.518 4.518 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.904 5.904 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.122 3.878 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.087 0.913 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.508 -19.311 -0.926 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.386 6.386 5 C -0.120 4.120 6 H 0.143 0.857 7 C -0.155 4.155 8 C -0.022 4.022 9 N -0.367 5.367 10 C 0.321 3.679 11 O -0.404 6.404 12 C -0.175 4.175 13 C -0.127 4.127 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.001 4.001 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.582 -18.334 -0.551 29.876 hybrid contribution 0.147 -0.715 -0.614 0.954 sum -23.435 -19.049 -1.165 30.223 Atomic orbital electron populations 1.23310 0.75987 1.03865 1.02757 1.86502 1.23653 1.33145 1.84007 1.23290 0.91293 0.81489 0.72318 1.90715 1.66958 1.36300 1.44622 1.22192 0.87730 0.99888 1.02192 0.85738 1.22646 0.96179 1.01467 0.95173 1.22051 0.97610 0.86647 0.95931 1.48611 1.13470 1.25683 1.48943 1.20939 0.85171 0.80670 0.81133 1.90717 1.81420 1.30061 1.38182 1.21864 0.91597 1.03040 1.00989 1.21292 0.94921 0.95252 1.01198 1.19602 0.92616 0.97251 0.95655 1.21166 0.96983 1.08337 1.29155 0.90925 1.25060 0.96763 0.95649 0.96242 1.69925 1.07984 1.31254 1.45200 0.86753 0.78725 0.82314 0.81294 1.20362 1.21472 1.19039 1.21968 0.84164 0.93014 1.00939 0.91735 0.91755 0.87905 0.88378 0.89959 0.90456 0.90410 0.89334 0.89302 0.92035 0.92019 0.96653 0.97089 0.92806 0.89480 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.73 10.57 -39.27 -0.41 -3.14 16 3 C 0.47 4.32 7.27 36.01 0.26 4.58 16 4 O -0.50 -6.09 15.47 -18.75 -0.29 -6.38 16 5 C -0.10 -0.77 3.55 -89.62 -0.32 -1.09 16 6 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.12 -0.69 6.41 -24.89 -0.16 -0.85 16 8 C 0.10 0.79 6.49 -3.06 -0.02 0.77 16 9 N -0.63 -7.59 3.33 -170.51 -0.57 -8.16 16 10 C 0.53 8.53 7.85 -10.99 -0.09 8.44 16 11 O -0.53 -10.78 16.24 5.56 0.09 -10.69 16 12 C -0.14 -2.11 4.89 -27.88 -0.14 -2.25 16 13 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 14 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 16 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 19 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 23 C 0.12 1.36 6.02 -2.53 -0.02 1.35 16 24 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 26 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 34 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 39 H 0.08 1.00 7.41 -51.93 -0.38 0.61 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -36.27 328.43 -6.41 -42.68 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -6.22 Total: -4.68 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.07 Total: -3.96 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.21 Total: -35.85 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.61 Total: -20.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.27 -6.41 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594241498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.181 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds