Wall clock time and date at job start Mon Mar 30 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 117.00247 * 2 1 4 4 O 1.20829 * 119.99555 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.91569 * 303.90288 * 5 3 2 7 7 C 1.55156 * 111.00502 * 67.80494 * 5 3 2 8 8 C 1.54330 * 103.02033 * 153.37936 * 7 5 3 9 9 N 1.47023 * 107.26824 * 338.14375 * 8 7 5 10 10 C 1.34770 * 125.65130 * 178.84547 * 9 8 7 11 11 O 1.21279 * 120.00401 * 179.68880 * 10 9 8 12 12 C 1.50701 * 119.99907 * 359.69406 * 10 9 8 13 13 C 1.53001 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46872 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.46973 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.47424 * 108.70199 * 358.58291 * 9 8 7 24 24 H 1.09003 * 109.47318 * 299.99986 * 1 2 3 25 25 H 1.09005 * 109.47242 * 59.99661 * 1 2 3 26 26 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08998 * 110.71751 * 271.94120 * 7 5 3 28 28 H 1.09000 * 110.71568 * 35.03594 * 7 5 3 29 29 H 1.09002 * 109.99277 * 218.66420 * 8 7 5 30 30 H 1.08999 * 109.77619 * 97.49888 * 8 7 5 31 31 H 1.09007 * 109.47332 * 59.99814 * 12 10 9 32 32 H 1.09000 * 109.47322 * 299.99851 * 12 10 9 33 33 H 1.08996 * 109.46845 * 60.00399 * 13 12 10 34 34 H 1.08996 * 109.47077 * 299.99569 * 13 12 10 35 35 H 1.08994 * 109.48028 * 60.00123 * 14 13 12 36 36 H 1.09000 * 109.47206 * 299.99977 * 14 13 12 37 37 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.36753 * 143.19133 * 23 9 8 39 39 H 1.09000 * 110.36811 * 265.41047 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9843 0.7282 0.8460 7 6 4.1509 0.7573 -1.3402 8 6 5.4928 1.5117 -1.4488 9 7 5.3912 2.7074 -0.5993 10 6 6.3653 3.6185 -0.4056 11 8 6.1679 4.5733 0.3156 12 6 7.6998 3.4507 -1.0853 13 6 8.6176 4.6130 -0.7009 14 6 9.9723 4.4430 -1.3915 15 6 10.8765 5.5874 -1.0123 16 1 10.5208 6.3585 -0.3452 17 6 12.1584 5.6494 -1.5164 18 7 12.9477 6.6478 -1.1851 19 14 12.7740 4.3152 -2.6697 20 1 13.4042 3.2283 -1.8779 21 1 13.7746 4.8912 -3.6037 22 1 11.6327 3.7653 -3.4445 23 6 4.0452 2.7481 0.0006 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.3134 -0.3198 -1.2998 28 1 3.4957 1.0161 -2.1720 29 1 5.6725 1.8058 -2.4829 30 1 6.3038 0.8744 -1.0962 31 1 7.5586 3.4420 -2.1662 32 1 8.1524 2.5105 -0.7704 33 1 8.7590 4.6221 0.3798 34 1 8.1650 5.5530 -1.0162 35 1 9.8307 4.4340 -2.4722 36 1 10.4252 3.5028 -1.0767 37 1 13.8493 6.6916 -1.5400 38 1 4.0955 3.1306 1.0200 39 1 3.3794 3.3651 -0.6029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594241498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:17 Heat of formation + Delta-G solvation = -156.947936 kcal Electronic energy + Delta-G solvation = -20112.765028 eV Core-core repulsion = 16826.111002 eV Total energy + Delta-G solvation = -3286.654026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90158 -40.86759 -38.59876 -37.49492 -36.13410 -34.17202 -33.20138 -30.53847 -30.04889 -28.66900 -26.29003 -24.50073 -23.47108 -21.97795 -21.32142 -20.30613 -18.93982 -18.84301 -18.17236 -17.93600 -17.28302 -16.79632 -16.52906 -16.17216 -15.68338 -15.09165 -14.77162 -14.71885 -14.55864 -14.13168 -13.93138 -13.79582 -13.71334 -13.19448 -13.08221 -12.84474 -12.64816 -12.49132 -12.39401 -11.93832 -11.82848 -11.76790 -11.71864 -11.53072 -11.47289 -11.31153 -10.87581 -10.73194 -9.73857 -8.25892 -6.31825 1.03500 1.40412 1.44017 1.44635 1.56621 1.60800 2.08354 2.41290 3.09172 3.11775 3.40172 3.76397 3.80095 4.05282 4.13970 4.19014 4.22276 4.28176 4.31104 4.32849 4.56350 4.71749 4.73675 4.75054 4.81315 4.92654 4.93360 4.97909 5.05056 5.11148 5.26437 5.30464 5.56912 5.61672 5.69496 6.31900 6.41728 6.61110 6.77039 7.12542 7.32466 8.91880 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051636 B = 0.002951 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.123943 B = 9487.466516 C = 9929.259806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.478 3.522 4 O -0.539 6.539 5 C -0.090 4.090 6 H 0.147 0.853 7 C -0.105 4.105 8 C 0.090 3.910 9 N -0.622 5.622 10 C 0.526 3.474 11 O -0.590 6.590 12 C -0.122 4.122 13 C -0.083 4.083 14 C -0.008 4.008 15 C -0.541 4.541 16 H 0.017 0.983 17 C -0.006 4.006 18 N -0.958 5.958 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.233 1.233 23 C 0.117 3.883 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.066 0.934 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.977 -24.024 -3.088 34.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.322 3.678 4 O -0.429 6.429 5 C -0.110 4.110 6 H 0.164 0.836 7 C -0.142 4.142 8 C -0.032 4.032 9 N -0.357 5.357 10 C 0.317 3.683 11 O -0.470 6.470 12 C -0.161 4.161 13 C -0.121 4.121 14 C -0.045 4.045 15 C -0.579 4.579 16 H 0.035 0.965 17 C -0.202 4.202 18 N -0.599 5.599 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.156 1.156 23 C -0.007 4.007 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.100 -23.121 -2.730 33.509 hybrid contribution 0.198 0.820 0.136 0.854 sum -23.902 -22.302 -2.595 32.793 Atomic orbital electron populations 1.23581 0.74677 1.05884 1.02466 1.86493 1.24920 1.32002 1.83424 1.23515 0.91743 0.81349 0.71178 1.90711 1.67877 1.37658 1.46617 1.22137 0.86979 0.97342 1.04523 0.83556 1.22708 0.94793 1.03094 0.93651 1.22481 0.99578 0.85181 0.95924 1.48556 1.12658 1.25910 1.48538 1.21009 0.86129 0.80574 0.80627 1.90699 1.82547 1.32782 1.40983 1.21698 0.90199 1.01617 1.02569 1.21069 0.94917 0.96748 0.99347 1.19536 0.92726 0.95566 0.96663 1.21568 0.98600 1.09141 1.28559 0.96466 1.26246 0.96729 0.98789 0.98397 1.70116 1.08656 1.34076 1.47059 0.85461 0.78887 0.78441 0.78606 1.18774 1.21386 1.15585 1.21943 0.83695 0.95623 0.99390 0.92237 0.91960 0.84717 0.84948 0.89738 0.89025 0.87960 0.86466 0.85963 0.94532 0.94804 0.94990 0.94940 0.92537 0.91582 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.52 10.57 -51.45 -0.54 -5.07 16 3 C 0.48 8.00 7.27 71.24 0.52 8.51 16 4 O -0.54 -13.16 15.47 21.95 0.34 -12.82 16 5 C -0.09 -1.18 3.55 -10.15 -0.04 -1.21 16 6 H 0.15 1.32 8.14 -2.38 -0.02 1.30 16 7 C -0.10 -0.78 6.41 31.78 0.20 -0.58 16 8 C 0.09 1.00 6.49 86.73 0.56 1.57 16 9 N -0.62 -13.87 3.33 -811.78 -2.70 -16.57 16 10 C 0.53 16.57 7.85 87.66 0.69 17.26 16 11 O -0.59 -25.19 16.24 -3.03 -0.05 -25.24 16 12 C -0.12 -3.48 4.89 29.85 0.15 -3.33 16 13 C -0.08 -3.48 4.44 30.59 0.14 -3.34 16 14 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 15 C -0.54 -32.66 9.66 25.60 0.25 -32.41 16 16 H 0.02 1.17 7.99 -2.92 -0.02 1.15 16 17 C -0.01 -0.36 5.47 84.65 0.46 0.11 16 18 N -0.96 -62.19 13.96 21.45 0.30 -61.89 16 19 Si 0.96 43.59 27.47 68.60 1.88 45.48 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.23 -9.27 6.54 99.48 0.65 -8.62 16 23 C 0.12 2.57 6.02 86.86 0.52 3.09 16 24 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 25 H 0.06 0.58 8.13 -2.38 -0.02 0.56 16 26 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.08 0.65 8.03 -2.39 -0.02 0.63 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 2.72 8.14 -2.38 -0.02 2.71 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.03 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 36 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 37 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.07 1.71 8.04 -2.39 -0.02 1.70 16 39 H 0.06 1.65 7.41 -2.39 -0.02 1.63 16 Total: -1.00 -85.49 328.43 4.97 -80.53 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.97 Total: 4.72 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.77 Total: -9.14 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.40 Total: -78.46 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.25 Total: -43.12 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -85.49 4.97 -80.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594241498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.421 kcal (2) G-P(sol) polarization free energy of solvation -85.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds