Wall clock time and date at job start Mon Mar 30 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00100 * 2 1 4 4 O 1.20827 * 119.99716 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99992 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.89008 * 56.11577 * 5 3 2 7 7 C 1.55164 * 111.03127 * 292.21179 * 5 3 2 8 8 C 1.54330 * 102.94081 * 206.40946 * 7 5 3 9 9 N 1.47026 * 107.26840 * 22.19556 * 8 7 5 10 10 C 1.34775 * 125.64611 * 181.02123 * 9 8 7 11 11 O 1.21283 * 120.00103 * 180.02562 * 10 9 8 12 12 C 1.50704 * 119.99927 * 0.02745 * 10 9 8 13 13 C 1.53001 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46972 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.46948 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99784 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00225 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00095 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47511 * 90.00239 * 19 17 15 21 21 H 1.48503 * 109.47096 * 210.00265 * 19 17 15 22 22 H 1.48506 * 109.47330 * 329.99894 * 19 17 15 23 23 C 1.47422 * 108.70500 * 1.05856 * 9 8 7 24 24 H 1.09001 * 109.46962 * 300.00013 * 1 2 3 25 25 H 1.09004 * 109.47029 * 59.99190 * 1 2 3 26 26 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.71932 * 88.05279 * 7 5 3 28 28 H 1.08995 * 110.72046 * 324.77534 * 7 5 3 29 29 H 1.08998 * 109.88224 * 262.77875 * 8 7 5 30 30 H 1.08998 * 109.88221 * 141.61268 * 8 7 5 31 31 H 1.09002 * 109.46914 * 299.99993 * 12 10 9 32 32 H 1.08991 * 109.47478 * 59.99879 * 12 10 9 33 33 H 1.08997 * 109.46940 * 299.99378 * 13 12 10 34 34 H 1.08998 * 109.47443 * 60.00259 * 13 12 10 35 35 H 1.09002 * 109.47006 * 299.99985 * 14 13 12 36 36 H 1.08999 * 109.47208 * 60.00136 * 14 13 12 37 37 H 0.96997 * 120.00259 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.36785 * 94.70778 * 23 9 8 39 39 H 1.08996 * 110.36873 * 217.03180 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9839 0.7284 -0.8462 7 6 4.1516 0.7569 1.3399 8 6 5.4956 1.5084 1.4435 9 7 5.3916 2.7072 0.5987 10 6 6.3656 3.6183 0.4047 11 8 6.1679 4.5732 -0.3165 12 6 7.7004 3.4506 1.0839 13 6 8.6180 4.6129 0.6992 14 6 9.9730 4.4430 1.3893 15 6 10.8769 5.5875 1.0098 16 1 10.5209 6.3587 0.3429 17 6 12.1590 5.6495 1.5134 18 7 12.9481 6.6480 1.1819 19 14 12.7751 4.3152 2.6664 20 1 13.4050 3.2285 1.8744 21 1 13.7760 4.8913 3.6001 22 1 11.6341 3.7652 3.4417 23 6 4.0452 2.7481 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.3142 -0.3201 1.2992 28 1 3.4985 1.0183 2.1724 29 1 6.3048 0.8718 1.0857 30 1 5.6793 1.7987 2.4779 31 1 7.5595 3.4418 2.1648 32 1 8.1528 2.5104 0.7689 33 1 8.7590 4.6221 -0.3816 34 1 8.1654 5.5530 1.0147 35 1 9.8316 4.4340 2.4701 36 1 10.4258 3.5029 1.0742 37 1 13.8499 6.6918 1.5364 38 1 3.3793 3.3633 0.6046 39 1 4.0950 3.1308 -1.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594241499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:19 Heat of formation + Delta-G solvation = -156.921534 kcal Electronic energy + Delta-G solvation = -20112.810857 eV Core-core repulsion = 16826.157976 eV Total energy + Delta-G solvation = -3286.652881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.90219 -40.86710 -38.59975 -37.49478 -36.13411 -34.17220 -33.20052 -30.53878 -30.04910 -28.66900 -26.28920 -24.50032 -23.47024 -21.97783 -21.32090 -20.30524 -18.94022 -18.84409 -18.17205 -17.93501 -17.28386 -16.79559 -16.52932 -16.17344 -15.68155 -15.09217 -14.77201 -14.72022 -14.55798 -14.13032 -13.93250 -13.79526 -13.71005 -13.19450 -13.08431 -12.84483 -12.64840 -12.49136 -12.39395 -11.93857 -11.82840 -11.76763 -11.71860 -11.53154 -11.47330 -11.31154 -10.87578 -10.73211 -9.73826 -8.25874 -6.31830 1.03542 1.40414 1.43997 1.44637 1.56612 1.60884 2.08315 2.41288 3.09179 3.11838 3.40102 3.76337 3.80114 4.05397 4.13998 4.19209 4.22201 4.28211 4.31164 4.32841 4.56300 4.71747 4.73682 4.74971 4.81345 4.92636 4.93326 4.97845 5.05041 5.11271 5.26406 5.30473 5.56894 5.61659 5.69500 6.31892 6.41722 6.61136 6.77039 7.12543 7.32472 8.91893 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051641 B = 0.002950 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.072411 B = 9487.648032 C = 9929.447216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.478 3.522 4 O -0.539 6.539 5 C -0.090 4.090 6 H 0.147 0.853 7 C -0.105 4.105 8 C 0.089 3.911 9 N -0.622 5.622 10 C 0.526 3.474 11 O -0.590 6.590 12 C -0.122 4.122 13 C -0.083 4.083 14 C -0.008 4.008 15 C -0.541 4.541 16 H 0.017 0.983 17 C -0.006 4.006 18 N -0.958 5.958 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.233 1.233 23 C 0.117 3.883 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.972 -24.032 3.087 34.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.322 3.678 4 O -0.429 6.429 5 C -0.110 4.110 6 H 0.164 0.836 7 C -0.142 4.142 8 C -0.032 4.032 9 N -0.357 5.357 10 C 0.317 3.683 11 O -0.470 6.470 12 C -0.161 4.161 13 C -0.121 4.121 14 C -0.045 4.045 15 C -0.579 4.579 16 H 0.035 0.965 17 C -0.202 4.202 18 N -0.599 5.599 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.156 1.156 23 C -0.006 4.006 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.096 -23.128 2.731 33.511 hybrid contribution 0.199 0.820 -0.138 0.855 sum -23.897 -22.308 2.593 32.794 Atomic orbital electron populations 1.23583 0.74673 1.05883 1.02467 1.86494 1.24923 1.32002 1.83423 1.23512 0.91744 0.81350 0.71179 1.90710 1.67878 1.37659 1.46619 1.22141 0.86984 0.97354 1.04531 0.83566 1.22714 0.94746 1.03111 0.93657 1.22486 0.99552 0.85110 0.96034 1.48557 1.12618 1.25766 1.48725 1.21012 0.86125 0.80591 0.80614 1.90700 1.82538 1.32811 1.40964 1.21696 0.90193 1.01615 1.02573 1.21071 0.94918 0.96748 0.99348 1.19537 0.92724 0.95566 0.96663 1.21567 0.98591 1.09137 1.28575 0.96467 1.26245 0.96732 0.98789 0.98393 1.70114 1.08654 1.34075 1.47065 0.85461 0.78886 0.78441 0.78608 1.18774 1.21386 1.15585 1.21943 0.83686 0.95630 0.99387 0.91953 0.92243 0.84716 0.84943 0.89713 0.87954 0.89028 0.86468 0.85963 0.94533 0.94805 0.94991 0.94938 0.92536 0.91690 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.52 10.57 -51.41 -0.54 -5.07 16 3 C 0.48 8.00 7.28 71.24 0.52 8.51 16 4 O -0.54 -13.16 15.47 21.96 0.34 -12.82 16 5 C -0.09 -1.18 3.54 -10.15 -0.04 -1.21 16 6 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 7 C -0.10 -0.78 6.41 31.79 0.20 -0.58 16 8 C 0.09 1.00 6.49 86.73 0.56 1.56 16 9 N -0.62 -13.87 3.33 -811.79 -2.70 -16.57 16 10 C 0.53 16.57 7.85 87.66 0.69 17.26 16 11 O -0.59 -25.19 16.24 -3.04 -0.05 -25.24 16 12 C -0.12 -3.48 4.89 29.85 0.15 -3.33 16 13 C -0.08 -3.48 4.44 30.60 0.14 -3.34 16 14 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 15 C -0.54 -32.66 9.66 25.60 0.25 -32.41 16 16 H 0.02 1.17 7.99 -2.91 -0.02 1.15 16 17 C -0.01 -0.36 5.47 84.65 0.46 0.11 16 18 N -0.96 -62.19 13.96 21.45 0.30 -61.89 16 19 Si 0.96 43.59 27.47 68.60 1.88 45.48 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.23 -9.27 6.54 99.48 0.65 -8.62 16 23 C 0.12 2.57 6.03 86.86 0.52 3.09 16 24 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 25 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 26 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.08 0.65 8.03 -2.39 -0.02 0.63 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.03 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 36 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 37 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.06 1.65 7.40 -2.39 -0.02 1.63 16 39 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 Total: -1.00 -85.50 328.43 4.97 -80.54 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 0.97 Total: 4.72 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.77 Total: -9.14 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.40 Total: -78.46 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.25 Total: -43.13 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -85.50 4.97 -80.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594241499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.386 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds