Wall clock time and date at job start Mon Mar 30 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47403 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00755 * 2 1 3 5 5 C 1.50700 * 109.47114 * 184.99785 * 4 2 1 6 6 O 1.21278 * 120.00064 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99743 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46696 * 178.28015 * 8 7 5 10 10 C 1.50694 * 115.55361 * 65.14482 * 9 8 7 11 11 H 1.08002 * 119.99905 * 265.40478 * 10 9 8 12 12 C 1.37881 * 120.00084 * 85.39785 * 10 9 8 13 13 N 1.31513 * 120.00089 * 353.55893 * 12 10 9 14 14 Si 1.86802 * 119.99993 * 173.56114 * 12 10 9 15 15 H 1.48504 * 109.47289 * 59.99965 * 14 12 10 16 16 H 1.48495 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47009 * 300.00099 * 14 12 10 18 18 C 1.52999 * 117.50256 * 279.46774 * 9 8 7 19 19 C 1.53008 * 117.49693 * 210.80899 * 9 8 7 20 20 N 1.46503 * 109.46922 * 240.00434 * 2 1 3 21 21 C 1.34775 * 120.00356 * 84.99987 * 20 2 1 22 22 N 1.34774 * 120.00712 * 180.02562 * 21 20 2 23 23 O 1.21593 * 119.99426 * 359.97438 * 21 20 2 24 24 H 1.09008 * 109.46868 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 59.99320 * 1 2 3 27 27 H 1.09006 * 109.46870 * 304.99226 * 4 2 1 28 28 H 1.08993 * 109.47450 * 64.99183 * 4 2 1 29 29 H 0.96995 * 120.00114 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47277 * 298.27866 * 8 7 5 31 31 H 1.08995 * 109.46895 * 58.27990 * 8 7 5 32 32 H 0.97000 * 119.99874 * 185.06587 * 13 12 10 33 33 H 1.09006 * 117.49534 * 0.02562 * 18 9 8 34 34 H 1.08999 * 117.50453 * 145.02198 * 18 9 8 35 35 H 1.08996 * 117.49564 * 214.98094 * 19 9 8 36 36 H 1.09004 * 117.49344 * 359.97438 * 19 9 8 37 37 H 0.97003 * 119.99728 * 265.00139 * 20 2 1 38 38 H 0.97003 * 119.99371 * 359.97438 * 22 21 20 39 39 H 0.96993 * 120.00379 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 8 4.1450 -0.0212 0.4439 7 7 4.2149 -1.1800 2.3346 8 6 5.6750 -1.0771 2.3959 9 6 6.1814 -1.7608 3.6675 10 6 5.9601 -3.2498 3.7372 11 1 5.0863 -3.6431 4.2352 12 6 6.8732 -4.1099 3.1649 13 7 7.8685 -3.6321 2.4504 14 14 6.6965 -5.9541 3.4045 15 1 5.3904 -6.4015 2.8574 16 1 7.7971 -6.6533 2.6939 17 1 6.7618 -6.2735 4.8534 18 6 6.0959 -0.9720 4.9757 19 6 7.4542 -1.2050 4.3095 20 7 2.0183 -0.6905 -1.1963 21 6 2.1470 -0.0182 -2.3572 22 7 2.5957 -0.6535 -3.4579 23 8 1.8574 1.1615 -2.4118 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.6055 -0.2619 2.1369 28 1 1.7516 -1.7716 1.2054 29 1 3.7326 -1.6552 3.0290 30 1 6.1106 -1.5641 1.5234 31 1 5.9650 -0.0265 2.4081 32 1 8.4679 -4.2381 1.9873 33 1 5.6785 0.0340 4.9305 34 1 5.8799 -1.5300 5.8868 35 1 8.1312 -1.9163 4.7825 36 1 7.9310 -0.3525 3.8255 37 1 2.2489 -1.6317 -1.1527 38 1 2.8264 -1.5947 -3.4143 39 1 2.6879 -0.1697 -4.2934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594353985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:51 Heat of formation + Delta-G solvation = -59.231372 kcal Electronic energy + Delta-G solvation = -20834.142418 eV Core-core repulsion = 17584.018451 eV Total energy + Delta-G solvation = -3250.123967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96002 -38.90088 -36.80984 -35.49922 -33.58834 -33.27088 -32.02487 -30.83710 -28.36839 -26.03053 -25.00984 -22.28388 -21.23682 -20.62283 -19.75476 -19.32093 -18.20950 -17.16450 -16.69091 -16.03832 -15.57024 -14.98697 -14.87801 -14.70567 -14.32830 -14.01993 -13.86079 -13.26672 -12.98388 -12.71144 -12.33269 -12.24894 -11.84982 -11.63729 -11.49811 -11.05077 -10.98046 -10.95024 -10.59708 -10.30807 -10.11502 -9.69467 -9.58185 -9.30375 -9.01850 -8.85048 -8.54881 -8.30565 -8.09594 -6.12930 -4.22056 3.02773 3.21129 3.22328 3.28251 3.29285 3.44477 3.82296 4.29826 4.57660 4.77479 5.05334 5.15234 5.24637 5.30841 5.49113 5.54394 5.60476 5.73104 6.00207 6.03441 6.21615 6.30242 6.43678 6.54280 6.65916 6.66852 6.81790 6.86300 7.01901 7.05961 7.26791 7.39615 7.44792 7.75666 8.09959 8.28403 8.29600 8.78471 8.79868 8.88925 9.44803 10.94835 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.004580 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.771504 B = 6112.608871 C = 6538.729434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.177 3.823 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.497 3.503 6 O -0.546 6.546 7 N -0.705 5.705 8 C 0.165 3.835 9 C 0.027 3.973 10 C -0.501 4.501 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.210 4.210 19 C -0.148 4.148 20 N -0.727 5.727 21 C 0.713 3.287 22 N -0.871 5.871 23 O -0.601 6.601 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.399 0.601 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 1.545 -4.171 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.071 3.929 3 H 0.113 0.887 4 C -0.194 4.194 5 C 0.282 3.718 6 O -0.424 6.424 7 N -0.354 5.354 8 C 0.042 3.958 9 C 0.026 3.974 10 C -0.539 4.539 11 H 0.077 0.923 12 C -0.130 4.130 13 N -0.510 5.510 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.248 4.248 19 C -0.187 4.187 20 N -0.381 5.381 21 C 0.412 3.588 22 N -0.438 5.438 23 O -0.480 6.480 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.233 0.767 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.666 2.919 -4.703 12.912 hybrid contribution 0.211 -2.119 0.166 2.136 sum -11.454 0.800 -4.537 12.346 Atomic orbital electron populations 1.22218 0.95283 1.02004 1.02664 1.20489 0.92734 0.97866 0.81825 0.88694 1.22062 0.94224 1.03287 0.99795 1.20456 0.89407 0.79701 0.82215 1.90714 1.70164 1.42936 1.38599 1.46006 1.09099 1.54753 1.25511 1.20952 0.77621 0.97136 1.00139 1.19043 0.97470 0.93583 0.87285 1.20294 1.07731 0.88194 1.37640 0.92254 1.24990 0.94654 0.98563 0.94812 1.69969 1.16253 1.34921 1.29879 0.86696 0.77649 0.85377 0.78449 1.20297 1.21287 1.20166 1.23020 1.03193 0.99609 0.98928 1.22492 0.90712 1.01202 1.04257 1.44936 1.71060 1.13314 1.08807 1.15849 0.77607 0.84776 0.80614 1.42954 1.73878 1.14845 1.12144 1.90923 1.57879 1.14372 1.84822 0.91538 0.92534 0.91858 0.87661 0.88640 0.76710 0.91136 0.94616 0.92765 0.91648 0.90368 0.89846 0.91695 0.77304 0.77715 0.75764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.18 2.26 2.13 -67.93 -0.15 2.12 16 3 H 0.10 1.53 7.39 -51.93 -0.38 1.15 16 4 C -0.15 -1.79 5.24 -27.89 -0.15 -1.93 16 5 C 0.50 8.50 7.69 -10.98 -0.08 8.41 16 6 O -0.55 -11.59 15.35 5.56 0.09 -11.51 16 7 N -0.70 -12.76 5.48 -60.29 -0.33 -13.09 16 8 C 0.16 3.63 5.50 -4.04 -0.02 3.61 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.40 16 10 C -0.50 -12.45 8.63 -34.44 -0.30 -12.74 16 11 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 12 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 13 N -0.87 -23.76 12.91 55.43 0.72 -23.05 16 14 Si 0.89 19.91 29.55 -169.99 -5.02 14.89 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.21 -4.27 9.96 -26.69 -0.27 -4.53 16 19 C -0.15 -3.35 9.42 -26.69 -0.25 -3.60 16 20 N -0.73 -9.48 4.22 -58.68 -0.25 -9.73 16 21 C 0.71 10.67 8.80 -86.92 -0.77 9.91 16 22 N -0.87 -9.22 8.88 27.63 0.25 -8.97 16 23 O -0.60 -11.51 16.84 5.28 0.09 -11.42 16 24 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.40 6.50 8.36 -40.82 -0.34 6.16 16 30 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 4.37 8.62 -40.82 -0.35 4.02 16 38 H 0.40 3.11 8.84 -40.82 -0.36 2.74 16 39 H 0.41 3.82 8.93 -40.82 -0.36 3.45 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -32.93 335.97 -7.33 -40.26 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -6.00 Total: 15.39 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.94 Total: 2.16 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.38 Total: -54.84 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.93 -7.33 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594353985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.967 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds