Wall clock time and date at job start Mon Mar 30 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47403 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00755 * 2 1 3 5 5 C 1.50700 * 109.47114 * 184.99785 * 4 2 1 6 6 O 1.21278 * 120.00064 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99743 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46696 * 178.28015 * 8 7 5 10 10 C 1.50694 * 115.55361 * 65.14482 * 9 8 7 11 11 H 1.08002 * 119.99905 * 265.40478 * 10 9 8 12 12 C 1.37881 * 120.00084 * 85.39785 * 10 9 8 13 13 N 1.31513 * 120.00089 * 353.55893 * 12 10 9 14 14 Si 1.86802 * 119.99993 * 173.56114 * 12 10 9 15 15 H 1.48504 * 109.47289 * 59.99965 * 14 12 10 16 16 H 1.48495 * 109.47246 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47009 * 300.00099 * 14 12 10 18 18 C 1.52999 * 117.50256 * 279.46774 * 9 8 7 19 19 C 1.53008 * 117.49693 * 210.80899 * 9 8 7 20 20 N 1.46503 * 109.46922 * 240.00434 * 2 1 3 21 21 C 1.34775 * 120.00356 * 84.99987 * 20 2 1 22 22 N 1.34774 * 120.00712 * 180.02562 * 21 20 2 23 23 O 1.21593 * 119.99426 * 359.97438 * 21 20 2 24 24 H 1.09008 * 109.46868 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 59.99320 * 1 2 3 27 27 H 1.09006 * 109.46870 * 304.99226 * 4 2 1 28 28 H 1.08993 * 109.47450 * 64.99183 * 4 2 1 29 29 H 0.96995 * 120.00114 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47277 * 298.27866 * 8 7 5 31 31 H 1.08995 * 109.46895 * 58.27990 * 8 7 5 32 32 H 0.97000 * 119.99874 * 185.06587 * 13 12 10 33 33 H 1.09006 * 117.49534 * 0.02562 * 18 9 8 34 34 H 1.08999 * 117.50453 * 145.02198 * 18 9 8 35 35 H 1.08996 * 117.49564 * 214.98094 * 19 9 8 36 36 H 1.09004 * 117.49344 * 359.97438 * 19 9 8 37 37 H 0.97003 * 119.99728 * 265.00139 * 20 2 1 38 38 H 0.97003 * 119.99371 * 359.97438 * 22 21 20 39 39 H 0.96993 * 120.00379 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 8 4.1450 -0.0212 0.4439 7 7 4.2149 -1.1800 2.3346 8 6 5.6750 -1.0771 2.3959 9 6 6.1814 -1.7608 3.6675 10 6 5.9601 -3.2498 3.7372 11 1 5.0863 -3.6431 4.2352 12 6 6.8732 -4.1099 3.1649 13 7 7.8685 -3.6321 2.4504 14 14 6.6965 -5.9541 3.4045 15 1 5.3904 -6.4015 2.8574 16 1 7.7971 -6.6533 2.6939 17 1 6.7618 -6.2735 4.8534 18 6 6.0959 -0.9720 4.9757 19 6 7.4542 -1.2050 4.3095 20 7 2.0183 -0.6905 -1.1963 21 6 2.1470 -0.0182 -2.3572 22 7 2.5957 -0.6535 -3.4579 23 8 1.8574 1.1615 -2.4118 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.6055 -0.2619 2.1369 28 1 1.7516 -1.7716 1.2054 29 1 3.7326 -1.6552 3.0290 30 1 6.1106 -1.5641 1.5234 31 1 5.9650 -0.0265 2.4081 32 1 8.4679 -4.2381 1.9873 33 1 5.6785 0.0340 4.9305 34 1 5.8799 -1.5300 5.8868 35 1 8.1312 -1.9163 4.7825 36 1 7.9310 -0.3525 3.8255 37 1 2.2489 -1.6317 -1.1527 38 1 2.8264 -1.5947 -3.4143 39 1 2.6879 -0.1697 -4.2934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594353985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:50 Heat of formation + Delta-G solvation = -85.636570 kcal Electronic energy + Delta-G solvation = -20835.287433 eV Core-core repulsion = 17584.018451 eV Total energy + Delta-G solvation = -3251.268982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15556 -40.28078 -38.50123 -36.65011 -34.85122 -34.68792 -33.95146 -31.87334 -29.50076 -27.76857 -26.67838 -23.37245 -22.94486 -21.75033 -21.30711 -20.92709 -19.29070 -18.42156 -18.03927 -17.64537 -16.71285 -16.60077 -16.43520 -16.07864 -15.71041 -15.45704 -15.14217 -14.77479 -14.38525 -13.87304 -13.74188 -13.48291 -13.32792 -12.94109 -12.82196 -12.76916 -12.70307 -12.37179 -12.04440 -11.91471 -11.46876 -11.37718 -10.85818 -10.80110 -10.66411 -10.43970 -10.02718 -9.88960 -9.74000 -8.07791 -6.21438 1.45120 1.48118 1.53838 1.84967 2.05133 2.31428 2.41762 2.47648 3.20733 3.49992 3.67608 3.77330 3.98392 4.26626 4.31008 4.52609 4.56549 4.66001 4.69697 4.76431 4.77529 4.89542 5.00039 5.07758 5.12362 5.27522 5.38574 5.59962 5.61876 5.66379 5.73586 5.80484 5.93514 6.08324 6.38342 6.84384 6.89752 7.14476 7.48241 7.51851 7.73078 8.99697 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.004580 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.771504 B = 6112.608871 C = 6538.729434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.173 3.827 3 H 0.055 0.945 4 C -0.136 4.136 5 C 0.494 3.506 6 O -0.592 6.592 7 N -0.700 5.700 8 C 0.182 3.818 9 C 0.007 3.993 10 C -0.502 4.502 11 H 0.068 0.932 12 C 0.025 3.975 13 N -0.911 5.911 14 Si 0.951 3.049 15 H -0.266 1.266 16 H -0.295 1.295 17 H -0.272 1.272 18 C -0.175 4.175 19 C -0.165 4.165 20 N -0.722 5.722 21 C 0.702 3.298 22 N -0.854 5.854 23 O -0.650 6.650 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.411 0.589 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.411 0.589 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 0.279 -2.936 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.176 4.176 5 C 0.282 3.718 6 O -0.473 6.473 7 N -0.350 5.350 8 C 0.057 3.943 9 C 0.006 3.994 10 C -0.540 4.540 11 H 0.086 0.914 12 C -0.176 4.176 13 N -0.548 5.548 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.221 1.221 17 H -0.197 1.197 18 C -0.212 4.212 19 C -0.203 4.203 20 N -0.377 5.377 21 C 0.400 3.600 22 N -0.422 5.422 23 O -0.533 6.533 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.247 0.753 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.241 0.759 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.988 1.593 -3.447 14.494 hybrid contribution 0.953 -1.693 -0.226 1.956 sum -13.035 -0.101 -3.673 13.543 Atomic orbital electron populations 1.22114 0.92693 1.03483 1.02702 1.20545 0.94611 0.95965 0.82195 0.92688 1.22077 0.89395 1.05563 1.00539 1.21428 0.91634 0.77993 0.80730 1.90706 1.71718 1.44715 1.40187 1.45876 1.07398 1.55230 1.26455 1.20451 0.80041 0.95775 0.98005 1.19095 0.98105 0.93398 0.88794 1.20631 1.07540 0.89240 1.36568 0.91427 1.25717 0.94579 1.02532 0.94774 1.70113 1.17370 1.36014 1.31329 0.85734 0.77634 0.80669 0.78279 1.19091 1.22120 1.19733 1.23003 1.00347 1.00231 0.97611 1.22428 0.91319 1.01087 1.05454 1.44943 1.70572 1.13725 1.08448 1.16178 0.77687 0.84423 0.81757 1.42785 1.72491 1.15566 1.11362 1.90882 1.60086 1.16602 1.85707 0.89425 0.90216 0.93957 0.84158 0.85274 0.75262 0.95507 0.95505 0.93302 0.89427 0.89410 0.91916 0.91569 0.76069 0.75922 0.74990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.48 71.98 0.68 -1.98 16 2 C 0.17 4.15 2.13 44.99 0.10 4.25 16 3 H 0.05 1.79 7.39 -2.39 -0.02 1.77 16 4 C -0.14 -2.72 5.24 29.85 0.16 -2.56 16 5 C 0.49 16.21 7.69 87.66 0.67 16.89 16 6 O -0.59 -25.39 15.35 -3.02 -0.05 -25.44 16 7 N -0.70 -24.26 5.48 -463.05 -2.54 -26.80 16 8 C 0.18 8.07 5.50 86.38 0.48 8.55 16 9 C 0.01 0.31 1.38 -52.93 -0.07 0.23 16 10 C -0.50 -24.40 8.63 25.60 0.22 -24.18 16 11 H 0.07 3.11 7.82 -2.91 -0.02 3.09 16 12 C 0.02 1.25 5.39 84.66 0.46 1.71 16 13 N -0.91 -50.43 12.91 21.45 0.28 -50.15 16 14 Si 0.95 40.35 29.55 68.60 2.03 42.38 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 16 H -0.30 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 C -0.17 -6.72 9.96 30.62 0.30 -6.41 16 19 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 20 N -0.72 -18.10 4.22 -457.81 -1.93 -20.03 16 21 C 0.70 20.98 8.80 179.06 1.58 22.56 16 22 N -0.85 -17.55 8.88 -184.74 -1.64 -19.19 16 23 O -0.65 -25.57 16.84 -4.01 -0.07 -25.63 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.14 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.41 12.21 8.36 -92.71 -0.78 11.44 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 32 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 33 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.40 8.22 8.62 -92.71 -0.80 7.42 16 38 H 0.41 5.93 8.84 -92.71 -0.82 5.11 16 39 H 0.42 7.57 8.93 -92.71 -0.83 6.74 16 Total: -1.00 -74.25 335.97 -1.19 -75.44 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -2.13 Total: 37.50 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 4.86 Total: 11.93 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.83 Total: -116.17 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.11 Total: -51.07 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -74.25 -1.19 -75.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594353985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.195 kcal (2) G-P(sol) polarization free energy of solvation -74.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds