Wall clock time and date at job start Mon Mar 30 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 117.00031 * 2 1 4 4 O 1.20825 * 119.99749 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00129 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.84913 * 48.80577 * 5 3 2 7 7 C 1.53778 * 113.61531 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.08544 * 139.98083 * 7 5 3 9 9 H 1.08996 * 113.61586 * 89.19890 * 8 7 5 10 10 N 1.46499 * 113.61341 * 220.02071 * 8 7 5 11 11 C 1.34776 * 119.99769 * 203.46733 * 10 8 7 12 12 O 1.21287 * 120.00119 * 359.97438 * 11 10 8 13 13 C 1.50694 * 120.00258 * 180.02562 * 11 10 8 14 14 C 1.52995 * 109.47591 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47600 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47460 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.53789 * 87.17161 * 334.60751 * 8 7 5 25 25 H 1.09002 * 109.47276 * 59.99534 * 1 2 3 26 26 H 1.08992 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47079 * 300.00008 * 1 2 3 28 28 H 1.09002 * 113.61320 * 25.42876 * 7 5 3 29 29 H 1.08996 * 113.69020 * 254.53972 * 7 5 3 30 30 H 0.96994 * 120.00523 * 23.47242 * 10 8 7 31 31 H 1.09002 * 109.47602 * 59.99559 * 13 11 10 32 32 H 1.09006 * 109.46856 * 299.99707 * 13 11 10 33 33 H 1.09003 * 109.47604 * 59.99355 * 14 13 11 34 34 H 1.08999 * 109.47292 * 299.99720 * 14 13 11 35 35 H 1.09005 * 109.46800 * 60.00280 * 15 14 13 36 36 H 1.08998 * 109.47382 * 300.00079 * 15 14 13 37 37 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 38 38 H 1.09000 * 113.61512 * 139.93301 * 24 8 7 39 39 H 1.08997 * 113.61562 * 270.84772 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1078 2.7143 0.0001 8 6 5.1815 2.2263 0.9870 9 1 6.0817 1.8494 0.5015 10 7 5.4709 3.1819 2.0590 11 6 6.6576 3.1403 2.6966 12 8 7.4857 2.3114 2.3831 13 6 6.9552 4.1228 3.7997 14 6 8.3582 3.8613 4.3509 15 6 8.6606 4.8593 5.4705 16 6 10.0423 4.6013 6.0139 17 1 10.6445 3.8048 5.6022 18 6 10.5375 5.3813 7.0373 19 7 9.8040 6.3508 7.5390 20 14 12.2499 5.0610 7.7114 21 1 12.1680 4.0855 8.8279 22 1 13.1106 4.5094 6.6342 23 1 12.8326 6.3336 8.2076 24 6 4.1938 1.1212 1.3970 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4174 3.4402 0.4297 29 1 4.5106 3.0311 -0.9618 30 1 4.8086 3.8445 2.3100 31 1 6.2229 4.0052 4.5985 32 1 6.9034 5.1379 3.4059 33 1 9.0904 3.9792 3.5521 34 1 8.4106 2.8463 4.7447 35 1 7.9286 4.7416 6.2696 36 1 8.6085 5.8742 5.0765 37 1 10.1522 6.8993 8.2593 38 1 4.6658 0.1524 1.5604 39 1 3.5270 1.4108 2.2091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594371180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:38 Heat of formation + Delta-G solvation = -124.361168 kcal Electronic energy + Delta-G solvation = -19666.556522 eV Core-core repulsion = 16381.315564 eV Total energy + Delta-G solvation = -3285.240958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22289 -39.78447 -38.23825 -36.66680 -34.16783 -33.42652 -31.96090 -28.89002 -27.92959 -26.14336 -26.03103 -23.82399 -21.77936 -20.64497 -20.15527 -19.54476 -18.20831 -17.23760 -16.86803 -16.72115 -16.11205 -15.53592 -15.47021 -15.22097 -14.40815 -13.99328 -13.83925 -13.38925 -13.32795 -12.89576 -12.71123 -12.36648 -12.25469 -11.98391 -11.63806 -11.57802 -11.33584 -11.20447 -11.05501 -10.79191 -10.67861 -10.58433 -10.51973 -9.68617 -9.66003 -9.24966 -9.04499 -8.99818 -8.30559 -5.96243 -3.97543 1.78878 2.29865 2.87708 3.31205 3.35884 3.41645 3.46570 3.93423 4.02888 4.42079 4.43711 4.50660 4.62983 4.70589 4.77965 5.05614 5.12022 5.26625 5.29920 5.34719 5.39804 5.51328 5.57712 5.72604 5.73606 5.90970 5.98333 6.28426 6.48170 6.74511 6.94958 7.18094 7.35469 7.58520 7.72796 7.85567 8.04604 8.43646 8.48746 9.09621 9.66292 11.15258 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.053781 B = 0.002482 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.508550 B =11278.273211 C =11383.697710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.506 6.506 5 C -0.110 4.110 6 H 0.130 0.870 7 C -0.126 4.126 8 C 0.127 3.873 9 H 0.121 0.879 10 N -0.730 5.730 11 C 0.515 3.485 12 O -0.537 6.537 13 C -0.140 4.140 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.287 1.287 24 C -0.134 4.134 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.402 0.598 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 -10.464 -16.582 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.393 6.393 5 C -0.130 4.130 6 H 0.147 0.853 7 C -0.165 4.165 8 C 0.021 3.979 9 H 0.138 0.862 10 N -0.382 5.382 11 C 0.303 3.697 12 O -0.412 6.412 13 C -0.180 4.180 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.173 4.173 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.236 0.764 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.479 -10.626 -16.666 27.058 hybrid contribution 0.173 0.232 0.515 0.590 sum -18.307 -10.394 -16.151 26.534 Atomic orbital electron populations 1.23290 0.76299 1.03797 1.02599 1.86532 1.23465 1.33494 1.83905 1.23581 0.91690 0.81283 0.71851 1.90670 1.67013 1.36433 1.45224 1.22384 0.87237 1.01248 1.02100 0.85251 1.23371 0.97444 0.94586 1.01050 1.22304 0.97304 0.89779 0.88512 0.86151 1.46095 1.18383 1.36278 1.37450 1.21323 0.80528 0.85046 0.82809 1.90672 1.46580 1.38373 1.65624 1.21860 1.02162 0.98065 0.95870 1.21443 0.91466 1.01026 0.99362 1.19135 0.96587 0.93701 0.92307 1.21274 1.00664 1.15952 1.17674 0.92576 1.25029 0.97616 0.95196 0.96752 1.69967 1.37055 1.19981 1.26745 0.86586 0.84639 0.77503 0.79250 1.20690 1.19840 1.21283 1.23507 0.98175 1.01516 0.94142 0.91874 0.88013 0.91823 0.87995 0.89534 0.76383 0.89327 0.89288 0.92698 0.92710 0.96628 0.96592 0.93086 0.89335 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.09 10.57 -39.28 -0.41 -3.50 16 3 C 0.47 4.44 7.49 36.00 0.27 4.71 16 4 O -0.51 -6.02 15.65 -18.75 -0.29 -6.32 16 5 C -0.11 -0.82 4.26 -90.87 -0.39 -1.20 16 6 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 7 C -0.13 -0.97 7.15 -25.92 -0.19 -1.16 16 8 C 0.13 1.21 4.21 -67.11 -0.28 0.93 16 9 H 0.12 1.28 7.50 -51.93 -0.39 0.89 16 10 N -0.73 -8.11 5.36 -53.02 -0.28 -8.39 16 11 C 0.51 7.96 7.83 -10.99 -0.09 7.88 16 12 O -0.54 -10.36 15.60 5.55 0.09 -10.27 16 13 C -0.14 -2.27 5.70 -27.89 -0.16 -2.43 16 14 C -0.09 -2.04 4.44 -26.73 -0.12 -2.16 16 15 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.13 -1.13 7.44 -25.82 -0.19 -1.32 16 25 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.10 0.85 7.40 -51.93 -0.38 0.46 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.40 3.49 8.71 -40.82 -0.36 3.13 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -35.05 335.32 -6.92 -41.98 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.16 Total: -2.22 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.62 Total: -6.94 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.45 Total: -34.85 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.62 Total: -20.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.05 -6.92 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594371180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.386 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds