Wall clock time and date at job start Mon Mar 30 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 117.00031 * 2 1 4 4 O 1.20825 * 119.99749 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00129 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.84913 * 48.80577 * 5 3 2 7 7 C 1.53778 * 113.61531 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.08544 * 139.98083 * 7 5 3 9 9 H 1.08996 * 113.61586 * 89.19890 * 8 7 5 10 10 N 1.46499 * 113.61341 * 220.02071 * 8 7 5 11 11 C 1.34776 * 119.99769 * 203.46733 * 10 8 7 12 12 O 1.21287 * 120.00119 * 359.97438 * 11 10 8 13 13 C 1.50694 * 120.00258 * 180.02562 * 11 10 8 14 14 C 1.52995 * 109.47591 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47600 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47460 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.53789 * 87.17161 * 334.60751 * 8 7 5 25 25 H 1.09002 * 109.47276 * 59.99534 * 1 2 3 26 26 H 1.08992 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47079 * 300.00008 * 1 2 3 28 28 H 1.09002 * 113.61320 * 25.42876 * 7 5 3 29 29 H 1.08996 * 113.69020 * 254.53972 * 7 5 3 30 30 H 0.96994 * 120.00523 * 23.47242 * 10 8 7 31 31 H 1.09002 * 109.47602 * 59.99559 * 13 11 10 32 32 H 1.09006 * 109.46856 * 299.99707 * 13 11 10 33 33 H 1.09003 * 109.47604 * 59.99355 * 14 13 11 34 34 H 1.08999 * 109.47292 * 299.99720 * 14 13 11 35 35 H 1.09005 * 109.46800 * 60.00280 * 15 14 13 36 36 H 1.08998 * 109.47382 * 300.00079 * 15 14 13 37 37 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 38 38 H 1.09000 * 113.61512 * 139.93301 * 24 8 7 39 39 H 1.08997 * 113.61562 * 270.84772 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1078 2.7143 0.0001 8 6 5.1815 2.2263 0.9870 9 1 6.0817 1.8494 0.5015 10 7 5.4709 3.1819 2.0590 11 6 6.6576 3.1403 2.6966 12 8 7.4857 2.3114 2.3831 13 6 6.9552 4.1228 3.7997 14 6 8.3582 3.8613 4.3509 15 6 8.6606 4.8593 5.4705 16 6 10.0423 4.6013 6.0139 17 1 10.6445 3.8048 5.6022 18 6 10.5375 5.3813 7.0373 19 7 9.8040 6.3508 7.5390 20 14 12.2499 5.0610 7.7114 21 1 12.1680 4.0855 8.8279 22 1 13.1106 4.5094 6.6342 23 1 12.8326 6.3336 8.2076 24 6 4.1938 1.1212 1.3970 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4174 3.4402 0.4297 29 1 4.5106 3.0311 -0.9618 30 1 4.8086 3.8445 2.3100 31 1 6.2229 4.0052 4.5985 32 1 6.9034 5.1379 3.4059 33 1 9.0904 3.9792 3.5521 34 1 8.4106 2.8463 4.7447 35 1 7.9286 4.7416 6.2696 36 1 8.6085 5.8742 5.0765 37 1 10.1522 6.8993 8.2593 38 1 4.6658 0.1524 1.5604 39 1 3.5270 1.4108 2.2091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594371180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:37 Heat of formation + Delta-G solvation = -147.421462 kcal Electronic energy + Delta-G solvation = -19667.556491 eV Core-core repulsion = 16381.315564 eV Total energy + Delta-G solvation = -3286.240927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95054 -40.81309 -39.15296 -37.41071 -36.09460 -34.50521 -33.91755 -30.00111 -29.17269 -26.96938 -26.79252 -25.55651 -22.87576 -21.94245 -21.35470 -20.52558 -18.93181 -18.55789 -17.97713 -17.72502 -17.41103 -16.71391 -16.49000 -16.35492 -16.11371 -15.06210 -14.96307 -14.41240 -14.30904 -14.16097 -13.77872 -13.60150 -13.48989 -13.09634 -12.94949 -12.60475 -12.54785 -12.49372 -12.32499 -12.28588 -11.82591 -11.76031 -11.53035 -11.45381 -11.39007 -11.24929 -10.69669 -10.53466 -10.03019 -8.19399 -6.29248 1.07794 1.40315 1.41487 1.53027 1.66357 1.69275 2.31201 2.43428 3.13532 3.28232 3.36145 3.72142 3.79300 3.92467 4.07024 4.25949 4.29212 4.30234 4.31356 4.54260 4.62442 4.67574 4.70403 4.83386 4.87153 4.95320 5.00008 5.13532 5.16387 5.22638 5.34364 5.54146 5.59277 5.77302 5.88492 6.28640 6.58083 6.67391 6.86549 7.30002 7.39368 8.92101 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.053781 B = 0.002482 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.508550 B =11278.273211 C =11383.697710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.101 4.101 6 H 0.154 0.846 7 C -0.116 4.116 8 C 0.118 3.882 9 H 0.112 0.888 10 N -0.711 5.711 11 C 0.519 3.481 12 O -0.581 6.581 13 C -0.133 4.133 14 C -0.082 4.082 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.279 1.279 24 C -0.131 4.131 25 H 0.063 0.937 26 H 0.129 0.871 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.416 0.584 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.000 1.000 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 -11.126 -17.291 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.425 6.425 5 C -0.121 4.121 6 H 0.171 0.829 7 C -0.154 4.154 8 C 0.013 3.987 9 H 0.130 0.870 10 N -0.362 5.362 11 C 0.307 3.693 12 O -0.460 6.460 13 C -0.173 4.173 14 C -0.120 4.120 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.192 1.192 23 H -0.204 1.204 24 C -0.170 4.170 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.253 0.747 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.029 -11.290 -17.393 28.144 hybrid contribution 0.233 0.425 0.723 0.870 sum -18.796 -10.865 -16.670 27.372 Atomic orbital electron populations 1.23544 0.74974 1.05656 1.02487 1.86526 1.24868 1.33062 1.83495 1.23890 0.92295 0.81055 0.70930 1.90659 1.67788 1.37344 1.46726 1.22431 0.86148 1.01449 1.02023 0.82855 1.23304 0.96308 0.94766 1.01037 1.22464 0.97634 0.90135 0.88497 0.87045 1.45904 1.17086 1.36427 1.36834 1.21023 0.81299 0.84241 0.82688 1.90661 1.48257 1.40066 1.67015 1.21695 0.99174 0.99463 0.96949 1.21155 0.94637 0.98797 0.97454 1.19031 0.95100 0.94004 0.93114 1.21701 1.02162 1.16174 1.18401 0.92982 1.25931 1.01981 0.94820 0.96950 1.70072 1.38995 1.20724 1.27219 0.85485 0.79360 0.77771 0.78675 1.19717 1.19210 1.20381 1.23456 0.97677 1.01098 0.94757 0.91786 0.85248 0.92182 0.88380 0.88061 0.74718 0.87533 0.87439 0.94015 0.94037 0.98169 0.98109 0.92698 0.89090 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.67 10.57 -51.49 -0.54 -6.21 16 3 C 0.47 8.16 7.49 71.24 0.53 8.69 16 4 O -0.54 -12.15 15.65 21.97 0.34 -11.81 16 5 C -0.10 -1.29 4.26 -10.95 -0.05 -1.33 16 6 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.12 -1.54 7.15 31.12 0.22 -1.32 16 8 C 0.12 2.06 4.21 45.52 0.19 2.25 16 9 H 0.11 2.24 7.50 -2.39 -0.02 2.22 16 10 N -0.71 -14.66 5.36 -440.03 -2.36 -17.02 16 11 C 0.52 15.63 7.83 87.66 0.69 16.31 16 12 O -0.58 -22.38 15.60 -3.05 -0.05 -22.43 16 13 C -0.13 -4.22 5.70 29.84 0.17 -4.05 16 14 C -0.08 -3.59 4.44 30.59 0.14 -3.46 16 15 C 0.02 1.31 4.97 29.85 0.15 1.45 16 16 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 17 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 20 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.13 -1.98 7.44 31.19 0.23 -1.75 16 25 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 26 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.10 1.44 7.40 -2.39 -0.02 1.42 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.42 6.34 8.71 -92.71 -0.81 5.53 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.99 16 32 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 33 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -75.89 335.32 4.10 -71.78 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.23 Total: 7.96 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.17 Total: -13.19 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -2.07 Total: -73.43 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.25 Total: -40.45 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.89 4.10 -71.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594371180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.639 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds