Wall clock time and date at job start Mon Mar 30 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46914 * 2 1 4 4 H 1.09006 * 109.47091 * 54.50293 * 3 2 1 5 5 C 1.50697 * 109.47283 * 174.49962 * 3 2 1 6 6 H 1.08000 * 119.99771 * 119.99801 * 5 3 2 7 7 C 1.37875 * 120.00577 * 300.00513 * 5 3 2 8 8 N 1.31524 * 119.99494 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00503 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46979 * 89.99953 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.46718 * 329.99923 * 9 7 5 13 13 N 1.46893 * 109.47259 * 294.50304 * 3 2 1 14 14 C 1.46906 * 110.99964 * 154.42207 * 13 3 2 15 15 C 1.53006 * 109.46891 * 174.79253 * 14 13 3 16 16 N 1.46496 * 109.46791 * 180.02562 * 15 14 13 17 17 C 1.34766 * 124.18091 * 90.02467 * 16 15 14 18 18 O 1.21241 * 127.15328 * 359.92207 * 17 16 15 19 19 C 1.51585 * 105.68995 * 179.97438 * 17 16 15 20 20 N 1.47314 * 103.58745 * 359.97438 * 19 17 16 21 21 C 1.46507 * 126.68616 * 180.02562 * 20 19 17 22 22 C 1.33790 * 124.17688 * 269.72096 * 16 15 14 23 23 O 1.21535 * 123.77435 * 0.03871 * 22 16 15 24 24 H 1.09006 * 109.46805 * 186.00442 * 1 2 3 25 25 H 1.09001 * 109.46883 * 306.00164 * 1 2 3 26 26 H 1.08992 * 109.47091 * 66.00660 * 1 2 3 27 27 H 1.09002 * 109.47270 * 240.00262 * 2 1 3 28 28 H 1.09004 * 109.47667 * 119.99849 * 2 1 3 29 29 H 0.96997 * 119.99428 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99980 * 30.47077 * 13 3 2 31 31 H 1.08996 * 109.47029 * 294.78474 * 14 13 3 32 32 H 1.08989 * 109.46984 * 54.79165 * 14 13 3 33 33 H 1.09003 * 109.47013 * 300.00030 * 15 14 13 34 34 H 1.08995 * 109.47206 * 59.99743 * 15 14 13 35 35 H 1.08999 * 110.60212 * 118.52157 * 19 17 16 36 36 H 1.09002 * 110.59751 * 241.47462 * 19 17 16 37 37 H 1.08999 * 109.46813 * 89.99775 * 21 20 19 38 38 H 1.08998 * 109.46933 * 209.99990 * 21 20 19 39 39 H 1.08996 * 109.47077 * 329.99531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 0.8367 5 6 3.5408 1.4448 0.1362 6 1 4.1524 1.8872 -0.6363 7 6 4.1332 0.8821 1.2468 8 7 3.3883 0.3438 2.1876 9 14 5.9935 0.8843 1.4152 10 1 6.4255 2.1193 2.1178 11 1 6.4214 -0.3045 2.1956 12 1 6.6127 0.8400 0.0661 13 7 1.6616 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3008 4.2068 -2.4477 16 7 1.2081 5.6591 -2.2791 17 6 2.2578 6.4999 -2.3651 18 8 3.4135 6.2080 -2.5869 19 6 1.6934 7.8862 -2.1256 20 7 0.2562 7.6427 -1.9130 21 6 -0.7709 8.6504 -1.6372 22 6 0.0698 6.3152 -2.0264 23 8 -1.0112 5.7724 -1.9091 24 1 -0.3633 -1.0221 0.1075 25 1 -0.3633 0.6041 0.8314 26 1 -0.3633 0.4178 -0.9388 27 1 1.8934 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 3.8051 -0.0524 2.9687 30 1 0.7977 1.7170 -1.6185 31 1 0.7522 3.7866 -0.4074 32 1 2.5047 3.9312 -0.6827 33 1 2.1167 3.9721 -3.1315 34 1 0.3641 3.8275 -2.8561 35 1 2.1419 8.3350 -1.2393 36 1 1.8497 8.5199 -2.9986 37 1 -1.1926 9.0061 -2.5773 38 1 -1.5600 8.2080 -1.0293 39 1 -0.3241 9.4869 -1.0999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:00 Heat of formation + Delta-G solvation = -36.396983 kcal Electronic energy + Delta-G solvation = -21020.490775 eV Core-core repulsion = 17771.356981 eV Total energy + Delta-G solvation = -3249.133793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30855 -38.59274 -36.75235 -36.18536 -35.25942 -32.67057 -31.40308 -29.74669 -27.78538 -26.61516 -25.78924 -23.08776 -22.45238 -21.81139 -20.15264 -19.47303 -17.48586 -17.19545 -16.70211 -16.27894 -15.53119 -15.09974 -14.84821 -14.64627 -14.48799 -14.17108 -14.02047 -13.70955 -13.27825 -12.86512 -12.75872 -12.69454 -12.19215 -11.89335 -11.74980 -11.17484 -10.89697 -10.81321 -10.74633 -10.60810 -10.22155 -9.98380 -9.93133 -9.62961 -9.44181 -9.16835 -9.05555 -8.31979 -7.28020 -5.93988 -3.97934 1.61484 2.01854 2.86177 2.99145 3.35486 3.41613 3.47607 3.92164 4.48174 4.50943 4.76333 4.89100 5.13078 5.15390 5.20663 5.35776 5.36543 5.51478 5.70206 5.74761 5.89180 6.17072 6.19692 6.20988 6.33781 6.44385 6.57707 6.87595 7.07949 7.10486 7.19554 7.36214 7.48646 7.79504 7.93920 8.02549 8.26378 8.40393 8.74531 9.10027 9.66933 11.11545 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004949 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.513728 B = 5656.312979 C = 6531.633754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.057 3.943 15 C 0.121 3.879 16 N -0.572 5.572 17 C 0.519 3.481 18 O -0.461 6.461 19 C 0.064 3.936 20 N -0.635 5.635 21 C 0.123 3.877 22 C 0.699 3.301 23 O -0.541 6.541 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.259 0.741 30 H 0.319 0.681 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 16.003 -7.970 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.313 5.313 14 C -0.074 4.074 15 C 0.000 4.000 16 N -0.318 5.318 17 C 0.305 3.695 18 O -0.330 6.330 19 C -0.063 4.063 20 N -0.375 5.375 21 C -0.018 4.018 22 C 0.401 3.599 23 O -0.415 6.415 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.440 15.478 -8.065 18.603 hybrid contribution 0.163 0.112 0.765 0.790 sum -6.277 15.590 -7.300 18.323 Atomic orbital electron populations 1.21885 0.99525 0.99762 0.99626 1.21766 0.91272 1.00132 1.03181 1.19167 0.95573 0.90021 0.83937 0.98043 1.21219 0.91170 1.36438 1.04371 0.91966 1.24959 0.98165 0.95614 0.95818 1.69882 1.34699 1.39535 1.09585 0.86538 0.85745 0.77282 0.78096 1.20920 1.21366 1.19816 1.60615 1.36156 1.01001 1.33564 1.22054 1.00889 0.91038 0.93454 1.21802 1.04214 0.73622 1.00365 1.46435 1.09135 1.10519 1.65692 1.20832 0.85292 0.87774 0.75597 1.90862 1.16015 1.81674 1.44422 1.22509 0.81500 0.96722 1.05522 1.47485 1.08482 1.06272 1.75275 1.21478 0.89572 0.89403 1.01397 1.15907 0.84082 0.82019 0.77921 1.90975 1.24927 1.70459 1.55096 0.94318 0.93910 0.94539 0.93906 0.88168 0.93108 0.86425 0.96091 0.90354 0.87986 0.89244 0.86107 0.86266 0.92169 0.89997 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.64 37.16 0.36 -2.63 16 2 C -0.12 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.60 2.02 -68.87 -0.14 5.46 16 4 H 0.00 0.05 7.85 -51.93 -0.41 -0.35 16 5 C -0.49 -13.89 8.57 -34.44 -0.30 -14.19 16 6 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.05 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.89 11.29 55.43 0.63 -25.27 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.73 6.27 -107.95 -0.68 -15.41 16 14 C 0.06 1.12 5.78 -3.82 -0.02 1.10 16 15 C 0.12 1.94 6.01 -4.04 -0.02 1.92 16 16 N -0.57 -8.33 2.60 -120.73 -0.31 -8.64 16 17 C 0.52 6.83 8.32 -10.55 -0.09 6.74 16 18 O -0.46 -7.60 17.76 5.59 0.10 -7.50 16 19 C 0.06 0.51 7.66 -4.31 -0.03 0.48 16 20 N -0.63 -6.27 3.42 -187.94 -0.64 -6.91 16 21 C 0.12 0.78 11.17 59.85 0.67 1.45 16 22 C 0.70 9.95 8.31 -88.02 -0.73 9.21 16 23 O -0.54 -9.47 17.15 5.33 0.09 -9.37 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.65 6.66 -51.93 -0.35 0.30 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.32 6.26 6.64 -39.29 -0.26 6.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.73 7.94 -51.94 -0.41 1.32 16 33 H 0.10 1.64 8.00 -51.93 -0.42 1.23 16 34 H 0.09 1.36 7.86 -51.93 -0.41 0.96 16 35 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -33.61 327.65 -7.35 -40.96 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.90 Total: 2.43 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.54 Total: 7.85 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.01 Total: -56.23 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.19 Total: -16.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.61 -7.35 -40.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.565 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds