Wall clock time and date at job start Mon Mar 30 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46914 * 2 1 4 4 H 1.09006 * 109.47091 * 54.50293 * 3 2 1 5 5 C 1.50697 * 109.47283 * 174.49962 * 3 2 1 6 6 H 1.08000 * 119.99771 * 119.99801 * 5 3 2 7 7 C 1.37875 * 120.00577 * 300.00513 * 5 3 2 8 8 N 1.31524 * 119.99494 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00503 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46979 * 89.99953 * 9 7 5 11 11 H 1.48505 * 109.47258 * 209.99986 * 9 7 5 12 12 H 1.48503 * 109.46718 * 329.99923 * 9 7 5 13 13 N 1.46893 * 109.47259 * 294.50304 * 3 2 1 14 14 C 1.46906 * 110.99964 * 154.42207 * 13 3 2 15 15 C 1.53006 * 109.46891 * 174.79253 * 14 13 3 16 16 N 1.46496 * 109.46791 * 180.02562 * 15 14 13 17 17 C 1.34766 * 124.18091 * 90.02467 * 16 15 14 18 18 O 1.21241 * 127.15328 * 359.92207 * 17 16 15 19 19 C 1.51585 * 105.68995 * 179.97438 * 17 16 15 20 20 N 1.47314 * 103.58745 * 359.97438 * 19 17 16 21 21 C 1.46507 * 126.68616 * 180.02562 * 20 19 17 22 22 C 1.33790 * 124.17688 * 269.72096 * 16 15 14 23 23 O 1.21535 * 123.77435 * 0.03871 * 22 16 15 24 24 H 1.09006 * 109.46805 * 186.00442 * 1 2 3 25 25 H 1.09001 * 109.46883 * 306.00164 * 1 2 3 26 26 H 1.08992 * 109.47091 * 66.00660 * 1 2 3 27 27 H 1.09002 * 109.47270 * 240.00262 * 2 1 3 28 28 H 1.09004 * 109.47667 * 119.99849 * 2 1 3 29 29 H 0.96997 * 119.99428 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99980 * 30.47077 * 13 3 2 31 31 H 1.08996 * 109.47029 * 294.78474 * 14 13 3 32 32 H 1.08989 * 109.46984 * 54.79165 * 14 13 3 33 33 H 1.09003 * 109.47013 * 300.00030 * 15 14 13 34 34 H 1.08995 * 109.47206 * 59.99743 * 15 14 13 35 35 H 1.08999 * 110.60212 * 118.52157 * 19 17 16 36 36 H 1.09002 * 110.59751 * 241.47462 * 19 17 16 37 37 H 1.08999 * 109.46813 * 89.99775 * 21 20 19 38 38 H 1.08998 * 109.46933 * 209.99990 * 21 20 19 39 39 H 1.08996 * 109.47077 * 329.99531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9840 0.8367 5 6 3.5408 1.4448 0.1362 6 1 4.1524 1.8872 -0.6363 7 6 4.1332 0.8821 1.2468 8 7 3.3883 0.3438 2.1876 9 14 5.9935 0.8843 1.4152 10 1 6.4255 2.1193 2.1178 11 1 6.4214 -0.3045 2.1956 12 1 6.6127 0.8400 0.0661 13 7 1.6616 2.0957 -1.2602 14 6 1.5681 3.5520 -1.0910 15 6 1.3008 4.2068 -2.4477 16 7 1.2081 5.6591 -2.2791 17 6 2.2578 6.4999 -2.3651 18 8 3.4135 6.2080 -2.5869 19 6 1.6934 7.8862 -2.1256 20 7 0.2562 7.6427 -1.9130 21 6 -0.7709 8.6504 -1.6372 22 6 0.0698 6.3152 -2.0264 23 8 -1.0112 5.7724 -1.9091 24 1 -0.3633 -1.0221 0.1075 25 1 -0.3633 0.6041 0.8314 26 1 -0.3633 0.4178 -0.9388 27 1 1.8934 -0.5138 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 3.8051 -0.0524 2.9687 30 1 0.7977 1.7170 -1.6185 31 1 0.7522 3.7866 -0.4074 32 1 2.5047 3.9312 -0.6827 33 1 2.1167 3.9721 -3.1315 34 1 0.3641 3.8275 -2.8561 35 1 2.1419 8.3350 -1.2393 36 1 1.8497 8.5199 -2.9986 37 1 -1.1926 9.0061 -2.5773 38 1 -1.5600 8.2080 -1.0293 39 1 -0.3241 9.4869 -1.0999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:00 Heat of formation + Delta-G solvation = -61.025715 kcal Electronic energy + Delta-G solvation = -21021.558757 eV Core-core repulsion = 17771.356981 eV Total energy + Delta-G solvation = -3250.201775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.33732 -39.71146 -38.47699 -37.27829 -36.53801 -34.51746 -33.18920 -30.86389 -29.17009 -27.95816 -27.11070 -24.86053 -23.63756 -23.24422 -21.63419 -21.02676 -18.61256 -18.35551 -18.19447 -17.74517 -16.86399 -16.61632 -16.35665 -15.97799 -15.70504 -15.48130 -15.10867 -15.00670 -14.73894 -14.61021 -13.89899 -13.54357 -13.47204 -13.38852 -13.23092 -13.09108 -12.74347 -12.58891 -12.36352 -12.04714 -11.98842 -11.70316 -11.53367 -11.31882 -11.08096 -10.86376 -10.46291 -9.96891 -9.16827 -8.10076 -6.22263 0.59770 1.04915 1.39423 1.40227 1.51996 1.89101 2.04089 2.42186 3.02670 3.15012 3.54326 3.68973 3.99050 4.10741 4.25576 4.34947 4.38050 4.45718 4.46682 4.54488 4.65030 4.68241 4.69691 4.90509 4.92856 5.04108 5.05796 5.20390 5.32479 5.41073 5.54544 5.70742 5.84663 6.07726 6.27901 6.34158 6.39491 6.87629 6.90392 6.97928 7.46457 8.93642 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004949 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.513728 B = 5656.312979 C = 6531.633754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.515 4.515 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.068 3.932 15 C 0.133 3.867 16 N -0.581 5.581 17 C 0.510 3.490 18 O -0.502 6.502 19 C 0.078 3.922 20 N -0.622 5.622 21 C 0.115 3.885 22 C 0.689 3.311 23 O -0.583 6.583 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 17.924 -8.762 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.117 3.883 4 H -0.017 1.017 5 C -0.553 4.553 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.196 1.196 13 N -0.311 5.311 14 C -0.063 4.063 15 C 0.011 3.989 16 N -0.326 5.326 17 C 0.299 3.701 18 O -0.374 6.374 19 C -0.046 4.046 20 N -0.361 5.361 21 C -0.024 4.024 22 C 0.391 3.609 23 O -0.460 6.460 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.539 17.462 -8.866 20.647 hybrid contribution 0.166 -0.420 1.017 1.113 sum -6.372 17.043 -7.849 19.816 Atomic orbital electron populations 1.21761 0.96270 1.01270 1.00451 1.21587 0.94188 0.98473 1.01575 1.18960 0.94236 0.90912 0.84182 1.01705 1.21440 0.92626 1.36838 1.04429 0.93391 1.25683 1.02461 0.95167 0.95449 1.70005 1.36307 1.39730 1.09856 0.85583 0.80574 0.77563 0.78070 1.20454 1.20405 1.19631 1.60483 1.37089 1.02013 1.31537 1.21899 0.98791 0.90079 0.95486 1.21470 1.04584 0.75171 0.97675 1.46517 1.10247 1.09957 1.65915 1.21744 0.84452 0.89634 0.74223 1.90841 1.17509 1.82725 1.46330 1.22757 0.79720 0.93426 1.08704 1.47735 1.10003 1.04905 1.73429 1.21821 0.88837 0.89122 1.02647 1.16133 0.83230 0.83483 0.78046 1.90939 1.26205 1.71609 1.57247 0.92071 0.94836 0.92307 0.93955 0.91182 0.92947 0.84896 0.97208 0.93327 0.88086 0.88241 0.82904 0.81932 0.90400 0.91519 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.64 71.98 0.69 -4.77 16 2 C -0.12 -5.81 5.36 30.60 0.16 -5.64 16 3 C 0.23 11.84 2.02 44.17 0.09 11.93 16 4 H -0.03 -2.04 7.85 -2.38 -0.02 -2.06 16 5 C -0.51 -29.86 8.57 25.60 0.22 -29.64 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.61 5.29 84.65 0.45 1.06 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.87 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.68 -30.01 6.27 -495.45 -3.11 -33.12 16 14 C 0.07 2.81 5.78 86.30 0.50 3.30 16 15 C 0.13 4.34 6.01 86.38 0.52 4.86 16 16 N -0.58 -16.74 2.60 -773.12 -2.01 -18.75 16 17 C 0.51 12.87 8.32 87.94 0.73 13.60 16 18 O -0.50 -16.51 17.76 -2.91 -0.05 -16.56 16 19 C 0.08 0.97 7.66 85.76 0.66 1.63 16 20 N -0.62 -10.55 3.42 -866.95 -2.96 -13.51 16 21 C 0.11 1.08 11.17 127.77 1.43 2.50 16 22 C 0.69 19.02 8.31 179.44 1.49 20.51 16 23 O -0.58 -20.41 17.15 -3.83 -0.07 -20.48 16 24 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 2.01 6.66 -2.39 -0.02 2.00 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 3.85 5.94 -2.38 -0.01 3.83 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.33 13.03 6.64 -89.69 -0.60 12.44 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 2.26 7.94 -2.39 -0.02 2.24 16 33 H 0.10 3.31 8.00 -2.39 -0.02 3.29 16 34 H 0.10 3.04 7.86 -2.39 -0.02 3.02 16 35 H 0.15 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.87 8.03 -2.39 -0.02 0.86 16 39 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -76.59 327.65 1.46 -75.13 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.45 Total: 14.23 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.94 Total: 19.34 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -7.84 Total: -119.25 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.12 Total: -37.04 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.59 1.46 -75.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.108 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds