Wall clock time and date at job start Mon Mar 30 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 112.84521 * 2 1 4 4 C 1.53778 * 113.61054 * 131.19373 * 2 1 3 5 5 C 1.53784 * 87.07915 * 89.11880 * 4 2 1 6 6 N 1.46495 * 113.61515 * 270.79465 * 5 4 2 7 7 C 1.34772 * 120.00099 * 280.68148 * 6 5 4 8 8 O 1.21588 * 120.00156 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00058 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00312 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47503 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99673 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00102 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99702 * 359.97438 * 14 13 11 16 16 C 1.38952 * 120.00155 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99901 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47014 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46941 * 119.99638 * 18 16 14 21 21 H 1.48495 * 109.47148 * 239.99347 * 18 16 14 22 22 C 1.53781 * 87.17497 * 25.38755 * 5 4 2 23 23 H 1.08998 * 109.47608 * 294.49375 * 1 2 3 24 24 H 1.09001 * 109.46928 * 54.49417 * 1 2 3 25 25 H 1.09001 * 109.47110 * 174.49177 * 1 2 3 26 26 H 1.09004 * 109.46969 * 191.19457 * 3 2 1 27 27 H 1.08997 * 109.47414 * 311.19407 * 3 2 1 28 28 H 1.08998 * 109.46956 * 71.19790 * 3 2 1 29 29 H 1.08990 * 113.62141 * 334.57057 * 4 2 1 30 30 H 1.09001 * 113.61360 * 203.66237 * 4 2 1 31 31 H 1.09002 * 113.61325 * 139.97394 * 5 4 2 32 32 H 0.97003 * 119.99961 * 100.68006 * 6 5 4 33 33 H 0.97003 * 120.00001 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47129 * 300.00742 * 10 9 7 35 35 H 1.09003 * 109.46838 * 59.99967 * 10 9 7 36 36 H 0.97000 * 119.99950 * 0.02562 * 13 11 10 37 37 H 0.97001 * 119.99902 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.61510 * 89.15485 * 22 5 4 39 39 H 1.09002 * 113.61535 * 220.06307 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0929 -2.0425 0.0020 6 7 0.8356 -2.7943 0.0040 7 6 0.6275 -3.7570 0.9239 8 8 1.4835 -4.0019 1.7520 9 7 -0.5295 -4.4483 0.9261 10 6 -0.7555 -5.4952 1.9257 11 6 -2.1144 -6.1099 1.7110 12 8 -2.8242 -5.7130 0.8111 13 7 -2.5407 -7.1014 2.5182 14 6 -3.7769 -7.6611 2.3225 15 1 -4.4092 -7.3071 1.5217 16 6 -4.2167 -8.6830 3.1551 17 7 -3.4474 -9.1133 4.1297 18 14 -5.9007 -9.4459 2.8879 19 1 -6.5642 -8.7889 1.7333 20 1 -5.7484 -10.8971 2.6119 21 1 -6.7282 -9.2580 4.1066 22 6 2.1448 -0.9317 -1.0602 23 1 -0.3634 0.4260 0.9351 24 1 -0.3633 0.5969 -0.8366 25 1 -0.3633 -1.0229 -0.0986 26 1 3.1942 1.3534 -0.1995 27 1 1.6414 2.0076 -0.7733 28 1 1.9599 1.8734 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6486 1.3496 31 1 2.9717 -2.6874 0.0026 32 1 0.1528 -2.5993 -0.6569 33 1 -1.2122 -4.2533 0.2652 34 1 0.0106 -6.2641 1.8262 35 1 -0.7065 -5.0607 2.9242 36 1 -1.9729 -7.4191 3.2376 37 1 -3.7542 -9.8269 4.7107 38 1 3.1575 -0.6532 -1.3516 39 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595865242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:18 Heat of formation + Delta-G solvation = -51.865748 kcal Electronic energy + Delta-G solvation = -20370.402662 eV Core-core repulsion = 17120.598093 eV Total energy + Delta-G solvation = -3249.804569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69071 -39.04423 -37.99504 -34.39218 -33.68557 -33.49428 -31.36671 -30.20524 -27.70391 -27.26885 -25.97935 -24.50727 -22.20230 -20.55360 -19.57471 -18.62683 -18.40740 -17.90777 -16.24743 -15.72204 -15.54019 -15.00309 -14.88993 -14.56854 -14.33909 -14.05846 -13.86903 -13.73860 -13.41530 -12.88283 -12.78950 -12.16737 -12.14198 -11.92540 -11.80078 -11.62425 -11.40131 -11.13713 -11.10096 -10.51409 -10.40421 -10.31990 -10.26890 -9.94625 -9.63790 -9.02352 -8.61274 -8.54469 -8.08968 -6.50579 -3.92517 2.81522 3.10818 3.22977 3.29763 3.42374 3.76489 4.09526 4.23557 4.31330 4.41708 4.61491 4.69985 4.91973 5.00994 5.18302 5.33697 5.38929 5.41447 5.51168 5.61031 5.65336 5.75296 5.82062 5.87739 5.96570 6.01917 6.02861 6.09233 6.11818 6.19353 6.67826 6.78248 7.11807 7.47067 7.93769 8.26805 8.46361 8.84004 9.05776 9.40830 9.88677 10.66463 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047225 B = 0.003091 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.766116 B = 9054.947826 C = 9320.311152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.141 4.141 5 C 0.147 3.853 6 N -0.731 5.731 7 C 0.705 3.295 8 O -0.595 6.595 9 N -0.725 5.725 10 C 0.129 3.871 11 C 0.429 3.571 12 O -0.598 6.598 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.932 3.068 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.136 4.136 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.396 0.604 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.095 0.905 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 15.990 -7.670 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.192 4.192 4 C -0.180 4.180 5 C 0.041 3.959 6 N -0.389 5.389 7 C 0.405 3.595 8 O -0.473 6.473 9 N -0.383 5.383 10 C 0.001 3.999 11 C 0.215 3.785 12 O -0.485 6.485 13 N -0.185 5.185 14 C -0.433 4.433 15 H 0.123 0.877 16 C -0.178 4.178 17 N -0.535 5.535 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.174 4.174 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.243 0.757 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.475 15.829 -7.342 20.352 hybrid contribution -1.107 -0.488 -0.141 1.218 sum 9.368 15.341 -7.483 19.471 Atomic orbital electron populations 1.21741 0.93130 1.02486 1.01861 1.21887 0.95776 0.94449 0.96838 1.21712 1.00294 0.95503 1.01680 1.23439 1.01474 0.95521 0.97521 1.21484 0.86461 0.91318 0.96669 1.44969 1.19878 1.38767 1.35291 1.15844 0.82589 0.79257 0.81821 1.90904 1.44930 1.70626 1.40850 1.44779 1.18132 1.38880 1.36493 1.20771 0.96750 0.90334 0.92092 1.19772 0.88417 0.84393 0.85926 1.90489 1.57770 1.65173 1.35048 1.41797 1.17240 1.30770 1.28668 1.19774 0.92901 1.15421 1.15251 0.87652 1.25327 0.99975 0.97017 0.95453 1.69624 1.37398 1.28659 1.17817 0.85759 0.81194 0.78687 0.78457 1.19146 1.20618 1.20626 1.23426 1.01990 0.95303 0.96635 0.92335 0.92529 0.91763 0.92574 0.92757 0.92583 0.90824 0.89467 0.89634 0.76748 0.75696 0.90046 0.90055 0.77014 0.91649 0.88682 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.04 37.16 0.34 -0.85 16 2 C -0.09 -0.75 1.39 -153.60 -0.21 -0.96 16 3 C -0.13 -0.96 9.20 37.16 0.34 -0.61 16 4 C -0.14 -1.46 7.02 -25.92 -0.18 -1.64 16 5 C 0.15 1.57 3.95 -67.12 -0.27 1.31 16 6 N -0.73 -8.88 4.11 -57.88 -0.24 -9.11 16 7 C 0.71 11.55 8.54 -86.92 -0.74 10.81 16 8 O -0.59 -11.74 16.34 5.29 0.09 -11.65 16 9 N -0.73 -12.31 5.53 -66.42 -0.37 -12.67 16 10 C 0.13 2.43 6.15 -5.20 -0.03 2.40 16 11 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 12 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 13 N -0.55 -13.72 5.29 -10.97 -0.06 -13.77 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 18 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.14 -1.05 6.95 -25.83 -0.18 -1.23 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 26 H 0.06 0.36 7.96 -51.93 -0.41 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.97 7.10 -40.82 -0.29 3.68 16 33 H 0.41 6.67 7.45 -40.82 -0.30 6.36 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.09 0.61 7.98 -51.93 -0.41 0.19 16 39 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -31.43 325.81 -6.88 -38.31 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -5.73 Total: 15.79 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.26 Total: 11.16 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.06 Total: -58.84 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.17 Total: -26.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.43 -6.88 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595865242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.559 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds