Wall clock time and date at job start Mon Mar 30 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 112.84521 * 2 1 4 4 C 1.53778 * 113.61054 * 131.19373 * 2 1 3 5 5 C 1.53784 * 87.07915 * 89.11880 * 4 2 1 6 6 N 1.46495 * 113.61515 * 270.79465 * 5 4 2 7 7 C 1.34772 * 120.00099 * 280.68148 * 6 5 4 8 8 O 1.21588 * 120.00156 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00058 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00312 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47503 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99673 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00102 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99702 * 359.97438 * 14 13 11 16 16 C 1.38952 * 120.00155 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99901 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47014 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46941 * 119.99638 * 18 16 14 21 21 H 1.48495 * 109.47148 * 239.99347 * 18 16 14 22 22 C 1.53781 * 87.17497 * 25.38755 * 5 4 2 23 23 H 1.08998 * 109.47608 * 294.49375 * 1 2 3 24 24 H 1.09001 * 109.46928 * 54.49417 * 1 2 3 25 25 H 1.09001 * 109.47110 * 174.49177 * 1 2 3 26 26 H 1.09004 * 109.46969 * 191.19457 * 3 2 1 27 27 H 1.08997 * 109.47414 * 311.19407 * 3 2 1 28 28 H 1.08998 * 109.46956 * 71.19790 * 3 2 1 29 29 H 1.08990 * 113.62141 * 334.57057 * 4 2 1 30 30 H 1.09001 * 113.61360 * 203.66237 * 4 2 1 31 31 H 1.09002 * 113.61325 * 139.97394 * 5 4 2 32 32 H 0.97003 * 119.99961 * 100.68006 * 6 5 4 33 33 H 0.97003 * 120.00001 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47129 * 300.00742 * 10 9 7 35 35 H 1.09003 * 109.46838 * 59.99967 * 10 9 7 36 36 H 0.97000 * 119.99950 * 0.02562 * 13 11 10 37 37 H 0.97001 * 119.99902 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.61510 * 89.15485 * 22 5 4 39 39 H 1.09002 * 113.61535 * 220.06307 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0929 -2.0425 0.0020 6 7 0.8356 -2.7943 0.0040 7 6 0.6275 -3.7570 0.9239 8 8 1.4835 -4.0019 1.7520 9 7 -0.5295 -4.4483 0.9261 10 6 -0.7555 -5.4952 1.9257 11 6 -2.1144 -6.1099 1.7110 12 8 -2.8242 -5.7130 0.8111 13 7 -2.5407 -7.1014 2.5182 14 6 -3.7769 -7.6611 2.3225 15 1 -4.4092 -7.3071 1.5217 16 6 -4.2167 -8.6830 3.1551 17 7 -3.4474 -9.1133 4.1297 18 14 -5.9007 -9.4459 2.8879 19 1 -6.5642 -8.7889 1.7333 20 1 -5.7484 -10.8971 2.6119 21 1 -6.7282 -9.2580 4.1066 22 6 2.1448 -0.9317 -1.0602 23 1 -0.3634 0.4260 0.9351 24 1 -0.3633 0.5969 -0.8366 25 1 -0.3633 -1.0229 -0.0986 26 1 3.1942 1.3534 -0.1995 27 1 1.6414 2.0076 -0.7733 28 1 1.9599 1.8734 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6486 1.3496 31 1 2.9717 -2.6874 0.0026 32 1 0.1528 -2.5993 -0.6569 33 1 -1.2122 -4.2533 0.2652 34 1 0.0106 -6.2641 1.8262 35 1 -0.7065 -5.0607 2.9242 36 1 -1.9729 -7.4191 3.2376 37 1 -3.7542 -9.8269 4.7107 38 1 3.1575 -0.6532 -1.3516 39 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595865242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:17 Heat of formation + Delta-G solvation = -74.439568 kcal Electronic energy + Delta-G solvation = -20371.381536 eV Core-core repulsion = 17120.598093 eV Total energy + Delta-G solvation = -3250.783444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70690 -40.47405 -39.56853 -36.23518 -35.25251 -34.63658 -33.36417 -31.05191 -29.02742 -28.18450 -26.72065 -26.37721 -23.21033 -21.74029 -21.35846 -20.12645 -19.64526 -19.30096 -17.45149 -17.33555 -16.93609 -16.54356 -16.16183 -15.99486 -15.65259 -15.35193 -15.09326 -14.94287 -14.61700 -13.95829 -13.72656 -13.55035 -13.50740 -13.48608 -12.91803 -12.73207 -12.49303 -12.44500 -12.18776 -12.11013 -11.83448 -11.57899 -11.37352 -11.25353 -10.96959 -10.55698 -10.32888 -10.09756 -9.70506 -8.51093 -6.01308 1.35267 1.42662 1.55120 1.61972 1.89657 2.12676 2.28776 3.04004 3.16202 3.31658 3.52762 3.60181 3.87736 3.92879 4.21330 4.34633 4.43153 4.46072 4.58335 4.75499 4.78815 4.90005 4.90455 4.98093 5.01801 5.14821 5.20053 5.26998 5.31891 5.38766 5.39612 5.52066 5.74841 5.91711 5.95942 6.48045 7.03557 7.03633 7.43047 7.55676 7.94362 8.66177 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047225 B = 0.003091 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.766116 B = 9054.947826 C = 9320.311152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.145 4.145 5 C 0.131 3.869 6 N -0.714 5.714 7 C 0.705 3.295 8 O -0.629 6.629 9 N -0.725 5.725 10 C 0.142 3.858 11 C 0.435 3.565 12 O -0.624 6.624 13 N -0.560 5.560 14 C -0.336 4.336 15 H 0.087 0.913 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.117 4.117 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.116 0.884 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.465 16.877 -8.738 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.189 4.189 4 C -0.184 4.184 5 C 0.026 3.974 6 N -0.371 5.371 7 C 0.404 3.596 8 O -0.511 6.511 9 N -0.383 5.383 10 C 0.014 3.986 11 C 0.222 3.778 12 O -0.512 6.512 13 N -0.195 5.195 14 C -0.465 4.465 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.154 4.154 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.247 0.753 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.734 16.751 -8.435 21.609 hybrid contribution -1.130 -0.706 0.186 1.345 sum 9.605 16.045 -8.249 20.438 Atomic orbital electron populations 1.21760 0.93591 1.02062 1.02014 1.21857 0.95420 0.95207 0.95978 1.21695 1.01002 0.94423 1.01810 1.23482 1.01715 0.96360 0.96824 1.21745 0.85212 0.91657 0.98803 1.44887 1.20732 1.37333 1.34169 1.15960 0.81809 0.79677 0.82119 1.90878 1.45910 1.71821 1.42475 1.44692 1.18611 1.38727 1.36253 1.20564 0.94066 0.90949 0.93058 1.20398 0.89429 0.83337 0.84678 1.90465 1.59043 1.65719 1.35929 1.41845 1.16956 1.31466 1.29266 1.19775 0.93985 1.16930 1.15827 0.89551 1.26142 1.03428 0.96829 0.94805 1.69689 1.38860 1.28969 1.18182 0.84803 0.76760 0.77942 0.78421 1.19376 1.19628 1.19651 1.23402 1.03421 0.92674 0.95922 0.93360 0.90950 0.92707 0.91459 0.91781 0.93077 0.93828 0.88404 0.90680 0.75296 0.75300 0.89125 0.89238 0.76712 0.91071 0.86576 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.04 71.98 0.65 -1.55 16 2 C -0.08 -1.25 1.39 -51.60 -0.07 -1.32 16 3 C -0.13 -1.54 9.20 71.98 0.66 -0.88 16 4 C -0.15 -2.90 7.02 31.12 0.22 -2.68 16 5 C 0.13 2.66 3.95 45.52 0.18 2.84 16 6 N -0.71 -16.73 4.11 -455.30 -1.87 -18.60 16 7 C 0.70 22.88 8.54 179.06 1.53 24.41 16 8 O -0.63 -24.92 16.34 -3.99 -0.07 -24.98 16 9 N -0.73 -24.39 5.53 -482.31 -2.67 -27.06 16 10 C 0.14 5.35 6.15 85.63 0.53 5.87 16 11 C 0.43 20.23 7.85 87.66 0.69 20.92 16 12 O -0.62 -32.26 15.24 -3.07 -0.05 -32.31 16 13 N -0.56 -28.34 5.29 -306.99 -1.62 -29.96 16 14 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 15 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 17 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 18 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.12 -1.48 6.95 31.18 0.22 -1.26 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.97 4.99 -2.39 -0.01 0.95 16 26 H 0.07 0.65 7.96 -2.39 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 7.63 7.10 -92.71 -0.66 6.98 16 33 H 0.41 13.30 7.45 -92.71 -0.69 12.61 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 37 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.12 1.05 7.98 -2.39 -0.02 1.03 16 39 H 0.09 0.93 8.07 -2.39 -0.02 0.91 16 Total: -1.00 -67.27 325.81 0.92 -66.35 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -1.00 Total: 42.95 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 5.88 Total: 28.44 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.88 Total: -124.32 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -0.11 Total: -57.30 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -67.27 0.92 -66.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595865242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.088 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds