Wall clock time and date at job start Mon Mar 30 2020 04:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00344 * 2 1 4 4 O 1.20829 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00351 * 179.97438 * 3 2 1 6 6 C 1.53044 * 109.46153 * 180.02562 * 5 3 2 7 7 C 1.53196 * 109.31022 * 181.37469 * 6 5 3 8 8 N 1.46926 * 108.77673 * 305.36826 * 7 6 5 9 9 C 1.34777 * 120.62611 * 233.58909 * 8 7 6 10 10 O 1.21279 * 120.00455 * 5.29041 * 9 8 7 11 11 C 1.50701 * 119.99532 * 185.28822 * 9 8 7 12 12 H 1.08995 * 109.47308 * 34.57962 * 11 9 8 13 13 C 1.52999 * 109.47374 * 274.57792 * 11 9 8 14 14 C 1.50701 * 109.46885 * 154.58028 * 11 9 8 15 15 H 1.07993 * 120.00144 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00098 * 179.97438 * 14 11 9 17 17 N 1.31507 * 120.00388 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99862 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.46838 * 269.99540 * 18 16 14 20 20 H 1.48498 * 109.47207 * 29.99371 * 18 16 14 21 21 H 1.48502 * 109.47330 * 149.99759 * 18 16 14 22 22 C 1.46923 * 118.74163 * 53.85650 * 8 7 6 23 23 C 1.53037 * 109.45126 * 300.06906 * 5 3 2 24 24 H 1.09006 * 109.47017 * 59.99596 * 1 2 3 25 25 H 1.09000 * 109.47545 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47304 * 299.99907 * 1 2 3 27 27 H 1.09007 * 109.45616 * 60.03013 * 5 3 2 28 28 H 1.08999 * 109.49586 * 61.42520 * 6 5 3 29 29 H 1.09000 * 109.49717 * 301.32516 * 6 5 3 30 30 H 1.08997 * 109.57885 * 185.57746 * 7 6 5 31 31 H 1.09000 * 109.69959 * 65.22367 * 7 6 5 32 32 H 1.08996 * 109.47251 * 294.78164 * 13 11 9 33 33 H 1.09010 * 109.46921 * 54.77603 * 13 11 9 34 34 H 1.08995 * 109.47662 * 174.77592 * 13 11 9 35 35 H 0.96996 * 120.00656 * 180.02562 * 17 16 14 36 36 H 1.09008 * 109.58080 * 65.93117 * 22 8 7 37 37 H 1.08999 * 109.59081 * 186.35214 * 22 8 7 38 38 H 1.09002 * 109.49597 * 298.56613 * 23 5 3 39 39 H 1.08996 * 109.49928 * 58.66465 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0000 2.7425 0.0011 7 6 5.5297 2.8188 -0.0330 8 7 6.0675 2.0302 1.0839 9 6 6.9337 2.5798 1.9581 10 8 7.2024 3.7602 1.8848 11 6 7.5683 1.7275 3.0268 12 1 7.7409 0.7245 2.6367 13 6 6.6365 1.6504 4.2379 14 6 8.8821 2.3381 3.4418 15 1 9.2235 3.2515 2.9779 16 6 9.6481 1.7304 4.4139 17 7 10.7948 2.2629 4.7758 18 14 9.0578 0.1500 5.2159 19 1 8.2431 0.4770 6.4136 20 1 8.2314 -0.6169 4.2494 21 1 10.2297 -0.6666 5.6224 22 6 5.6479 0.6294 1.2263 23 6 4.1126 0.5797 1.2498 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9561 0.7809 -0.8895 28 1 3.6314 3.2304 0.9034 29 1 3.5911 3.2430 -0.8766 30 1 5.8459 3.8570 0.0670 31 1 5.8968 2.4141 -0.9762 32 1 6.5377 2.6400 4.6839 33 1 5.6560 1.2957 3.9199 34 1 7.0517 0.9606 4.9725 35 1 11.3340 1.8352 5.4594 36 1 6.0225 0.0483 0.3836 37 1 6.0423 0.2225 2.1575 38 1 3.7430 1.0884 2.1401 39 1 3.7839 -0.4594 1.2610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596643275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:26 Heat of formation + Delta-G solvation = -121.791471 kcal Electronic energy + Delta-G solvation = -21393.592111 eV Core-core repulsion = 18108.462584 eV Total energy + Delta-G solvation = -3285.129527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92314 -39.55258 -37.22234 -36.44980 -33.97603 -32.86308 -31.54600 -30.63309 -28.29684 -26.01994 -25.16337 -23.66183 -22.70001 -21.58561 -20.25979 -18.47735 -17.81335 -17.11748 -16.72899 -16.52736 -15.84146 -15.54236 -14.83068 -14.41618 -14.32470 -14.00045 -13.91992 -13.36055 -13.05817 -12.99607 -12.56591 -12.43294 -12.32699 -12.11446 -11.87197 -11.58428 -11.26216 -11.07666 -10.99310 -10.92856 -10.73966 -10.58805 -10.47555 -10.29176 -9.66224 -9.13209 -8.69295 -8.58574 -8.24461 -6.07015 -4.07225 1.98080 2.46313 3.22888 3.27800 3.35116 3.46376 3.52526 4.35842 4.36142 4.53484 4.59857 4.81210 4.88641 4.99684 5.01473 5.22109 5.23060 5.25303 5.28767 5.56467 5.60540 5.61267 5.76229 5.81611 5.94569 6.04254 6.12817 6.15418 6.21630 6.33244 6.46614 6.64578 6.96029 7.15719 7.51813 7.53776 7.96950 8.51609 9.03841 9.08929 9.51517 11.06103 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.004770 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.853240 B = 5868.568410 C = 6472.766651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.506 6.506 5 C -0.077 4.077 6 C -0.117 4.117 7 C 0.112 3.888 8 N -0.631 5.631 9 C 0.534 3.466 10 O -0.531 6.531 11 C -0.003 4.003 12 H 0.047 0.953 13 C -0.144 4.144 14 C -0.504 4.504 15 H 0.088 0.912 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.295 1.295 22 C 0.110 3.890 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.528 -8.583 -10.102 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.393 6.393 5 C -0.097 4.097 6 C -0.155 4.155 7 C -0.011 4.011 8 N -0.367 5.367 9 C 0.325 3.675 10 O -0.405 6.405 11 C -0.025 4.025 12 H 0.065 0.935 13 C -0.202 4.202 14 C -0.543 4.543 15 H 0.106 0.894 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.715 3.285 19 H -0.205 1.205 20 H -0.192 1.192 21 H -0.223 1.223 22 C -0.014 4.014 23 C -0.165 4.165 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.422 -7.630 -10.003 22.308 hybrid contribution -0.612 -0.911 0.497 1.205 sum -19.034 -8.541 -9.506 22.926 Atomic orbital electron populations 1.23258 0.76528 1.03635 1.02511 1.86517 1.23286 1.33625 1.84085 1.23950 0.92147 0.81210 0.71880 1.90669 1.67212 1.36403 1.45042 1.21136 0.86435 0.99939 1.02151 1.21859 0.96458 0.93091 1.04132 1.21456 0.91376 0.98744 0.89490 1.48355 1.47094 1.12007 1.29278 1.21326 0.76401 0.88589 0.81197 1.90574 1.60822 1.16933 1.72204 1.19332 0.96189 0.96094 0.90846 0.93509 1.22117 0.97134 1.02032 0.98895 1.20875 1.00208 1.11429 1.21741 0.89373 1.24964 0.94756 0.97046 0.96284 1.69874 1.12531 1.39789 1.31128 0.86905 0.77457 0.84034 0.80121 1.20472 1.19229 1.22252 1.21795 0.92642 0.83191 1.03769 1.22051 0.96760 1.01372 0.96366 0.91997 0.88112 0.91914 0.87089 0.90515 0.90163 0.88482 0.91873 0.91995 0.94749 0.93341 0.92513 0.91300 0.88231 0.90707 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 10.44 -39.25 -0.41 -3.99 16 3 C 0.47 5.35 7.26 36.00 0.26 5.61 16 4 O -0.51 -7.20 15.73 -18.75 -0.29 -7.49 16 5 C -0.08 -0.80 2.59 -91.73 -0.24 -1.04 16 6 C -0.12 -1.40 4.65 -26.61 -0.12 -1.52 16 7 C 0.11 1.55 6.44 -3.71 -0.02 1.53 16 8 N -0.63 -10.37 2.97 -172.50 -0.51 -10.88 16 9 C 0.53 11.69 6.79 -10.98 -0.07 11.61 16 10 O -0.53 -13.66 15.24 5.56 0.08 -13.58 16 11 C 0.00 -0.07 1.36 -92.92 -0.13 -0.20 16 12 H 0.05 1.02 5.78 -51.93 -0.30 0.72 16 13 C -0.14 -3.01 8.28 37.16 0.31 -2.70 16 14 C -0.50 -14.48 8.91 -34.44 -0.31 -14.79 16 15 H 0.09 2.89 7.28 -52.49 -0.38 2.51 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.00 24.32 -169.99 -4.13 16.87 16 19 H -0.28 -6.44 6.92 56.52 0.39 -6.05 16 20 H -0.27 -5.77 6.53 56.52 0.37 -5.40 16 21 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.11 1.39 5.95 -3.49 -0.02 1.37 16 23 C -0.13 -1.34 5.31 -26.39 -0.14 -1.48 16 24 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.10 1.54 7.00 -51.93 -0.36 1.18 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.03 0.58 7.21 -51.92 -0.37 0.20 16 34 H 0.05 1.02 3.42 -51.93 -0.18 0.85 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.10 1.36 4.90 -51.93 -0.25 1.11 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -34.73 310.06 -5.01 -39.74 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.67 Total: -0.27 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 0.48 Total: 1.67 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.26 Total: -37.61 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.62 Total: -25.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.13 Total: 16.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.73 -5.01 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596643275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.056 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds