Wall clock time and date at job start Mon Mar 30 2020 04:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00344 * 2 1 4 4 O 1.20829 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00351 * 179.97438 * 3 2 1 6 6 C 1.53044 * 109.46153 * 180.02562 * 5 3 2 7 7 C 1.53196 * 109.31022 * 181.37469 * 6 5 3 8 8 N 1.46926 * 108.77673 * 305.36826 * 7 6 5 9 9 C 1.34777 * 120.62611 * 233.58909 * 8 7 6 10 10 O 1.21279 * 120.00455 * 5.29041 * 9 8 7 11 11 C 1.50701 * 119.99532 * 185.28822 * 9 8 7 12 12 H 1.08995 * 109.47308 * 34.57962 * 11 9 8 13 13 C 1.52999 * 109.47374 * 274.57792 * 11 9 8 14 14 C 1.50701 * 109.46885 * 154.58028 * 11 9 8 15 15 H 1.07993 * 120.00144 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00098 * 179.97438 * 14 11 9 17 17 N 1.31507 * 120.00388 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99862 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.46838 * 269.99540 * 18 16 14 20 20 H 1.48498 * 109.47207 * 29.99371 * 18 16 14 21 21 H 1.48502 * 109.47330 * 149.99759 * 18 16 14 22 22 C 1.46923 * 118.74163 * 53.85650 * 8 7 6 23 23 C 1.53037 * 109.45126 * 300.06906 * 5 3 2 24 24 H 1.09006 * 109.47017 * 59.99596 * 1 2 3 25 25 H 1.09000 * 109.47545 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47304 * 299.99907 * 1 2 3 27 27 H 1.09007 * 109.45616 * 60.03013 * 5 3 2 28 28 H 1.08999 * 109.49586 * 61.42520 * 6 5 3 29 29 H 1.09000 * 109.49717 * 301.32516 * 6 5 3 30 30 H 1.08997 * 109.57885 * 185.57746 * 7 6 5 31 31 H 1.09000 * 109.69959 * 65.22367 * 7 6 5 32 32 H 1.08996 * 109.47251 * 294.78164 * 13 11 9 33 33 H 1.09010 * 109.46921 * 54.77603 * 13 11 9 34 34 H 1.08995 * 109.47662 * 174.77592 * 13 11 9 35 35 H 0.96996 * 120.00656 * 180.02562 * 17 16 14 36 36 H 1.09008 * 109.58080 * 65.93117 * 22 8 7 37 37 H 1.08999 * 109.59081 * 186.35214 * 22 8 7 38 38 H 1.09002 * 109.49597 * 298.56613 * 23 5 3 39 39 H 1.08996 * 109.49928 * 58.66465 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0000 2.7425 0.0011 7 6 5.5297 2.8188 -0.0330 8 7 6.0675 2.0302 1.0839 9 6 6.9337 2.5798 1.9581 10 8 7.2024 3.7602 1.8848 11 6 7.5683 1.7275 3.0268 12 1 7.7409 0.7245 2.6367 13 6 6.6365 1.6504 4.2379 14 6 8.8821 2.3381 3.4418 15 1 9.2235 3.2515 2.9779 16 6 9.6481 1.7304 4.4139 17 7 10.7948 2.2629 4.7758 18 14 9.0578 0.1500 5.2159 19 1 8.2431 0.4770 6.4136 20 1 8.2314 -0.6169 4.2494 21 1 10.2297 -0.6666 5.6224 22 6 5.6479 0.6294 1.2263 23 6 4.1126 0.5797 1.2498 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9561 0.7809 -0.8895 28 1 3.6314 3.2304 0.9034 29 1 3.5911 3.2430 -0.8766 30 1 5.8459 3.8570 0.0670 31 1 5.8968 2.4141 -0.9762 32 1 6.5377 2.6400 4.6839 33 1 5.6560 1.2957 3.9199 34 1 7.0517 0.9606 4.9725 35 1 11.3340 1.8352 5.4594 36 1 6.0225 0.0483 0.3836 37 1 6.0423 0.2225 2.1575 38 1 3.7430 1.0884 2.1401 39 1 3.7839 -0.4594 1.2610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596643275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:25 Heat of formation + Delta-G solvation = -146.822759 kcal Electronic energy + Delta-G solvation = -21394.677549 eV Core-core repulsion = 18108.462584 eV Total energy + Delta-G solvation = -3286.214965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83768 -40.93581 -38.40417 -37.43063 -35.88731 -34.20460 -33.25223 -31.90142 -29.02411 -27.20143 -27.06636 -24.92829 -23.92490 -22.76142 -21.30149 -19.83293 -18.90496 -18.63273 -17.94822 -17.55669 -17.22681 -17.05940 -16.26593 -15.92623 -15.35140 -15.12837 -14.92231 -14.73788 -14.46047 -14.22956 -14.04118 -13.71898 -13.50785 -13.30481 -13.05424 -12.81483 -12.76319 -12.51236 -12.23653 -12.15946 -11.87446 -11.76746 -11.66950 -11.44857 -11.41834 -11.22437 -10.75945 -10.38222 -9.58150 -8.26594 -6.34824 1.13466 1.35646 1.41504 1.53400 1.70204 1.86542 2.15604 2.36182 3.07376 3.47937 3.67430 3.76490 3.89940 4.06843 4.22149 4.31069 4.33688 4.34565 4.39332 4.42280 4.58566 4.66522 4.70905 4.72372 4.77515 4.79396 4.87568 4.89852 5.04325 5.08204 5.24427 5.38422 5.44357 5.52475 5.71942 6.23705 6.52960 6.70277 6.78146 7.26020 7.44992 8.91418 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.004770 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.853240 B = 5868.568410 C = 6472.766651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.541 6.541 5 C -0.073 4.073 6 C -0.108 4.108 7 C 0.111 3.889 8 N -0.620 5.620 9 C 0.528 3.472 10 O -0.590 6.590 11 C -0.004 4.004 12 H 0.075 0.925 13 C -0.139 4.139 14 C -0.521 4.521 15 H 0.021 0.979 16 C 0.007 3.993 17 N -0.954 5.954 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.220 1.220 21 H -0.297 1.297 22 C 0.099 3.901 23 C -0.119 4.119 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.057 0.943 27 H 0.144 0.856 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 -12.769 -10.932 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.092 4.092 6 C -0.146 4.146 7 C -0.012 4.012 8 N -0.355 5.355 9 C 0.318 3.682 10 O -0.469 6.469 11 C -0.025 4.025 12 H 0.092 0.908 13 C -0.196 4.196 14 C -0.559 4.559 15 H 0.040 0.960 16 C -0.190 4.190 17 N -0.593 5.593 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.142 1.142 21 H -0.225 1.225 22 C -0.023 4.023 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.162 0.838 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.229 -11.871 -10.882 26.646 hybrid contribution 0.218 0.466 0.650 0.829 sum -21.011 -11.405 -10.232 26.005 Atomic orbital electron populations 1.23536 0.75067 1.05700 1.02295 1.86500 1.24694 1.32513 1.83517 1.24082 0.92455 0.81147 0.70908 1.90670 1.68016 1.37633 1.46795 1.21132 0.85917 0.98507 1.03636 1.21711 0.94578 0.94859 1.03457 1.21608 0.92736 0.97118 0.89689 1.48328 1.45082 1.13861 1.28182 1.21183 0.77314 0.87720 0.81987 1.90552 1.63217 1.19230 1.73916 1.19271 0.93977 0.96796 0.92484 0.90771 1.22013 0.98898 1.01113 0.97616 1.21041 1.03308 1.09687 1.21878 0.96043 1.26054 0.94454 1.01771 0.96689 1.70076 1.14579 1.42382 1.32301 0.85734 0.77592 0.78487 0.79998 1.19132 1.14225 1.22499 1.22187 0.94264 0.80682 1.05143 1.22009 0.94789 1.03155 0.95734 0.92014 0.84922 0.92449 0.83811 0.93091 0.89030 0.91563 0.88664 0.94364 0.90213 0.92925 0.92349 0.87902 0.88571 0.92088 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.73 10.44 -51.38 -0.54 -6.27 16 3 C 0.47 9.32 7.26 71.24 0.52 9.84 16 4 O -0.54 -14.48 15.73 21.95 0.35 -14.14 16 5 C -0.07 -1.21 2.59 -11.51 -0.03 -1.24 16 6 C -0.11 -2.37 4.65 30.67 0.14 -2.23 16 7 C 0.11 2.92 6.44 86.36 0.56 3.47 16 8 N -0.62 -19.24 2.97 -818.06 -2.43 -21.66 16 9 C 0.53 23.30 6.79 87.66 0.60 23.90 16 10 O -0.59 -32.24 15.24 -3.03 -0.05 -32.28 16 11 C 0.00 -0.17 1.36 -12.29 -0.02 -0.19 16 12 H 0.07 2.97 5.78 -2.39 -0.01 2.95 16 13 C -0.14 -5.48 8.28 71.98 0.60 -4.88 16 14 C -0.52 -31.18 8.91 25.60 0.23 -30.95 16 15 H 0.02 1.52 7.28 -2.91 -0.02 1.50 16 16 C 0.01 0.40 5.45 84.66 0.46 0.86 16 17 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 18 Si 0.96 42.05 24.32 68.60 1.67 43.71 16 19 H -0.27 -11.11 6.92 99.48 0.69 -10.42 16 20 H -0.22 -7.95 6.53 99.48 0.65 -7.30 16 21 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 22 C 0.10 2.05 5.95 86.51 0.52 2.56 16 23 C -0.12 -1.93 5.31 30.82 0.16 -1.77 16 24 H 0.06 0.73 8.13 -2.38 -0.02 0.71 16 25 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.09 1.82 8.07 -2.39 -0.02 1.81 16 30 H 0.07 2.18 7.00 -2.39 -0.02 2.17 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.40 7.21 -2.38 -0.02 2.38 16 34 H 0.05 2.02 3.42 -2.39 -0.01 2.01 16 35 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.10 2.11 4.90 -2.39 -0.01 2.10 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -83.50 310.06 5.20 -78.30 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.34 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 4.93 Total: 0.88 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.13 Total: -82.54 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.24 Total: -52.69 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.67 Total: 43.71 kcal Total: -83.50 5.20 -78.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596643275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.525 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds