Wall clock time and date at job start Mon Mar 30 2020 04:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00054 * 2 1 4 4 O 1.20825 * 119.99654 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00006 * 180.02562 * 3 2 1 6 6 C 1.53049 * 109.44873 * 300.05466 * 5 3 2 7 7 C 1.53184 * 109.31145 * 178.61901 * 6 5 3 8 8 N 1.46932 * 108.77474 * 54.64415 * 7 6 5 9 9 C 1.34770 * 120.63487 * 126.36833 * 8 7 6 10 10 O 1.21278 * 120.00226 * 175.34979 * 9 8 7 11 11 C 1.50700 * 119.99901 * 355.33941 * 9 8 7 12 12 H 1.08998 * 109.47459 * 324.37525 * 11 9 8 13 13 C 1.53009 * 109.46808 * 84.37522 * 11 9 8 14 14 C 1.50698 * 109.47514 * 204.37030 * 11 9 8 15 15 H 1.08009 * 119.99417 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00424 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99718 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00332 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46987 * 59.99720 * 18 16 14 20 20 H 1.48501 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47234 * 300.00189 * 18 16 14 22 22 C 1.46932 * 118.73250 * 306.38456 * 8 7 6 23 23 C 1.53044 * 109.45994 * 180.02562 * 5 3 2 24 24 H 1.08995 * 109.46833 * 60.00580 * 1 2 3 25 25 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 299.99965 * 1 2 3 27 27 H 1.08994 * 109.46116 * 60.02362 * 5 3 2 28 28 H 1.09002 * 109.49153 * 58.67219 * 6 5 3 29 29 H 1.08992 * 109.49812 * 298.57913 * 6 5 3 30 30 H 1.08998 * 109.59545 * 294.85481 * 7 6 5 31 31 H 1.09006 * 109.58725 * 174.42264 * 7 6 5 32 32 H 1.09001 * 109.46600 * 306.30360 * 13 11 9 33 33 H 1.09002 * 109.47237 * 66.30023 * 13 11 9 34 34 H 1.09002 * 109.46794 * 186.30177 * 13 11 9 35 35 H 0.97002 * 119.99712 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58078 * 173.39496 * 22 8 7 37 37 H 1.08995 * 109.58693 * 293.68135 * 22 8 7 38 38 H 1.09004 * 109.49945 * 61.41675 * 23 5 3 39 39 H 1.09005 * 109.52073 * 301.33608 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1135 0.5795 1.2482 7 6 5.6444 0.6313 1.2271 8 7 6.0682 2.0306 1.0811 9 6 6.9343 2.5805 1.9550 10 8 7.3417 3.7088 1.7765 11 6 7.3964 1.7935 3.1543 12 1 6.5773 1.1744 3.5202 13 6 8.5725 0.8998 2.7555 14 6 7.8326 2.7427 4.2404 15 1 7.7800 3.8093 4.0786 16 6 8.2987 2.2497 5.4407 17 7 8.3631 0.9510 5.6375 18 14 8.8388 3.4264 6.7872 19 1 7.6968 4.2930 7.1746 20 1 9.2942 2.6508 7.9690 21 1 9.9540 4.2707 6.2889 22 6 5.5295 2.8189 -0.0357 23 6 4.0000 2.7426 0.0002 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9555 0.7813 -0.8910 28 1 3.7848 -0.4597 1.2593 29 1 3.7445 1.0879 2.1388 30 1 6.0184 0.0467 0.3866 31 1 6.0366 0.2262 2.1600 32 1 8.2913 0.2914 1.8959 33 1 9.4295 1.5214 2.4960 34 1 8.8345 0.2500 3.5905 35 1 8.6914 0.6041 6.4818 36 1 5.8459 3.8572 0.0640 37 1 5.8961 2.4142 -0.9790 38 1 3.6320 3.2302 0.9029 39 1 3.5904 3.2439 -0.8768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596643276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:28 Heat of formation + Delta-G solvation = -131.299547 kcal Electronic energy + Delta-G solvation = -21302.113612 eV Core-core repulsion = 18016.571784 eV Total energy + Delta-G solvation = -3285.541828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82349 -39.38726 -37.10418 -36.34652 -33.83911 -32.74829 -31.27892 -30.03610 -28.19329 -25.82938 -25.17172 -23.43328 -22.59660 -21.42334 -20.09242 -18.49921 -17.71909 -16.93186 -16.51192 -16.31653 -15.78001 -15.20046 -14.67793 -14.36776 -14.22264 -13.85248 -13.73491 -13.16355 -12.95058 -12.66221 -12.51790 -12.28445 -12.10345 -11.77873 -11.43720 -11.20142 -10.98736 -10.95520 -10.80175 -10.71065 -10.67897 -10.60443 -10.36835 -10.24359 -9.99561 -8.98397 -8.58029 -8.30084 -8.11810 -6.03935 -4.06451 2.07525 2.55723 3.36338 3.38757 3.43522 3.62334 3.70525 4.46298 4.47164 4.66541 4.70239 4.89067 4.96637 5.10840 5.14353 5.29546 5.31016 5.38761 5.41986 5.72085 5.74119 5.76981 5.89809 6.00619 6.10884 6.19703 6.30273 6.32413 6.65763 6.83250 6.97275 7.08493 7.44862 7.61086 7.75692 7.96586 8.08009 8.37495 8.98920 9.20849 9.58349 11.03942 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.004487 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.742087 B = 6238.539250 C = 6482.252363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.507 6.507 5 C -0.077 4.077 6 C -0.127 4.127 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.524 3.476 10 O -0.546 6.546 11 C 0.031 3.969 12 H 0.049 0.951 13 C -0.128 4.128 14 C -0.501 4.501 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.112 3.888 23 C -0.117 4.117 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.012 0.988 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -6.155 -11.892 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.096 4.096 6 C -0.166 4.166 7 C -0.013 4.013 8 N -0.366 5.366 9 C 0.316 3.684 10 O -0.422 6.422 11 C 0.010 3.990 12 H 0.066 0.934 13 C -0.187 4.187 14 C -0.540 4.540 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.011 4.011 23 C -0.156 4.156 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.932 -5.360 -11.826 17.634 hybrid contribution -0.135 0.530 0.659 0.856 sum -12.067 -4.830 -11.167 17.136 Atomic orbital electron populations 1.23250 0.76603 1.03598 1.02475 1.86521 1.23230 1.33640 1.84091 1.23967 0.92173 0.81184 0.71804 1.90662 1.67223 1.36427 1.45124 1.21135 0.86380 0.99870 1.02216 1.21980 0.97029 1.01314 0.96270 1.21726 0.92578 0.83024 1.03932 1.48413 1.47029 1.12154 1.28998 1.22041 0.75903 0.87159 0.83279 1.90523 1.56069 1.20177 1.75382 1.18895 0.95899 0.94964 0.89234 0.93356 1.21714 0.98171 0.99198 0.99577 1.21042 1.42527 0.93348 0.97066 0.91327 1.24917 0.95513 0.95261 0.98324 1.69867 1.47239 1.11317 1.25066 0.86522 0.79206 0.80778 0.80742 1.20250 1.21328 1.20139 1.21421 0.91368 0.98625 0.89686 1.21859 0.96462 0.93195 1.04051 0.92060 0.88139 0.91905 0.87246 0.89513 0.90577 0.91722 0.87569 0.96902 0.94555 0.89145 0.92891 0.88769 0.92194 0.90478 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.92 10.44 -39.26 -0.41 -4.33 16 3 C 0.47 5.83 7.25 36.00 0.26 6.09 16 4 O -0.51 -7.70 15.73 -18.75 -0.29 -8.00 16 5 C -0.08 -0.88 2.59 -91.73 -0.24 -1.11 16 6 C -0.13 -1.53 5.30 -26.61 -0.14 -1.67 16 7 C 0.11 1.55 5.78 -3.71 -0.02 1.53 16 8 N -0.63 -11.03 2.97 -172.77 -0.51 -11.54 16 9 C 0.52 11.99 6.80 -10.99 -0.07 11.91 16 10 O -0.55 -14.29 15.23 5.56 0.08 -14.21 16 11 C 0.03 0.76 1.78 -92.92 -0.17 0.60 16 12 H 0.05 1.19 6.51 -51.93 -0.34 0.85 16 13 C -0.13 -2.96 8.62 37.16 0.32 -2.64 16 14 C -0.50 -14.17 8.33 -34.44 -0.29 -14.45 16 15 H 0.07 2.05 7.02 -52.48 -0.37 1.68 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.90 -24.78 11.39 55.43 0.63 -24.15 16 18 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.11 1.65 6.42 -3.71 -0.02 1.63 16 23 C -0.12 -1.52 4.65 -26.61 -0.12 -1.65 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.66 5.15 -51.93 -0.27 1.39 16 32 H 0.01 0.24 7.39 -51.93 -0.38 -0.15 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 2.24 6.26 -51.93 -0.33 1.92 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.09 1.57 7.03 -51.93 -0.37 1.21 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 39 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -32.64 317.05 -6.09 -38.73 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.82 Total: -1.18 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 0.48 Total: 3.16 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.12 Total: -35.69 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.62 Total: -26.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.64 -6.09 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596643276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.568 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds