Wall clock time and date at job start Mon Mar 30 2020 04:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00054 * 2 1 4 4 O 1.20825 * 119.99654 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00006 * 180.02562 * 3 2 1 6 6 C 1.53049 * 109.44873 * 300.05466 * 5 3 2 7 7 C 1.53184 * 109.31145 * 178.61901 * 6 5 3 8 8 N 1.46932 * 108.77474 * 54.64415 * 7 6 5 9 9 C 1.34770 * 120.63487 * 126.36833 * 8 7 6 10 10 O 1.21278 * 120.00226 * 175.34979 * 9 8 7 11 11 C 1.50700 * 119.99901 * 355.33941 * 9 8 7 12 12 H 1.08998 * 109.47459 * 324.37525 * 11 9 8 13 13 C 1.53009 * 109.46808 * 84.37522 * 11 9 8 14 14 C 1.50698 * 109.47514 * 204.37030 * 11 9 8 15 15 H 1.08009 * 119.99417 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00424 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99718 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00332 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46987 * 59.99720 * 18 16 14 20 20 H 1.48501 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47234 * 300.00189 * 18 16 14 22 22 C 1.46932 * 118.73250 * 306.38456 * 8 7 6 23 23 C 1.53044 * 109.45994 * 180.02562 * 5 3 2 24 24 H 1.08995 * 109.46833 * 60.00580 * 1 2 3 25 25 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47304 * 299.99965 * 1 2 3 27 27 H 1.08994 * 109.46116 * 60.02362 * 5 3 2 28 28 H 1.09002 * 109.49153 * 58.67219 * 6 5 3 29 29 H 1.08992 * 109.49812 * 298.57913 * 6 5 3 30 30 H 1.08998 * 109.59545 * 294.85481 * 7 6 5 31 31 H 1.09006 * 109.58725 * 174.42264 * 7 6 5 32 32 H 1.09001 * 109.46600 * 306.30360 * 13 11 9 33 33 H 1.09002 * 109.47237 * 66.30023 * 13 11 9 34 34 H 1.09002 * 109.46794 * 186.30177 * 13 11 9 35 35 H 0.97002 * 119.99712 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58078 * 173.39496 * 22 8 7 37 37 H 1.08995 * 109.58693 * 293.68135 * 22 8 7 38 38 H 1.09004 * 109.49945 * 61.41675 * 23 5 3 39 39 H 1.09005 * 109.52073 * 301.33608 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1135 0.5795 1.2482 7 6 5.6444 0.6313 1.2271 8 7 6.0682 2.0306 1.0811 9 6 6.9343 2.5805 1.9550 10 8 7.3417 3.7088 1.7765 11 6 7.3964 1.7935 3.1543 12 1 6.5773 1.1744 3.5202 13 6 8.5725 0.8998 2.7555 14 6 7.8326 2.7427 4.2404 15 1 7.7800 3.8093 4.0786 16 6 8.2987 2.2497 5.4407 17 7 8.3631 0.9510 5.6375 18 14 8.8388 3.4264 6.7872 19 1 7.6968 4.2930 7.1746 20 1 9.2942 2.6508 7.9690 21 1 9.9540 4.2707 6.2889 22 6 5.5295 2.8189 -0.0357 23 6 4.0000 2.7426 0.0002 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9555 0.7813 -0.8910 28 1 3.7848 -0.4597 1.2593 29 1 3.7445 1.0879 2.1388 30 1 6.0184 0.0467 0.3866 31 1 6.0366 0.2262 2.1600 32 1 8.2913 0.2914 1.8959 33 1 9.4295 1.5214 2.4960 34 1 8.8345 0.2500 3.5905 35 1 8.6914 0.6041 6.4818 36 1 5.8459 3.8572 0.0640 37 1 5.8961 2.4142 -0.9790 38 1 3.6320 3.2302 0.9029 39 1 3.5904 3.2439 -0.8768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596643276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:27 Heat of formation + Delta-G solvation = -151.887754 kcal Electronic energy + Delta-G solvation = -21303.006384 eV Core-core repulsion = 18016.571784 eV Total energy + Delta-G solvation = -3286.434600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82942 -40.85688 -38.37841 -37.43197 -35.83022 -34.12411 -32.75032 -31.65331 -29.00821 -27.23936 -26.99190 -24.77913 -23.94899 -22.68330 -21.25982 -19.94263 -18.70288 -18.41060 -17.93572 -17.58135 -17.12101 -16.88628 -16.26124 -15.92595 -15.21098 -15.07955 -14.74766 -14.69130 -14.38468 -14.11616 -13.78619 -13.58282 -13.20999 -13.11089 -12.92691 -12.80887 -12.63895 -12.60102 -12.29982 -12.15111 -12.03748 -11.87059 -11.76526 -11.67174 -11.41569 -11.02221 -10.58636 -10.20783 -9.54280 -8.15223 -6.24541 1.12289 1.40784 1.42075 1.50417 1.71243 1.93069 2.22015 2.46531 3.14657 3.48847 3.67644 3.76486 3.99325 4.12763 4.25301 4.32422 4.33621 4.34132 4.44378 4.66943 4.70140 4.74202 4.77090 4.80976 4.89110 4.93979 5.02037 5.06774 5.07671 5.24884 5.37462 5.48603 5.69823 5.77738 5.95078 6.20417 6.60025 6.69228 6.80801 7.39754 7.51551 8.90653 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.004487 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.742087 B = 6238.539250 C = 6482.252363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.541 6.541 5 C -0.071 4.071 6 C -0.119 4.119 7 C 0.104 3.896 8 N -0.621 5.621 9 C 0.520 3.480 10 O -0.592 6.592 11 C 0.028 3.972 12 H 0.047 0.953 13 C -0.114 4.114 14 C -0.532 4.532 15 H 0.040 0.960 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.272 1.272 21 H -0.279 1.279 22 C 0.112 3.888 23 C -0.109 4.109 24 H 0.063 0.937 25 H 0.133 0.867 26 H 0.055 0.945 27 H 0.147 0.853 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -8.121 -13.212 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.431 6.431 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.018 4.018 8 N -0.355 5.355 9 C 0.312 3.688 10 O -0.473 6.473 11 C 0.007 3.993 12 H 0.064 0.936 13 C -0.172 4.172 14 C -0.571 4.571 15 H 0.058 0.942 16 C -0.175 4.175 17 N -0.545 5.545 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.197 1.197 21 H -0.205 1.205 22 C -0.010 4.010 23 C -0.148 4.148 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.816 -7.391 -13.167 19.805 hybrid contribution 0.031 1.078 1.032 1.493 sum -12.785 -6.313 -12.134 18.723 Atomic orbital electron populations 1.23542 0.75031 1.05732 1.02306 1.86504 1.24757 1.32513 1.83511 1.24087 0.92472 0.81164 0.70885 1.90659 1.67991 1.37606 1.46821 1.21124 0.85935 0.98578 1.03354 1.21904 0.95345 1.02897 0.95604 1.22010 0.93995 0.80995 1.04753 1.48363 1.45145 1.13747 1.28272 1.21674 0.76962 0.86418 0.83775 1.90493 1.58347 1.21875 1.76538 1.18812 0.96298 0.94650 0.89525 0.93574 1.21515 0.96833 0.98575 1.00299 1.21204 1.43983 0.92758 0.99126 0.94171 1.25514 0.95330 0.96783 0.99857 1.69929 1.46984 1.12036 1.25586 0.85722 0.78587 0.79183 0.78811 1.20230 1.19663 1.20452 1.21602 0.92420 0.97137 0.89888 1.21733 0.94937 0.94751 1.03341 0.91803 0.84880 0.92605 0.83518 0.86510 0.93107 0.87731 0.89305 0.93035 0.96476 0.90934 0.92503 0.91407 0.88472 0.93549 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.73 10.44 -51.44 -0.54 -7.27 16 3 C 0.47 10.66 7.25 71.24 0.52 11.18 16 4 O -0.54 -15.84 15.73 21.97 0.35 -15.49 16 5 C -0.07 -1.40 2.59 -11.51 -0.03 -1.43 16 6 C -0.12 -2.54 5.30 30.67 0.16 -2.38 16 7 C 0.10 2.64 5.78 86.36 0.50 3.14 16 8 N -0.62 -21.10 2.97 -818.91 -2.43 -23.53 16 9 C 0.52 24.21 6.80 87.66 0.60 24.80 16 10 O -0.59 -32.25 15.23 -3.02 -0.05 -32.29 16 11 C 0.03 1.41 1.78 -12.28 -0.02 1.39 16 12 H 0.05 2.31 6.51 -2.39 -0.02 2.29 16 13 C -0.11 -5.25 8.62 71.99 0.62 -4.63 16 14 C -0.53 -31.06 8.33 25.60 0.21 -30.85 16 15 H 0.04 2.52 7.02 -2.91 -0.02 2.50 16 16 C 0.02 1.39 5.30 84.65 0.45 1.84 16 17 N -0.91 -50.23 11.39 21.45 0.24 -49.99 16 18 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 C 0.11 3.12 6.42 86.36 0.55 3.68 16 23 C -0.11 -2.68 4.65 30.67 0.14 -2.53 16 24 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 2.62 5.15 -2.38 -0.01 2.61 16 32 H 0.05 1.91 7.39 -2.39 -0.02 1.89 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 3.59 6.26 -2.39 -0.01 3.58 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.07 2.29 7.03 -2.39 -0.02 2.27 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 39 H 0.09 2.04 8.07 -2.38 -0.02 2.02 16 Total: -1.00 -73.43 317.05 5.54 -67.89 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.04 Total: 7.84 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.90 Total: 5.78 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -2.19 Total: -73.52 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -0.24 Total: -55.05 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.43 5.54 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596643276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.993 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds