Wall clock time and date at job start Mon Mar 30 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00171 * 2 1 4 4 O 1.20829 * 119.99700 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00046 * 179.97438 * 3 2 1 6 6 N 1.46501 * 110.43937 * 325.70658 * 5 3 2 7 7 C 1.34775 * 119.99800 * 57.45389 * 6 5 3 8 8 O 1.21276 * 120.00281 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00079 * 180.02562 * 7 6 5 10 10 H 1.08995 * 109.47244 * 60.00103 * 9 7 6 11 11 C 1.53005 * 109.46875 * 299.99978 * 9 7 6 12 12 C 1.50697 * 109.47389 * 180.02562 * 9 7 6 13 13 H 1.07998 * 120.00326 * 95.18052 * 12 9 7 14 14 C 1.37878 * 119.99954 * 275.18600 * 12 9 7 15 15 N 1.31519 * 119.99839 * 355.36647 * 14 12 9 16 16 Si 1.86800 * 120.00209 * 175.37221 * 14 12 9 17 17 H 1.48496 * 109.47039 * 89.99777 * 16 14 12 18 18 H 1.48503 * 109.46934 * 209.99656 * 16 14 12 19 19 H 1.48494 * 109.46947 * 329.99592 * 16 14 12 20 20 C 1.54894 * 110.59875 * 88.32185 * 5 3 2 21 21 C 1.54893 * 102.74919 * 156.67356 * 20 5 3 22 22 C 1.54271 * 104.19561 * 322.06079 * 21 20 5 23 23 C 1.53879 * 106.59806 * 23.60986 * 22 21 20 24 24 H 1.08997 * 109.46346 * 299.99442 * 1 2 3 25 25 H 1.08998 * 109.47015 * 59.99299 * 1 2 3 26 26 H 1.08997 * 109.46887 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00187 * 237.46050 * 6 5 3 28 28 H 1.08998 * 109.47279 * 295.20073 * 11 9 7 29 29 H 1.08998 * 109.46837 * 55.20024 * 11 9 7 30 30 H 1.09005 * 109.46967 * 175.20096 * 11 9 7 31 31 H 0.97004 * 119.99803 * 5.42202 * 15 14 12 32 32 H 1.08999 * 110.75812 * 274.99186 * 20 5 3 33 33 H 1.09002 * 110.75025 * 38.36229 * 20 5 3 34 34 H 1.08996 * 110.48605 * 203.37890 * 21 20 5 35 35 H 1.08998 * 110.48153 * 80.73705 * 21 20 5 36 36 H 1.08990 * 110.03044 * 264.32334 * 22 21 20 37 37 H 1.09002 * 110.02705 * 142.89386 * 22 21 20 38 38 H 1.08997 * 110.02914 * 240.71587 * 23 22 21 39 39 H 1.08996 * 110.03294 * 119.28612 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1363 0.1692 0.7745 7 6 3.8496 -1.1048 0.4411 8 8 3.1202 -1.3360 -0.4998 9 6 4.4353 -2.2422 1.2375 10 1 4.1129 -2.1628 2.2756 11 6 5.9626 -2.1776 1.1715 12 6 3.9633 -3.5531 0.6633 13 1 4.5766 -4.0817 -0.0514 14 6 2.7483 -4.0776 1.0502 15 7 2.0432 -3.4817 1.9870 16 14 2.1037 -5.6345 0.2440 17 1 2.5764 -6.8184 1.0055 18 1 0.6188 -5.6104 0.2380 19 1 2.6032 -5.7122 -1.1522 20 6 4.1133 1.2606 -1.4485 21 6 5.4986 1.9370 -1.2976 22 6 5.2643 3.0510 -0.2564 23 6 4.0358 2.6299 0.5690 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.7199 0.3540 1.5269 28 1 6.2892 -2.3422 0.1447 29 1 6.2995 -1.1968 1.5071 30 1 6.3870 -2.9477 1.8157 31 1 2.3389 -2.6322 2.3501 32 1 4.2200 0.2383 -1.8112 33 1 3.4701 1.8412 -2.1098 34 1 5.8202 2.3640 -2.2475 35 1 6.2346 1.2212 -0.9314 36 1 5.0692 3.9976 -0.7601 37 1 6.1354 3.1451 0.3920 38 1 3.2444 3.3724 0.4658 39 1 4.3106 2.5199 1.6179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:21 Heat of formation + Delta-G solvation = -132.041160 kcal Electronic energy + Delta-G solvation = -22540.936767 eV Core-core repulsion = 19255.362780 eV Total energy + Delta-G solvation = -3285.573987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63257 -38.66209 -37.27306 -35.73420 -33.67632 -32.84758 -30.75314 -28.80445 -28.38559 -26.85420 -24.58725 -22.84464 -22.34084 -20.80340 -19.68420 -18.96536 -17.55755 -16.86224 -16.48057 -15.83752 -15.58987 -15.21998 -14.77193 -14.18957 -13.67442 -13.63707 -13.31398 -12.95540 -12.81462 -12.57563 -12.05060 -11.68642 -11.58573 -11.44284 -11.28527 -11.27293 -11.16117 -11.00453 -10.94686 -10.67579 -10.49729 -10.18501 -10.11262 -10.02688 -9.72510 -8.75666 -8.38651 -8.36328 -8.16560 -6.31661 -4.02083 2.52967 3.23797 3.46471 3.54891 3.69192 3.88693 3.98216 4.43275 4.59319 4.61668 4.91472 5.26078 5.39388 5.41642 5.47316 5.53099 5.59429 5.63327 5.66202 5.79346 5.87677 6.02181 6.04752 6.08814 6.17532 6.21449 6.28517 6.37127 6.43023 6.53233 6.90471 7.03270 7.10948 7.18626 7.98042 8.22846 8.41639 8.50906 8.90622 9.50968 9.69635 11.07071 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.007653 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.244883 B = 3657.750372 C = 4459.153026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.295 6.295 3 C 0.461 3.539 4 O -0.531 6.531 5 C 0.182 3.818 6 N -0.739 5.739 7 C 0.501 3.499 8 O -0.489 6.489 9 C 0.011 3.989 10 H 0.054 0.946 11 C -0.124 4.124 12 C -0.569 4.569 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.902 5.902 16 Si 1.072 2.928 17 H -0.290 1.290 18 H -0.286 1.286 19 H -0.288 1.288 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.121 4.121 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.394 0.606 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.266 0.734 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 11.069 -2.432 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.207 6.207 3 C 0.304 3.696 4 O -0.421 6.421 5 C 0.092 3.908 6 N -0.397 5.397 7 C 0.289 3.711 8 O -0.360 6.360 9 C -0.011 4.011 10 H 0.071 0.929 11 C -0.182 4.182 12 C -0.607 4.607 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.538 5.538 16 Si 0.901 3.099 17 H -0.217 1.217 18 H -0.212 1.212 19 H -0.214 1.214 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.229 0.771 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.285 10.004 -3.098 10.976 hybrid contribution 1.137 1.419 0.311 1.845 sum 4.423 11.422 -2.786 12.562 Atomic orbital electron populations 1.23220 0.78341 1.03713 1.00852 1.87154 1.21566 1.30533 1.81463 1.24162 0.92071 0.82004 0.71387 1.90572 1.67035 1.36978 1.47543 1.20740 0.85594 0.89422 0.95028 1.46689 1.53106 1.05176 1.34684 1.22753 0.80262 0.82275 0.85818 1.90556 1.33628 1.83335 1.28431 1.19101 0.92364 0.92767 0.96856 0.92854 1.21654 0.96790 0.98829 1.00879 1.21561 1.06256 1.04107 1.28804 0.93032 1.25735 0.93445 1.03493 0.94666 1.70769 1.41274 1.17428 1.24288 0.83509 0.76259 0.74492 0.75642 1.21705 1.21173 1.21434 1.22810 0.96368 1.03143 0.93683 1.22324 0.97001 0.97355 0.98929 1.22115 0.97211 0.98834 0.97586 1.22431 0.99134 0.94480 0.99858 0.92866 0.92896 0.88074 0.77108 0.93691 0.95252 0.92886 0.92286 0.88901 0.90940 0.91314 0.91017 0.91430 0.91390 0.88826 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 101.05 1.07 1.69 16 2 O -0.29 -6.58 6.59 -47.46 -0.31 -6.89 16 3 C 0.46 9.21 6.81 36.00 0.25 9.46 16 4 O -0.53 -10.75 15.33 -18.75 -0.29 -11.04 16 5 C 0.18 3.04 0.76 -131.31 -0.10 2.94 16 6 N -0.74 -13.16 4.96 -47.14 -0.23 -13.39 16 7 C 0.50 11.35 6.06 -10.98 -0.07 11.28 16 8 O -0.49 -12.74 11.67 -19.22 -0.22 -12.96 16 9 C 0.01 0.25 2.36 -92.92 -0.22 0.04 16 10 H 0.05 1.33 6.68 -51.93 -0.35 0.98 16 11 C -0.12 -2.37 9.11 37.16 0.34 -2.04 16 12 C -0.57 -15.73 7.55 -34.44 -0.26 -15.99 16 13 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 14 C 0.03 0.92 5.46 -17.82 -0.10 0.82 16 15 N -0.90 -26.79 13.62 55.43 0.76 -26.03 16 16 Si 1.07 25.87 29.91 -169.99 -5.08 20.78 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.12 -1.90 5.72 -24.73 -0.14 -2.04 16 21 C -0.12 -1.42 6.79 -25.07 -0.17 -1.59 16 22 C -0.12 -1.27 6.80 -25.61 -0.17 -1.44 16 23 C -0.12 -1.58 5.97 -25.61 -0.15 -1.73 16 24 H 0.05 0.93 8.13 -51.93 -0.42 0.50 16 25 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 26 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 27 H 0.39 5.93 7.64 -40.82 -0.31 5.62 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.45 7.43 -51.93 -0.39 0.07 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.27 7.87 6.67 -40.82 -0.27 7.60 16 32 H 0.09 1.71 6.63 -51.93 -0.34 1.37 16 33 H 0.07 1.09 8.05 -51.93 -0.42 0.68 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.30 6.79 -51.93 -0.35 0.94 16 39 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -32.96 316.07 -6.20 -39.16 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.84 Total: 4.21 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 0.27 Total: 1.40 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.52 Total: -39.42 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.82 Total: -30.90 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.96 -6.20 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.881 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds