Wall clock time and date at job start Mon Mar 30 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00171 * 2 1 4 4 O 1.20829 * 119.99700 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00046 * 179.97438 * 3 2 1 6 6 N 1.46501 * 110.43937 * 325.70658 * 5 3 2 7 7 C 1.34775 * 119.99800 * 57.45389 * 6 5 3 8 8 O 1.21276 * 120.00281 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00079 * 180.02562 * 7 6 5 10 10 H 1.08995 * 109.47244 * 60.00103 * 9 7 6 11 11 C 1.53005 * 109.46875 * 299.99978 * 9 7 6 12 12 C 1.50697 * 109.47389 * 180.02562 * 9 7 6 13 13 H 1.07998 * 120.00326 * 95.18052 * 12 9 7 14 14 C 1.37878 * 119.99954 * 275.18600 * 12 9 7 15 15 N 1.31519 * 119.99839 * 355.36647 * 14 12 9 16 16 Si 1.86800 * 120.00209 * 175.37221 * 14 12 9 17 17 H 1.48496 * 109.47039 * 89.99777 * 16 14 12 18 18 H 1.48503 * 109.46934 * 209.99656 * 16 14 12 19 19 H 1.48494 * 109.46947 * 329.99592 * 16 14 12 20 20 C 1.54894 * 110.59875 * 88.32185 * 5 3 2 21 21 C 1.54893 * 102.74919 * 156.67356 * 20 5 3 22 22 C 1.54271 * 104.19561 * 322.06079 * 21 20 5 23 23 C 1.53879 * 106.59806 * 23.60986 * 22 21 20 24 24 H 1.08997 * 109.46346 * 299.99442 * 1 2 3 25 25 H 1.08998 * 109.47015 * 59.99299 * 1 2 3 26 26 H 1.08997 * 109.46887 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00187 * 237.46050 * 6 5 3 28 28 H 1.08998 * 109.47279 * 295.20073 * 11 9 7 29 29 H 1.08998 * 109.46837 * 55.20024 * 11 9 7 30 30 H 1.09005 * 109.46967 * 175.20096 * 11 9 7 31 31 H 0.97004 * 119.99803 * 5.42202 * 15 14 12 32 32 H 1.08999 * 110.75812 * 274.99186 * 20 5 3 33 33 H 1.09002 * 110.75025 * 38.36229 * 20 5 3 34 34 H 1.08996 * 110.48605 * 203.37890 * 21 20 5 35 35 H 1.08998 * 110.48153 * 80.73705 * 21 20 5 36 36 H 1.08990 * 110.03044 * 264.32334 * 22 21 20 37 37 H 1.09002 * 110.02705 * 142.89386 * 22 21 20 38 38 H 1.08997 * 110.02914 * 240.71587 * 23 22 21 39 39 H 1.08996 * 110.03294 * 119.28612 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1363 0.1692 0.7745 7 6 3.8496 -1.1048 0.4411 8 8 3.1202 -1.3360 -0.4998 9 6 4.4353 -2.2422 1.2375 10 1 4.1129 -2.1628 2.2756 11 6 5.9626 -2.1776 1.1715 12 6 3.9633 -3.5531 0.6633 13 1 4.5766 -4.0817 -0.0514 14 6 2.7483 -4.0776 1.0502 15 7 2.0432 -3.4817 1.9870 16 14 2.1037 -5.6345 0.2440 17 1 2.5764 -6.8184 1.0055 18 1 0.6188 -5.6104 0.2380 19 1 2.6032 -5.7122 -1.1522 20 6 4.1133 1.2606 -1.4485 21 6 5.4986 1.9370 -1.2976 22 6 5.2643 3.0510 -0.2564 23 6 4.0358 2.6299 0.5690 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.7199 0.3540 1.5269 28 1 6.2892 -2.3422 0.1447 29 1 6.2995 -1.1968 1.5071 30 1 6.3870 -2.9477 1.8157 31 1 2.3389 -2.6322 2.3501 32 1 4.2200 0.2383 -1.8112 33 1 3.4701 1.8412 -2.1098 34 1 5.8202 2.3640 -2.2475 35 1 6.2346 1.2212 -0.9314 36 1 5.0692 3.9976 -0.7601 37 1 6.1354 3.1451 0.3920 38 1 3.2444 3.3724 0.4658 39 1 4.3106 2.5199 1.6179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:21 Heat of formation + Delta-G solvation = -152.976091 kcal Electronic energy + Delta-G solvation = -22541.844574 eV Core-core repulsion = 19255.362780 eV Total energy + Delta-G solvation = -3286.481794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11946 -40.29650 -38.71424 -37.30736 -35.64595 -34.37680 -32.58221 -29.90093 -29.77211 -28.26381 -26.57188 -24.60688 -23.73316 -22.08478 -21.04237 -20.53297 -19.14369 -18.67947 -18.09378 -17.37031 -17.19837 -16.57862 -16.03229 -15.91613 -15.62516 -15.21662 -14.66249 -14.52251 -14.24863 -14.19105 -13.57896 -13.34496 -13.05188 -12.86882 -12.75516 -12.66028 -12.56379 -12.39809 -12.23852 -12.04775 -12.00425 -11.77190 -11.73815 -11.52894 -11.29352 -10.80830 -10.41554 -10.06253 -9.95252 -8.53241 -6.22786 0.99145 1.51346 1.62403 1.77922 1.79562 2.22170 2.37565 2.61347 3.26335 3.36823 3.50316 3.74191 4.08417 4.14451 4.17640 4.30103 4.37436 4.41477 4.50591 4.54447 4.57260 4.64514 4.72245 4.80418 4.89687 4.94631 5.02855 5.14771 5.23423 5.34159 5.39175 5.42204 5.46409 5.62445 6.01037 6.24657 6.62540 6.67577 6.94037 7.54296 7.79177 8.85996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.007653 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.244883 B = 3657.750372 C = 4459.153026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.328 6.328 3 C 0.451 3.549 4 O -0.539 6.539 5 C 0.176 3.824 6 N -0.720 5.720 7 C 0.506 3.494 8 O -0.529 6.529 9 C 0.001 3.999 10 H 0.039 0.961 11 C -0.114 4.114 12 C -0.580 4.580 13 H 0.040 0.960 14 C -0.016 4.016 15 N -0.927 5.927 16 Si 1.108 2.892 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.283 1.283 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.115 4.115 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.411 0.589 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 12.673 -2.398 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.295 3.705 4 O -0.430 6.430 5 C 0.087 3.913 6 N -0.378 5.378 7 C 0.294 3.706 8 O -0.403 6.403 9 C -0.021 4.021 10 H 0.057 0.943 11 C -0.172 4.172 12 C -0.618 4.618 13 H 0.058 0.942 14 C -0.216 4.216 15 N -0.564 5.564 16 Si 0.932 3.068 17 H -0.193 1.193 18 H -0.216 1.216 19 H -0.209 1.209 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.153 4.153 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.248 0.752 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.164 11.641 -3.034 13.091 hybrid contribution 0.560 0.977 0.277 1.160 sum 5.724 12.618 -2.757 14.127 Atomic orbital electron populations 1.23314 0.77332 1.03746 1.02058 1.87135 1.23047 1.32155 1.81792 1.24862 0.93445 0.81296 0.70906 1.90548 1.67578 1.36876 1.47981 1.21137 0.83480 0.90600 0.96084 1.46246 1.52532 1.04148 1.34873 1.22232 0.79706 0.83626 0.85070 1.90544 1.35294 1.84258 1.30167 1.19112 0.95413 0.91897 0.95639 0.94346 1.21550 0.93296 1.01401 1.00918 1.21896 1.05960 1.05866 1.28081 0.94172 1.26881 0.94068 1.05909 0.94758 1.70878 1.42026 1.17545 1.25965 0.83048 0.75587 0.72765 0.75447 1.19311 1.21553 1.20852 1.22802 0.98928 1.01711 0.92682 1.22327 0.94254 0.97570 1.00674 1.22123 0.96761 0.98700 0.97172 1.22494 1.00048 0.91512 1.01277 0.91948 0.91356 0.88716 0.75190 0.94133 0.91223 0.92552 0.93486 0.92245 0.90857 0.89249 0.91003 0.89763 0.88740 0.89489 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 10.56 113.37 1.20 2.32 16 2 O -0.33 -14.97 6.59 -43.60 -0.29 -15.26 16 3 C 0.45 17.97 6.81 71.23 0.48 18.46 16 4 O -0.54 -21.55 15.33 21.95 0.34 -21.21 16 5 C 0.18 5.66 0.76 3.93 0.00 5.66 16 6 N -0.72 -24.72 4.96 -421.44 -2.09 -26.82 16 7 C 0.51 22.98 6.06 87.66 0.53 23.51 16 8 O -0.53 -28.23 11.67 20.68 0.24 -27.99 16 9 C 0.00 0.05 2.36 -12.28 -0.03 0.02 16 10 H 0.04 1.94 6.68 -2.39 -0.02 1.93 16 11 C -0.11 -4.18 9.11 71.98 0.66 -3.53 16 12 C -0.58 -32.53 7.55 25.60 0.19 -32.33 16 13 H 0.04 2.28 7.81 -2.91 -0.02 2.25 16 14 C -0.02 -0.95 5.46 84.65 0.46 -0.49 16 15 N -0.93 -56.34 13.62 21.45 0.29 -56.05 16 16 Si 1.11 52.70 29.91 68.60 2.05 54.75 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.12 -3.69 5.72 31.89 0.18 -3.50 16 21 C -0.11 -2.27 6.79 31.67 0.22 -2.06 16 22 C -0.11 -1.83 6.80 31.32 0.21 -1.62 16 23 C -0.12 -2.64 5.97 31.32 0.19 -2.46 16 24 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 25 H 0.07 2.33 8.13 -2.39 -0.02 2.32 16 26 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.41 11.28 7.64 -92.71 -0.71 10.57 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.96 7.43 -2.39 -0.02 1.94 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.25 15.56 6.67 -92.71 -0.62 14.94 16 32 H 0.06 2.20 6.63 -2.39 -0.02 2.18 16 33 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.09 2.17 6.79 -2.39 -0.02 2.16 16 39 H 0.09 1.81 7.77 -2.39 -0.02 1.79 16 Total: -1.00 -73.54 316.07 5.33 -68.21 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.49 Total: 20.36 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 4.30 Total: 3.99 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.80 Total: -82.86 kcal Atomic # 8 Polarization: -64.74 SS G_CDS: 0.29 Total: -64.45 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.75 kcal Total: -73.54 5.33 -68.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.770 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds