Wall clock time and date at job start Mon Mar 30 2020 04:32:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45208 * 1
3 3 C 1.34229 * 117.00036 * 2 1
4 4 O 1.20825 * 119.99756 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00040 * 180.02562 * 3 2 1
6 6 H 1.09004 * 109.58626 * 2.45876 * 5 3 2
7 7 C 1.53189 * 109.58546 * 122.88704 * 5 3 2
8 8 C 1.53043 * 109.30884 * 174.42155 * 7 5 3
9 9 C 1.53036 * 109.54018 * 298.63496 * 8 7 5
10 10 C 1.52765 * 109.38390 * 61.23947 * 9 8 7
11 11 N 1.46920 * 109.58650 * 242.17788 * 5 3 2
12 12 C 1.34782 * 120.62936 * 6.58176 * 11 5 3
13 13 O 1.21279 * 120.00338 * 5.96275 * 12 11 5
14 14 C 1.50701 * 119.99835 * 185.96501 * 12 11 5
15 15 H 1.08996 * 109.47413 * 306.73680 * 14 12 11
16 16 C 1.53001 * 109.46846 * 66.73738 * 14 12 11
17 17 C 1.50702 * 109.47132 * 186.73205 * 14 12 11
18 18 H 1.08000 * 120.00035 * 0.02562 * 17 14 12
19 19 C 1.37877 * 120.00048 * 180.02562 * 17 14 12
20 20 N 1.31517 * 120.00113 * 0.02562 * 19 17 14
21 21 Si 1.86801 * 120.00104 * 180.02562 * 19 17 14
22 22 H 1.48494 * 109.47111 * 89.99776 * 21 19 17
23 23 H 1.48500 * 109.47328 * 210.00319 * 21 19 17
24 24 H 1.48505 * 109.46900 * 329.99972 * 21 19 17
25 25 H 1.08999 * 109.46839 * 300.00040 * 1 2 3
26 26 H 1.08997 * 109.46650 * 60.00084 * 1 2 3
27 27 H 1.08997 * 109.46928 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.49899 * 294.37123 * 7 5 3
29 29 H 1.08997 * 109.49935 * 54.47670 * 7 5 3
30 30 H 1.09002 * 109.45983 * 58.65854 * 8 7 5
31 31 H 1.08996 * 109.46079 * 178.61225 * 8 7 5
32 32 H 1.09003 * 109.49626 * 181.31625 * 9 8 7
33 33 H 1.08997 * 109.49969 * 301.38430 * 9 8 7
34 34 H 1.08990 * 109.51045 * 185.70208 * 10 9 8
35 35 H 1.09008 * 109.42721 * 65.42280 * 10 9 8
36 36 H 1.09003 * 109.47338 * 307.33176 * 16 14 12
37 37 H 1.09001 * 109.47407 * 67.33821 * 16 14 12
38 38 H 1.09007 * 109.46951 * 187.33552 * 16 14 12
39 39 H 0.96993 * 120.00180 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0615 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2749 -0.0006
6 1 3.9850 0.2694 -0.0450
7 6 4.0377 2.0846 -1.2126
8 6 5.5536 2.2793 -1.1326
9 6 5.9031 3.0608 0.1359
10 6 5.4519 2.2672 1.3608
11 7 4.0249 1.9455 1.2235
12 6 3.1521 2.2647 2.1997
13 8 1.9970 1.9036 2.1223
14 6 3.6117 3.0705 3.3875
15 1 4.4811 2.5911 3.8374
16 6 3.9865 4.4821 2.9318
17 6 2.5000 3.1487 4.4019
18 1 1.5553 2.6632 4.2063
19 6 2.6889 3.8402 5.5797
20 7 3.8391 4.4319 5.8177
21 14 1.3112 3.9366 6.8375
22 1 1.4207 2.7944 7.7801
23 1 1.4168 5.2120 7.5907
24 1 0.0006 3.8800 6.1413
25 1 -0.3633 0.5138 0.8900
26 1 -0.3632 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.7876 1.5483 -2.1280
29 1 3.5457 3.0571 -1.2140
30 1 6.0438 1.3061 -1.1063
31 1 5.8951 2.8340 -2.0065
32 1 6.9806 3.2193 0.1803
33 1 5.3938 4.0244 0.1215
34 1 5.6072 2.8646 2.2590
35 1 6.0295 1.3451 1.4283
36 1 4.6962 4.4212 2.1067
37 1 3.0902 5.0076 2.6022
38 1 4.4403 5.0234 3.7621
39 1 3.9719 4.9186 6.6461
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000596900955.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:37
Heat of formation + Delta-G solvation = -118.525385 kcal
Electronic energy + Delta-G solvation = -22362.020821 eV
Core-core repulsion = 19077.032922 eV
Total energy + Delta-G solvation = -3284.987899 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.68146 -38.85094 -36.94682 -35.80221 -33.87950 -32.53705 -31.64971 -30.02141
-27.61879 -25.54354 -25.13920 -23.68814 -22.53370 -20.80112 -20.47130 -18.38131
-17.23889 -16.50368 -16.17615 -16.01779 -15.49122 -15.16723 -14.61028 -14.32533
-14.18207 -13.75055 -13.52383 -13.14015 -12.98918 -12.57352 -12.36979 -12.08436
-11.79090 -11.40965 -11.31753 -11.08389 -10.99398 -10.89684 -10.71971 -10.61739
-10.45861 -10.32337 -10.16961 -9.93493 -9.74974 -8.95987 -8.56330 -8.34284
-8.18195 -6.03242 -4.05021 2.64234 3.10888 3.34227 3.39755 3.47366
3.57873 3.69859 4.47637 4.75069 4.86867 4.91042 5.11360 5.25392
5.27839 5.31057 5.42816 5.51658 5.56140 5.70366 5.75689 5.82316
5.87358 5.91115 6.05136 6.09600 6.16685 6.36477 6.66578 6.82153
6.83779 6.94317 6.99631 7.45275 7.73506 7.92189 8.04793 8.33687
8.37353 9.02185 9.12172 9.59757 11.05099
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.018914 B = 0.007411 C = 0.005626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.037447 B = 3777.297321 C = 4975.577373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.045 3.955
2 O -0.366 6.366
3 C 0.478 3.522
4 O -0.492 6.492
5 C 0.155 3.845
6 H 0.091 0.909
7 C -0.123 4.123
8 C -0.113 4.113
9 C -0.140 4.140
10 C 0.109 3.891
11 N -0.618 5.618
12 C 0.520 3.480
13 O -0.517 6.517
14 C 0.038 3.962
15 H 0.051 0.949
16 C -0.133 4.133
17 C -0.500 4.500
18 H 0.072 0.928
19 C 0.060 3.940
20 N -0.897 5.897
21 Si 0.899 3.101
22 H -0.281 1.281
23 H -0.287 1.287
24 H -0.273 1.273
25 H 0.066 0.934
26 H 0.054 0.946
27 H 0.092 0.908
28 H 0.074 0.926
29 H 0.080 0.920
30 H 0.065 0.935
31 H 0.068 0.932
32 H 0.076 0.924
33 H 0.072 0.928
34 H 0.107 0.893
35 H 0.063 0.937
36 H 0.019 0.981
37 H 0.034 0.966
38 H 0.089 0.911
39 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.983 -6.060 -13.408 15.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 O -0.283 6.283
3 C 0.321 3.679
4 O -0.378 6.378
5 C 0.050 3.950
6 H 0.109 0.891
7 C -0.162 4.162
8 C -0.151 4.151
9 C -0.178 4.178
10 C -0.013 4.013
11 N -0.357 5.357
12 C 0.312 3.688
13 O -0.392 6.392
14 C 0.017 3.983
15 H 0.069 0.931
16 C -0.191 4.191
17 C -0.539 4.539
18 H 0.091 0.909
19 C -0.141 4.141
20 N -0.536 5.536
21 Si 0.727 3.273
22 H -0.207 1.207
23 H -0.212 1.212
24 H -0.198 1.198
25 H 0.085 0.915
26 H 0.073 0.927
27 H 0.110 0.890
28 H 0.093 0.907
29 H 0.098 0.902
30 H 0.084 0.916
31 H 0.087 0.913
32 H 0.094 0.906
33 H 0.091 0.909
34 H 0.125 0.875
35 H 0.081 0.919
36 H 0.038 0.962
37 H 0.054 0.946
38 H 0.108 0.892
39 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.169 -5.840 -13.279 15.094
hybrid contribution -0.836 0.129 0.709 1.103
sum 3.333 -5.711 -12.570 14.204
Atomic orbital electron populations
1.23090 0.76794 1.02563 1.02485 1.86374 1.23136 1.33775 1.85025
1.22700 0.90851 0.81792 0.72570 1.90647 1.66396 1.36107 1.44624
1.20523 0.88391 0.98116 0.87967 0.89125 1.21873 0.97195 1.01399
0.95693 1.21476 0.94563 1.00763 0.98293 1.21920 1.01406 0.99884
0.94575 1.21761 0.79950 0.99640 0.99949 1.48442 1.09107 1.61698
1.16492 1.22234 0.84777 0.78172 0.83616 1.90517 1.19018 1.53220
1.76428 1.18823 0.98580 0.92080 0.88807 0.93095 1.21845 0.99157
0.98315 0.99795 1.21125 0.99489 1.32799 1.00471 0.90942 1.24922
0.95892 0.95237 0.98048 1.69878 1.23320 1.35014 1.25410 0.86456
0.82550 0.77239 0.81016 1.20672 1.21246 1.19791 0.91476 0.92749
0.88969 0.90744 0.90167 0.91587 0.91315 0.90572 0.90941 0.87474
0.91877 0.96170 0.94634 0.89226 0.92973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.68 10.56 101.05 1.07 1.74 16
2 O -0.37 -6.59 10.56 -41.58 -0.44 -7.03 16
3 C 0.48 9.41 4.47 36.01 0.16 9.57 16
4 O -0.49 -11.38 14.39 -26.89 -0.39 -11.76 16
5 C 0.16 2.52 3.35 -68.76 -0.23 2.29 16
6 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
7 C -0.12 -1.59 5.31 -26.61 -0.14 -1.73 16
8 C -0.11 -1.16 5.89 -26.69 -0.16 -1.32 16
9 C -0.14 -1.63 5.88 -26.83 -0.16 -1.79 16
10 C 0.11 1.59 5.42 -3.93 -0.02 1.56 16
11 N -0.62 -11.41 2.98 -166.80 -0.50 -11.91 16
12 C 0.52 12.36 6.69 -10.98 -0.07 12.28 16
13 O -0.52 -13.93 11.28 -21.39 -0.24 -14.17 16
14 C 0.04 0.96 1.78 -92.92 -0.17 0.79 16
15 H 0.05 1.30 7.33 -51.93 -0.38 0.91 16
16 C -0.13 -3.12 8.39 37.16 0.31 -2.81 16
17 C -0.50 -14.47 8.36 -34.44 -0.29 -14.76 16
18 H 0.07 2.24 6.77 -52.49 -0.36 1.88 16
19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16
20 N -0.90 -25.21 11.40 55.43 0.63 -24.58 16
21 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16
22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16
25 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16
26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16
27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16
28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
29 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16
30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
33 H 0.07 0.96 7.39 -51.93 -0.38 0.58 16
34 H 0.11 1.72 4.62 -51.93 -0.24 1.48 16
35 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16
36 H 0.02 0.39 5.01 -51.93 -0.26 0.13 16
37 H 0.03 0.88 8.13 -51.93 -0.42 0.46 16
38 H 0.09 2.25 6.30 -51.93 -0.33 1.92 16
39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16
LS Contribution 307.93 15.07 4.64 4.64
Total: -1.00 -34.07 307.93 -6.82 -40.89
By element:
Atomic # 1 Polarization: 5.02 SS G_CDS: -5.72 Total: -0.70 kcal
Atomic # 6 Polarization: 7.21 SS G_CDS: 0.21 Total: 7.42 kcal
Atomic # 7 Polarization: -36.63 SS G_CDS: 0.14 Total: -36.49 kcal
Atomic # 8 Polarization: -31.89 SS G_CDS: -1.07 Total: -32.96 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -34.07 -6.82 -40.89 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596900955.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.631 kcal
(2) G-P(sol) polarization free energy of solvation -34.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.525 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds