Wall clock time and date at job start Mon Mar 30 2020 04:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 117.00036 * 2 1 4 4 O 1.20825 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00040 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.58626 * 2.45876 * 5 3 2 7 7 C 1.53189 * 109.58546 * 122.88704 * 5 3 2 8 8 C 1.53043 * 109.30884 * 174.42155 * 7 5 3 9 9 C 1.53036 * 109.54018 * 298.63496 * 8 7 5 10 10 C 1.52765 * 109.38390 * 61.23947 * 9 8 7 11 11 N 1.46920 * 109.58650 * 242.17788 * 5 3 2 12 12 C 1.34782 * 120.62936 * 6.58176 * 11 5 3 13 13 O 1.21279 * 120.00338 * 5.96275 * 12 11 5 14 14 C 1.50701 * 119.99835 * 185.96501 * 12 11 5 15 15 H 1.08996 * 109.47413 * 306.73680 * 14 12 11 16 16 C 1.53001 * 109.46846 * 66.73738 * 14 12 11 17 17 C 1.50702 * 109.47132 * 186.73205 * 14 12 11 18 18 H 1.08000 * 120.00035 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00048 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00113 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00104 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47111 * 89.99776 * 21 19 17 23 23 H 1.48500 * 109.47328 * 210.00319 * 21 19 17 24 24 H 1.48505 * 109.46900 * 329.99972 * 21 19 17 25 25 H 1.08999 * 109.46839 * 300.00040 * 1 2 3 26 26 H 1.08997 * 109.46650 * 60.00084 * 1 2 3 27 27 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.49899 * 294.37123 * 7 5 3 29 29 H 1.08997 * 109.49935 * 54.47670 * 7 5 3 30 30 H 1.09002 * 109.45983 * 58.65854 * 8 7 5 31 31 H 1.08996 * 109.46079 * 178.61225 * 8 7 5 32 32 H 1.09003 * 109.49626 * 181.31625 * 9 8 7 33 33 H 1.08997 * 109.49969 * 301.38430 * 9 8 7 34 34 H 1.08990 * 109.51045 * 185.70208 * 10 9 8 35 35 H 1.09008 * 109.42721 * 65.42280 * 10 9 8 36 36 H 1.09003 * 109.47338 * 307.33176 * 16 14 12 37 37 H 1.09001 * 109.47407 * 67.33821 * 16 14 12 38 38 H 1.09007 * 109.46951 * 187.33552 * 16 14 12 39 39 H 0.96993 * 120.00180 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9850 0.2694 -0.0450 7 6 4.0377 2.0846 -1.2126 8 6 5.5536 2.2793 -1.1326 9 6 5.9031 3.0608 0.1359 10 6 5.4519 2.2672 1.3608 11 7 4.0249 1.9455 1.2235 12 6 3.1521 2.2647 2.1997 13 8 1.9970 1.9036 2.1223 14 6 3.6117 3.0705 3.3875 15 1 4.4811 2.5911 3.8374 16 6 3.9865 4.4821 2.9318 17 6 2.5000 3.1487 4.4019 18 1 1.5553 2.6632 4.2063 19 6 2.6889 3.8402 5.5797 20 7 3.8391 4.4319 5.8177 21 14 1.3112 3.9366 6.8375 22 1 1.4207 2.7944 7.7801 23 1 1.4168 5.2120 7.5907 24 1 0.0006 3.8800 6.1413 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7876 1.5483 -2.1280 29 1 3.5457 3.0571 -1.2140 30 1 6.0438 1.3061 -1.1063 31 1 5.8951 2.8340 -2.0065 32 1 6.9806 3.2193 0.1803 33 1 5.3938 4.0244 0.1215 34 1 5.6072 2.8646 2.2590 35 1 6.0295 1.3451 1.4283 36 1 4.6962 4.4212 2.1067 37 1 3.0902 5.0076 2.6022 38 1 4.4403 5.0234 3.7621 39 1 3.9719 4.9186 6.6461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596900955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:37 Heat of formation + Delta-G solvation = -118.525385 kcal Electronic energy + Delta-G solvation = -22362.020821 eV Core-core repulsion = 19077.032922 eV Total energy + Delta-G solvation = -3284.987899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68146 -38.85094 -36.94682 -35.80221 -33.87950 -32.53705 -31.64971 -30.02141 -27.61879 -25.54354 -25.13920 -23.68814 -22.53370 -20.80112 -20.47130 -18.38131 -17.23889 -16.50368 -16.17615 -16.01779 -15.49122 -15.16723 -14.61028 -14.32533 -14.18207 -13.75055 -13.52383 -13.14015 -12.98918 -12.57352 -12.36979 -12.08436 -11.79090 -11.40965 -11.31753 -11.08389 -10.99398 -10.89684 -10.71971 -10.61739 -10.45861 -10.32337 -10.16961 -9.93493 -9.74974 -8.95987 -8.56330 -8.34284 -8.18195 -6.03242 -4.05021 2.64234 3.10888 3.34227 3.39755 3.47366 3.57873 3.69859 4.47637 4.75069 4.86867 4.91042 5.11360 5.25392 5.27839 5.31057 5.42816 5.51658 5.56140 5.70366 5.75689 5.82316 5.87358 5.91115 6.05136 6.09600 6.16685 6.36477 6.66578 6.82153 6.83779 6.94317 6.99631 7.45275 7.73506 7.92189 8.04793 8.33687 8.37353 9.02185 9.12172 9.59757 11.05099 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.007411 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.037447 B = 3777.297321 C = 4975.577373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.366 6.366 3 C 0.478 3.522 4 O -0.492 6.492 5 C 0.155 3.845 6 H 0.091 0.909 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.109 3.891 11 N -0.618 5.618 12 C 0.520 3.480 13 O -0.517 6.517 14 C 0.038 3.962 15 H 0.051 0.949 16 C -0.133 4.133 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.060 3.940 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -6.060 -13.408 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.283 6.283 3 C 0.321 3.679 4 O -0.378 6.378 5 C 0.050 3.950 6 H 0.109 0.891 7 C -0.162 4.162 8 C -0.151 4.151 9 C -0.178 4.178 10 C -0.013 4.013 11 N -0.357 5.357 12 C 0.312 3.688 13 O -0.392 6.392 14 C 0.017 3.983 15 H 0.069 0.931 16 C -0.191 4.191 17 C -0.539 4.539 18 H 0.091 0.909 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.169 -5.840 -13.279 15.094 hybrid contribution -0.836 0.129 0.709 1.103 sum 3.333 -5.711 -12.570 14.204 Atomic orbital electron populations 1.23090 0.76794 1.02563 1.02485 1.86374 1.23136 1.33775 1.85025 1.22700 0.90851 0.81792 0.72570 1.90647 1.66396 1.36107 1.44624 1.20523 0.88391 0.98116 0.87967 0.89125 1.21873 0.97195 1.01399 0.95693 1.21476 0.94563 1.00763 0.98293 1.21920 1.01406 0.99884 0.94575 1.21761 0.79950 0.99640 0.99949 1.48442 1.09107 1.61698 1.16492 1.22234 0.84777 0.78172 0.83616 1.90517 1.19018 1.53220 1.76428 1.18823 0.98580 0.92080 0.88807 0.93095 1.21845 0.99157 0.98315 0.99795 1.21125 0.99489 1.32799 1.00471 0.90942 1.24922 0.95892 0.95237 0.98048 1.69878 1.23320 1.35014 1.25410 0.86456 0.82550 0.77239 0.81016 1.20672 1.21246 1.19791 0.91476 0.92749 0.88969 0.90744 0.90167 0.91587 0.91315 0.90572 0.90941 0.87474 0.91877 0.96170 0.94634 0.89226 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.56 101.05 1.07 1.74 16 2 O -0.37 -6.59 10.56 -41.58 -0.44 -7.03 16 3 C 0.48 9.41 4.47 36.01 0.16 9.57 16 4 O -0.49 -11.38 14.39 -26.89 -0.39 -11.76 16 5 C 0.16 2.52 3.35 -68.76 -0.23 2.29 16 6 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -1.59 5.31 -26.61 -0.14 -1.73 16 8 C -0.11 -1.16 5.89 -26.69 -0.16 -1.32 16 9 C -0.14 -1.63 5.88 -26.83 -0.16 -1.79 16 10 C 0.11 1.59 5.42 -3.93 -0.02 1.56 16 11 N -0.62 -11.41 2.98 -166.80 -0.50 -11.91 16 12 C 0.52 12.36 6.69 -10.98 -0.07 12.28 16 13 O -0.52 -13.93 11.28 -21.39 -0.24 -14.17 16 14 C 0.04 0.96 1.78 -92.92 -0.17 0.79 16 15 H 0.05 1.30 7.33 -51.93 -0.38 0.91 16 16 C -0.13 -3.12 8.39 37.16 0.31 -2.81 16 17 C -0.50 -14.47 8.36 -34.44 -0.29 -14.76 16 18 H 0.07 2.24 6.77 -52.49 -0.36 1.88 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.90 -25.21 11.40 55.43 0.63 -24.58 16 21 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.96 7.39 -51.93 -0.38 0.58 16 34 H 0.11 1.72 4.62 -51.93 -0.24 1.48 16 35 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.02 0.39 5.01 -51.93 -0.26 0.13 16 37 H 0.03 0.88 8.13 -51.93 -0.42 0.46 16 38 H 0.09 2.25 6.30 -51.93 -0.33 1.92 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -34.07 307.93 -6.82 -40.89 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.72 Total: -0.70 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 0.21 Total: 7.42 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.14 Total: -36.49 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.07 Total: -32.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.07 -6.82 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596900955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.631 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds