Wall clock time and date at job start Mon Mar 30 2020 04:32:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45208 * 1
3 3 C 1.34229 * 117.00036 * 2 1
4 4 O 1.20825 * 119.99756 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00040 * 180.02562 * 3 2 1
6 6 H 1.09004 * 109.58626 * 2.45876 * 5 3 2
7 7 C 1.53189 * 109.58546 * 122.88704 * 5 3 2
8 8 C 1.53043 * 109.30884 * 174.42155 * 7 5 3
9 9 C 1.53036 * 109.54018 * 298.63496 * 8 7 5
10 10 C 1.52765 * 109.38390 * 61.23947 * 9 8 7
11 11 N 1.46920 * 109.58650 * 242.17788 * 5 3 2
12 12 C 1.34782 * 120.62936 * 6.58176 * 11 5 3
13 13 O 1.21279 * 120.00338 * 5.96275 * 12 11 5
14 14 C 1.50701 * 119.99835 * 185.96501 * 12 11 5
15 15 H 1.08996 * 109.47413 * 306.73680 * 14 12 11
16 16 C 1.53001 * 109.46846 * 66.73738 * 14 12 11
17 17 C 1.50702 * 109.47132 * 186.73205 * 14 12 11
18 18 H 1.08000 * 120.00035 * 0.02562 * 17 14 12
19 19 C 1.37877 * 120.00048 * 180.02562 * 17 14 12
20 20 N 1.31517 * 120.00113 * 0.02562 * 19 17 14
21 21 Si 1.86801 * 120.00104 * 180.02562 * 19 17 14
22 22 H 1.48494 * 109.47111 * 89.99776 * 21 19 17
23 23 H 1.48500 * 109.47328 * 210.00319 * 21 19 17
24 24 H 1.48505 * 109.46900 * 329.99972 * 21 19 17
25 25 H 1.08999 * 109.46839 * 300.00040 * 1 2 3
26 26 H 1.08997 * 109.46650 * 60.00084 * 1 2 3
27 27 H 1.08997 * 109.46928 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.49899 * 294.37123 * 7 5 3
29 29 H 1.08997 * 109.49935 * 54.47670 * 7 5 3
30 30 H 1.09002 * 109.45983 * 58.65854 * 8 7 5
31 31 H 1.08996 * 109.46079 * 178.61225 * 8 7 5
32 32 H 1.09003 * 109.49626 * 181.31625 * 9 8 7
33 33 H 1.08997 * 109.49969 * 301.38430 * 9 8 7
34 34 H 1.08990 * 109.51045 * 185.70208 * 10 9 8
35 35 H 1.09008 * 109.42721 * 65.42280 * 10 9 8
36 36 H 1.09003 * 109.47338 * 307.33176 * 16 14 12
37 37 H 1.09001 * 109.47407 * 67.33821 * 16 14 12
38 38 H 1.09007 * 109.46951 * 187.33552 * 16 14 12
39 39 H 0.96993 * 120.00180 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0615 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2749 -0.0006
6 1 3.9850 0.2694 -0.0450
7 6 4.0377 2.0846 -1.2126
8 6 5.5536 2.2793 -1.1326
9 6 5.9031 3.0608 0.1359
10 6 5.4519 2.2672 1.3608
11 7 4.0249 1.9455 1.2235
12 6 3.1521 2.2647 2.1997
13 8 1.9970 1.9036 2.1223
14 6 3.6117 3.0705 3.3875
15 1 4.4811 2.5911 3.8374
16 6 3.9865 4.4821 2.9318
17 6 2.5000 3.1487 4.4019
18 1 1.5553 2.6632 4.2063
19 6 2.6889 3.8402 5.5797
20 7 3.8391 4.4319 5.8177
21 14 1.3112 3.9366 6.8375
22 1 1.4207 2.7944 7.7801
23 1 1.4168 5.2120 7.5907
24 1 0.0006 3.8800 6.1413
25 1 -0.3633 0.5138 0.8900
26 1 -0.3632 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.7876 1.5483 -2.1280
29 1 3.5457 3.0571 -1.2140
30 1 6.0438 1.3061 -1.1063
31 1 5.8951 2.8340 -2.0065
32 1 6.9806 3.2193 0.1803
33 1 5.3938 4.0244 0.1215
34 1 5.6072 2.8646 2.2590
35 1 6.0295 1.3451 1.4283
36 1 4.6962 4.4212 2.1067
37 1 3.0902 5.0076 2.6022
38 1 4.4403 5.0234 3.7621
39 1 3.9719 4.9186 6.6461
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596900955.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:36
Heat of formation + Delta-G solvation = -140.246663 kcal
Electronic energy + Delta-G solvation = -22362.962726 eV
Core-core repulsion = 19077.032922 eV
Total energy + Delta-G solvation = -3285.929804 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-42.17758 -40.38704 -38.39832 -37.31851 -35.89872 -33.95789 -33.04673 -31.79288
-28.88381 -27.28073 -26.85949 -24.83604 -24.30496 -22.17027 -21.80078 -19.82463
-18.76841 -18.38097 -17.87819 -17.56659 -17.03027 -16.80238 -16.19651 -15.89744
-15.40538 -15.11033 -14.82898 -14.64673 -14.46358 -14.09006 -13.89419 -13.64097
-13.19179 -13.03778 -12.98315 -12.74700 -12.57610 -12.47268 -12.26597 -12.12170
-12.01463 -11.72188 -11.67451 -11.55291 -11.21435 -11.07008 -10.60884 -10.25144
-9.64475 -8.19703 -6.28598 1.18208 1.35605 1.36617 1.48701 1.73949
1.86765 2.17174 2.42593 3.10194 3.61575 3.81653 3.87207 4.07807
4.12703 4.18476 4.24777 4.26675 4.34270 4.51971 4.63327 4.67935
4.73502 4.83591 4.86800 4.89696 4.97115 5.08019 5.18194 5.24108
5.42138 5.45942 5.48986 5.59796 5.70233 5.87126 6.12410 6.45524
6.77173 6.88625 7.33602 7.41326 8.86946
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.018914 B = 0.007411 C = 0.005626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1480.037447 B = 3777.297321 C = 4975.577373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.368 6.368
3 C 0.471 3.529
4 O -0.536 6.536
5 C 0.149 3.851
6 H 0.125 0.875
7 C -0.118 4.118
8 C -0.105 4.105
9 C -0.136 4.136
10 C 0.098 3.902
11 N -0.611 5.611
12 C 0.513 3.487
13 O -0.562 6.562
14 C 0.037 3.963
15 H 0.048 0.952
16 C -0.115 4.115
17 C -0.532 4.532
18 H 0.040 0.960
19 C 0.024 3.976
20 N -0.907 5.907
21 Si 0.953 3.047
22 H -0.270 1.270
23 H -0.271 1.271
24 H -0.286 1.286
25 H 0.033 0.967
26 H 0.065 0.935
27 H 0.135 0.865
28 H 0.102 0.898
29 H 0.050 0.950
30 H 0.093 0.907
31 H 0.094 0.906
32 H 0.110 0.890
33 H 0.050 0.950
34 H 0.087 0.913
35 H 0.097 0.903
36 H 0.058 0.942
37 H 0.008 0.992
38 H 0.073 0.927
39 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.092 -7.059 -14.828 17.888
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 O -0.285 6.285
3 C 0.315 3.685
4 O -0.425 6.425
5 C 0.045 3.955
6 H 0.142 0.858
7 C -0.156 4.156
8 C -0.142 4.142
9 C -0.174 4.174
10 C -0.022 4.022
11 N -0.348 5.348
12 C 0.304 3.696
13 O -0.441 6.441
14 C 0.016 3.984
15 H 0.065 0.935
16 C -0.173 4.173
17 C -0.570 4.570
18 H 0.059 0.941
19 C -0.176 4.176
20 N -0.546 5.546
21 Si 0.779 3.221
22 H -0.195 1.195
23 H -0.196 1.196
24 H -0.211 1.211
25 H 0.052 0.948
26 H 0.084 0.916
27 H 0.153 0.847
28 H 0.120 0.880
29 H 0.069 0.931
30 H 0.111 0.889
31 H 0.112 0.888
32 H 0.128 0.872
33 H 0.069 0.931
34 H 0.105 0.895
35 H 0.115 0.885
36 H 0.076 0.924
37 H 0.027 0.973
38 H 0.092 0.908
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 6.346 -6.852 -14.723 17.436
hybrid contribution -1.492 0.389 1.113 1.901
sum 4.854 -6.463 -13.611 15.830
Atomic orbital electron populations
1.23321 0.75555 1.05042 1.01367 1.86369 1.24510 1.33125 1.84503
1.23533 0.92409 0.81456 0.71065 1.90616 1.67737 1.37594 1.46538
1.21009 0.86169 1.00242 0.88040 0.85776 1.21928 0.99122 0.99562
0.95013 1.21504 0.92170 1.02321 0.98250 1.21933 1.03142 0.98447
0.93858 1.22107 0.77766 1.01569 1.00783 1.48360 1.10033 1.60459
1.15972 1.21878 0.84813 0.78382 0.84530 1.90497 1.20850 1.55034
1.77700 1.18696 0.97173 0.93240 0.89279 0.93461 1.21630 0.98545
0.96798 1.00333 1.21234 0.99563 1.33741 1.02478 0.94128 1.25535
0.98036 0.94713 0.99321 1.69932 1.24086 1.34686 1.25906 0.85641
0.79373 0.78133 0.78993 1.19534 1.19586 1.21140 0.94849 0.91642
0.84669 0.87950 0.93108 0.88887 0.88797 0.87160 0.93089 0.89517
0.88520 0.92357 0.97296 0.90844 0.92441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.23 10.56 113.37 1.20 2.43 16
2 O -0.37 -13.16 10.56 -49.18 -0.52 -13.68 16
3 C 0.47 18.62 4.47 71.24 0.32 18.94 16
4 O -0.54 -25.77 14.39 29.75 0.43 -25.34 16
5 C 0.15 4.59 3.35 44.23 0.15 4.73 16
6 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16
7 C -0.12 -2.71 5.31 30.67 0.16 -2.54 16
8 C -0.11 -1.64 5.89 30.62 0.18 -1.46 16
9 C -0.14 -2.66 5.88 30.53 0.18 -2.48 16
10 C 0.10 2.60 5.42 86.22 0.47 3.07 16
11 N -0.61 -22.03 2.98 -800.02 -2.38 -24.41 16
12 C 0.51 25.07 6.69 87.66 0.59 25.65 16
13 O -0.56 -31.79 11.28 22.74 0.26 -31.53 16
14 C 0.04 1.93 1.78 -12.28 -0.02 1.91 16
15 H 0.05 2.47 7.33 -2.39 -0.02 2.45 16
16 C -0.12 -5.54 8.39 71.98 0.60 -4.94 16
17 C -0.53 -32.09 8.36 25.60 0.21 -31.88 16
18 H 0.04 2.66 6.77 -2.91 -0.02 2.64 16
19 C 0.02 1.35 5.30 84.65 0.45 1.80 16
20 N -0.91 -51.40 11.40 21.45 0.24 -51.15 16
21 Si 0.95 46.33 29.54 68.60 2.03 48.36 16
22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16
24 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16
25 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16
26 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16
27 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16
28 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16
29 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16
30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16
34 H 0.09 2.67 4.62 -2.39 -0.01 2.66 16
35 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16
36 H 0.06 2.28 5.01 -2.39 -0.01 2.27 16
37 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16
38 H 0.07 3.75 6.30 -2.38 -0.02 3.74 16
39 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16
Total: -1.00 -79.04 307.93 5.58 -73.45
By element:
Atomic # 1 Polarization: 8.03 SS G_CDS: 1.04 Total: 9.07 kcal
Atomic # 6 Polarization: 10.75 SS G_CDS: 4.49 Total: 15.23 kcal
Atomic # 7 Polarization: -73.43 SS G_CDS: -2.14 Total: -75.56 kcal
Atomic # 8 Polarization: -70.72 SS G_CDS: 0.17 Total: -70.55 kcal
Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal
Total: -79.04 5.58 -73.45 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596900955.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.794 kcal
(2) G-P(sol) polarization free energy of solvation -79.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds