Wall clock time and date at job start Mon Mar 30 2020 04:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 117.00036 * 2 1 4 4 O 1.20825 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00040 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.58626 * 2.45876 * 5 3 2 7 7 C 1.53189 * 109.58546 * 122.88704 * 5 3 2 8 8 C 1.53043 * 109.30884 * 174.42155 * 7 5 3 9 9 C 1.53036 * 109.54018 * 298.63496 * 8 7 5 10 10 C 1.52765 * 109.38390 * 61.23947 * 9 8 7 11 11 N 1.46920 * 109.58650 * 242.17788 * 5 3 2 12 12 C 1.34782 * 120.62936 * 6.58176 * 11 5 3 13 13 O 1.21279 * 120.00338 * 5.96275 * 12 11 5 14 14 C 1.50701 * 119.99835 * 185.96501 * 12 11 5 15 15 H 1.08996 * 109.47413 * 306.73680 * 14 12 11 16 16 C 1.53001 * 109.46846 * 66.73738 * 14 12 11 17 17 C 1.50702 * 109.47132 * 186.73205 * 14 12 11 18 18 H 1.08000 * 120.00035 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00048 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00113 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00104 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47111 * 89.99776 * 21 19 17 23 23 H 1.48500 * 109.47328 * 210.00319 * 21 19 17 24 24 H 1.48505 * 109.46900 * 329.99972 * 21 19 17 25 25 H 1.08999 * 109.46839 * 300.00040 * 1 2 3 26 26 H 1.08997 * 109.46650 * 60.00084 * 1 2 3 27 27 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.49899 * 294.37123 * 7 5 3 29 29 H 1.08997 * 109.49935 * 54.47670 * 7 5 3 30 30 H 1.09002 * 109.45983 * 58.65854 * 8 7 5 31 31 H 1.08996 * 109.46079 * 178.61225 * 8 7 5 32 32 H 1.09003 * 109.49626 * 181.31625 * 9 8 7 33 33 H 1.08997 * 109.49969 * 301.38430 * 9 8 7 34 34 H 1.08990 * 109.51045 * 185.70208 * 10 9 8 35 35 H 1.09008 * 109.42721 * 65.42280 * 10 9 8 36 36 H 1.09003 * 109.47338 * 307.33176 * 16 14 12 37 37 H 1.09001 * 109.47407 * 67.33821 * 16 14 12 38 38 H 1.09007 * 109.46951 * 187.33552 * 16 14 12 39 39 H 0.96993 * 120.00180 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9850 0.2694 -0.0450 7 6 4.0377 2.0846 -1.2126 8 6 5.5536 2.2793 -1.1326 9 6 5.9031 3.0608 0.1359 10 6 5.4519 2.2672 1.3608 11 7 4.0249 1.9455 1.2235 12 6 3.1521 2.2647 2.1997 13 8 1.9970 1.9036 2.1223 14 6 3.6117 3.0705 3.3875 15 1 4.4811 2.5911 3.8374 16 6 3.9865 4.4821 2.9318 17 6 2.5000 3.1487 4.4019 18 1 1.5553 2.6632 4.2063 19 6 2.6889 3.8402 5.5797 20 7 3.8391 4.4319 5.8177 21 14 1.3112 3.9366 6.8375 22 1 1.4207 2.7944 7.7801 23 1 1.4168 5.2120 7.5907 24 1 0.0006 3.8800 6.1413 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7876 1.5483 -2.1280 29 1 3.5457 3.0571 -1.2140 30 1 6.0438 1.3061 -1.1063 31 1 5.8951 2.8340 -2.0065 32 1 6.9806 3.2193 0.1803 33 1 5.3938 4.0244 0.1215 34 1 5.6072 2.8646 2.2590 35 1 6.0295 1.3451 1.4283 36 1 4.6962 4.4212 2.1067 37 1 3.0902 5.0076 2.6022 38 1 4.4403 5.0234 3.7621 39 1 3.9719 4.9186 6.6461 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596900955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:36 Heat of formation + Delta-G solvation = -140.246663 kcal Electronic energy + Delta-G solvation = -22362.962726 eV Core-core repulsion = 19077.032922 eV Total energy + Delta-G solvation = -3285.929804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17758 -40.38704 -38.39832 -37.31851 -35.89872 -33.95789 -33.04673 -31.79288 -28.88381 -27.28073 -26.85949 -24.83604 -24.30496 -22.17027 -21.80078 -19.82463 -18.76841 -18.38097 -17.87819 -17.56659 -17.03027 -16.80238 -16.19651 -15.89744 -15.40538 -15.11033 -14.82898 -14.64673 -14.46358 -14.09006 -13.89419 -13.64097 -13.19179 -13.03778 -12.98315 -12.74700 -12.57610 -12.47268 -12.26597 -12.12170 -12.01463 -11.72188 -11.67451 -11.55291 -11.21435 -11.07008 -10.60884 -10.25144 -9.64475 -8.19703 -6.28598 1.18208 1.35605 1.36617 1.48701 1.73949 1.86765 2.17174 2.42593 3.10194 3.61575 3.81653 3.87207 4.07807 4.12703 4.18476 4.24777 4.26675 4.34270 4.51971 4.63327 4.67935 4.73502 4.83591 4.86800 4.89696 4.97115 5.08019 5.18194 5.24108 5.42138 5.45942 5.48986 5.59796 5.70233 5.87126 6.12410 6.45524 6.77173 6.88625 7.33602 7.41326 8.86946 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.007411 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.037447 B = 3777.297321 C = 4975.577373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.471 3.529 4 O -0.536 6.536 5 C 0.149 3.851 6 H 0.125 0.875 7 C -0.118 4.118 8 C -0.105 4.105 9 C -0.136 4.136 10 C 0.098 3.902 11 N -0.611 5.611 12 C 0.513 3.487 13 O -0.562 6.562 14 C 0.037 3.963 15 H 0.048 0.952 16 C -0.115 4.115 17 C -0.532 4.532 18 H 0.040 0.960 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.953 3.047 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.286 1.286 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.008 0.992 38 H 0.073 0.927 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -7.059 -14.828 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.285 6.285 3 C 0.315 3.685 4 O -0.425 6.425 5 C 0.045 3.955 6 H 0.142 0.858 7 C -0.156 4.156 8 C -0.142 4.142 9 C -0.174 4.174 10 C -0.022 4.022 11 N -0.348 5.348 12 C 0.304 3.696 13 O -0.441 6.441 14 C 0.016 3.984 15 H 0.065 0.935 16 C -0.173 4.173 17 C -0.570 4.570 18 H 0.059 0.941 19 C -0.176 4.176 20 N -0.546 5.546 21 Si 0.779 3.221 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.211 1.211 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.092 0.908 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.346 -6.852 -14.723 17.436 hybrid contribution -1.492 0.389 1.113 1.901 sum 4.854 -6.463 -13.611 15.830 Atomic orbital electron populations 1.23321 0.75555 1.05042 1.01367 1.86369 1.24510 1.33125 1.84503 1.23533 0.92409 0.81456 0.71065 1.90616 1.67737 1.37594 1.46538 1.21009 0.86169 1.00242 0.88040 0.85776 1.21928 0.99122 0.99562 0.95013 1.21504 0.92170 1.02321 0.98250 1.21933 1.03142 0.98447 0.93858 1.22107 0.77766 1.01569 1.00783 1.48360 1.10033 1.60459 1.15972 1.21878 0.84813 0.78382 0.84530 1.90497 1.20850 1.55034 1.77700 1.18696 0.97173 0.93240 0.89279 0.93461 1.21630 0.98545 0.96798 1.00333 1.21234 0.99563 1.33741 1.02478 0.94128 1.25535 0.98036 0.94713 0.99321 1.69932 1.24086 1.34686 1.25906 0.85641 0.79373 0.78133 0.78993 1.19534 1.19586 1.21140 0.94849 0.91642 0.84669 0.87950 0.93108 0.88887 0.88797 0.87160 0.93089 0.89517 0.88520 0.92357 0.97296 0.90844 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.56 113.37 1.20 2.43 16 2 O -0.37 -13.16 10.56 -49.18 -0.52 -13.68 16 3 C 0.47 18.62 4.47 71.24 0.32 18.94 16 4 O -0.54 -25.77 14.39 29.75 0.43 -25.34 16 5 C 0.15 4.59 3.35 44.23 0.15 4.73 16 6 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 7 C -0.12 -2.71 5.31 30.67 0.16 -2.54 16 8 C -0.11 -1.64 5.89 30.62 0.18 -1.46 16 9 C -0.14 -2.66 5.88 30.53 0.18 -2.48 16 10 C 0.10 2.60 5.42 86.22 0.47 3.07 16 11 N -0.61 -22.03 2.98 -800.02 -2.38 -24.41 16 12 C 0.51 25.07 6.69 87.66 0.59 25.65 16 13 O -0.56 -31.79 11.28 22.74 0.26 -31.53 16 14 C 0.04 1.93 1.78 -12.28 -0.02 1.91 16 15 H 0.05 2.47 7.33 -2.39 -0.02 2.45 16 16 C -0.12 -5.54 8.39 71.98 0.60 -4.94 16 17 C -0.53 -32.09 8.36 25.60 0.21 -31.88 16 18 H 0.04 2.66 6.77 -2.91 -0.02 2.64 16 19 C 0.02 1.35 5.30 84.65 0.45 1.80 16 20 N -0.91 -51.40 11.40 21.45 0.24 -51.15 16 21 Si 0.95 46.33 29.54 68.60 2.03 48.36 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 25 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 27 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.48 7.92 -2.39 -0.02 1.46 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16 34 H 0.09 2.67 4.62 -2.39 -0.01 2.66 16 35 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 2.28 5.01 -2.39 -0.01 2.27 16 37 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 38 H 0.07 3.75 6.30 -2.38 -0.02 3.74 16 39 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -79.04 307.93 5.58 -73.45 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.04 Total: 9.07 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 4.49 Total: 15.23 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.14 Total: -75.56 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: 0.17 Total: -70.55 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.04 5.58 -73.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596900955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.794 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds