Wall clock time and date at job start Mon Mar 30 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00633 * 2 1 4 4 H 1.08998 * 109.47069 * 30.00085 * 3 2 1 5 5 C 1.50700 * 109.46998 * 270.00192 * 3 2 1 6 6 O 1.21293 * 119.99864 * 124.04720 * 5 3 2 7 7 N 1.34773 * 120.00025 * 304.04890 * 5 3 2 8 8 C 1.37106 * 119.99973 * 185.55214 * 7 5 3 9 9 H 1.07996 * 119.99546 * 328.56483 * 8 7 5 10 10 C 1.38945 * 120.00185 * 148.29269 * 8 7 5 11 11 N 1.31407 * 120.00040 * 164.62444 * 10 8 7 12 12 Si 1.86799 * 120.00046 * 344.62573 * 10 8 7 13 13 H 1.48500 * 109.47210 * 87.88648 * 12 10 8 14 14 H 1.48499 * 109.47685 * 207.89247 * 12 10 8 15 15 H 1.48509 * 109.47314 * 327.89060 * 12 10 8 16 16 C 1.46501 * 120.00296 * 5.54927 * 7 5 3 17 17 C 1.52999 * 117.49973 * 137.46396 * 16 7 5 18 18 C 1.52997 * 117.49821 * 68.80235 * 16 7 5 19 19 C 1.52997 * 109.47357 * 150.00066 * 3 2 1 20 20 H 1.09003 * 110.80567 * 68.63070 * 19 3 2 21 21 C 1.54812 * 110.90899 * 305.00437 * 19 3 2 22 22 C 1.54090 * 104.18770 * 220.92122 * 21 19 3 23 23 O 1.43742 * 107.29854 * 357.96713 * 22 21 19 24 24 C 1.44389 * 106.97109 * 26.51527 * 23 22 21 25 25 H 1.08997 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46719 * 300.00489 * 1 2 3 27 27 H 1.09000 * 109.46675 * 59.99392 * 1 2 3 28 28 H 0.97003 * 119.99708 * 179.97438 * 11 10 8 29 29 H 1.08996 * 115.54429 * 283.14020 * 16 7 5 30 30 H 1.08996 * 117.49924 * 0.02562 * 17 16 7 31 31 H 1.08997 * 117.49588 * 145.02295 * 17 16 7 32 32 H 1.08997 * 117.50287 * 214.98208 * 18 16 7 33 33 H 1.09008 * 117.49826 * 359.97438 * 18 16 7 34 34 H 1.08999 * 110.48722 * 339.60216 * 21 19 3 35 35 H 1.09003 * 110.48376 * 102.10877 * 21 19 3 36 36 H 1.09000 * 109.87991 * 117.39828 * 22 21 19 37 37 H 1.09009 * 109.87805 * 238.54633 * 22 21 19 38 38 H 1.08994 * 110.61625 * 201.44022 * 24 23 22 39 39 H 1.08998 * 110.61445 * 78.44209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 1 1.3452 1.9993 0.5138 5 6 2.2147 1.7642 -1.4208 6 8 1.7274 2.8095 -1.7965 7 7 2.9388 1.0131 -2.2740 8 6 3.2208 1.4827 -3.5309 9 1 2.5216 2.1348 -4.0331 10 6 4.4086 1.1241 -4.1562 11 7 4.5531 1.3111 -5.4489 12 14 5.8001 0.3760 -3.1595 13 1 5.6264 -1.0974 -3.0951 14 1 7.0987 0.6936 -3.8060 15 1 5.7814 0.9371 -1.7846 16 6 3.4247 -0.3050 -1.8585 17 6 3.3169 -1.4485 -2.8692 18 6 2.3853 -1.4092 -1.6553 19 6 3.3590 1.2631 0.7212 20 1 4.0892 0.6960 0.1438 21 6 3.2056 0.6768 2.1458 22 6 4.1158 1.5624 3.0187 23 8 4.7505 2.5128 2.1470 24 6 3.8752 2.6950 1.0132 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 5.3826 1.0611 -5.8853 29 1 4.2893 -0.2994 -1.1949 30 1 2.8850 -1.2201 -3.8435 31 1 4.1106 -2.1956 -2.8703 32 1 2.5664 -2.1304 -0.8583 33 1 1.3399 -1.1548 -1.8303 34 1 2.1702 0.7491 2.4786 35 1 3.5416 -0.3598 2.1699 36 1 3.5183 2.0855 3.7653 37 1 4.8706 0.9478 3.5094 38 1 4.4293 3.0848 0.1594 39 1 3.0478 3.3566 1.2696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:31 Heat of formation + Delta-G solvation = -68.907520 kcal Electronic energy + Delta-G solvation = -22835.782989 eV Core-core repulsion = 19552.946682 eV Total energy + Delta-G solvation = -3282.836307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13697 -38.66477 -37.02779 -36.38288 -33.05066 -32.74012 -31.44699 -29.68222 -27.23632 -25.80031 -24.27046 -22.73127 -22.24764 -21.65881 -20.49328 -19.20781 -17.11711 -16.81338 -16.55086 -16.24375 -15.61829 -15.42831 -14.82818 -14.64625 -14.35955 -13.87239 -13.37673 -13.29768 -13.22331 -13.05941 -12.32200 -12.19008 -11.67186 -11.52473 -11.31602 -11.25223 -11.19020 -10.97066 -10.87839 -10.70956 -10.36385 -10.13065 -9.88770 -9.62387 -9.52466 -9.34586 -9.04129 -8.29136 -7.79196 -6.35567 -3.94433 3.08997 3.25174 3.26343 3.43839 3.89518 4.08205 4.19911 4.31862 4.48841 4.66641 4.92022 4.99049 5.11340 5.18378 5.30328 5.37447 5.40509 5.53393 5.55406 5.59918 5.63687 5.74912 5.75967 5.83755 5.85571 5.90128 5.96549 6.13415 6.27018 6.28155 6.42833 6.69704 6.87623 6.93247 7.24386 7.56341 8.23513 8.50367 8.93168 9.35726 9.73403 10.75736 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.009192 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.548285 B = 3045.538349 C = 3504.750648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.092 3.908 4 H 0.081 0.919 5 C 0.445 3.555 6 O -0.569 6.569 7 N -0.423 5.423 8 C -0.319 4.319 9 H 0.109 0.891 10 C 0.068 3.932 11 N -0.869 5.869 12 Si 0.878 3.122 13 H -0.260 1.260 14 H -0.295 1.295 15 H -0.270 1.270 16 C 0.039 3.961 17 C -0.178 4.178 18 C -0.139 4.139 19 C -0.122 4.122 20 H 0.100 0.900 21 C -0.139 4.139 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.056 3.944 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.274 0.726 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -6.493 14.276 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.278 6.278 3 C 0.031 3.969 4 H 0.099 0.901 5 C 0.233 3.767 6 O -0.452 6.452 7 N -0.143 5.143 8 C -0.446 4.446 9 H 0.126 0.874 10 C -0.138 4.138 11 N -0.506 5.506 12 Si 0.706 3.294 13 H -0.185 1.185 14 H -0.222 1.222 15 H -0.196 1.196 16 C -0.065 4.065 17 C -0.215 4.215 18 C -0.177 4.177 19 C -0.141 4.141 20 H 0.118 0.882 21 C -0.177 4.177 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.021 4.021 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.978 -6.053 13.931 15.478 hybrid contribution 0.497 -0.285 0.303 0.648 sum -2.481 -6.337 14.234 15.778 Atomic orbital electron populations 1.22782 0.81748 1.02348 1.00156 1.88112 1.19061 1.25836 1.94772 1.22337 0.94372 0.85778 0.94429 0.90126 1.20528 0.84517 0.84967 0.86716 1.90581 1.51926 1.25030 1.77711 1.43217 1.46879 1.11447 1.12781 1.19143 1.04804 1.30935 0.89685 0.87372 1.25243 0.97308 0.96084 0.95182 1.69713 1.26810 1.45733 1.08356 0.87019 0.81403 0.80501 0.80497 1.18500 1.22189 1.19567 1.21762 0.99924 0.82112 1.02736 1.23434 1.02656 0.98952 0.96470 1.23141 0.96664 0.99507 0.98361 1.22936 0.97007 0.97848 0.96294 0.88176 1.22847 1.00539 1.00410 0.93875 1.23184 0.96123 0.90770 0.93198 1.88876 1.44474 1.62631 1.33692 1.23556 0.94125 0.95240 0.89170 0.89679 0.94349 0.93787 0.91622 0.88271 0.87171 0.89000 0.89238 0.88607 0.90594 0.90164 0.92620 0.90107 0.88223 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.97 101.05 1.01 1.34 16 2 O -0.36 -5.49 5.49 -35.23 -0.19 -5.68 16 3 C 0.09 1.60 1.67 -27.88 -0.05 1.55 16 4 H 0.08 1.32 7.60 -51.93 -0.39 0.92 16 5 C 0.45 10.29 6.44 -10.99 -0.07 10.22 16 6 O -0.57 -15.38 16.86 5.55 0.09 -15.29 16 7 N -0.42 -10.20 2.64 -107.73 -0.28 -10.49 16 8 C -0.32 -9.02 9.05 -14.93 -0.14 -9.15 16 9 H 0.11 3.48 7.74 -52.49 -0.41 3.07 16 10 C 0.07 1.86 4.90 -17.47 -0.09 1.78 16 11 N -0.87 -25.18 13.96 55.50 0.77 -24.40 16 12 Si 0.88 20.68 23.79 -169.99 -4.04 16.64 16 13 H -0.26 -5.53 5.17 56.52 0.29 -5.24 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.27 -6.33 6.67 56.52 0.38 -5.96 16 16 C 0.04 0.80 1.79 -67.93 -0.12 0.68 16 17 C -0.18 -3.42 7.43 -26.69 -0.20 -3.62 16 18 C -0.14 -2.33 7.46 -26.69 -0.20 -2.53 16 19 C -0.12 -1.97 2.66 -88.61 -0.24 -2.20 16 20 H 0.10 1.80 5.11 -51.93 -0.27 1.54 16 21 C -0.14 -1.71 6.19 -25.21 -0.16 -1.87 16 22 C 0.04 0.54 7.70 37.73 0.29 0.83 16 23 O -0.38 -6.07 11.52 -35.23 -0.41 -6.48 16 24 C 0.06 0.92 6.91 38.21 0.26 1.19 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.42 8.09 -51.92 -0.42 0.00 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.10 1.99 4.32 -51.93 -0.22 1.77 16 30 H 0.11 2.38 7.71 -51.93 -0.40 1.98 16 31 H 0.09 1.62 7.03 -51.93 -0.37 1.25 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.10 1.65 6.58 -51.92 -0.34 1.30 16 34 H 0.08 0.84 7.86 -51.93 -0.41 0.44 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -31.84 300.66 -5.08 -36.92 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.87 Total: 6.04 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.31 Total: -1.79 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.49 Total: -34.89 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.51 Total: -27.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.04 Total: 16.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.84 -5.08 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.990 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds