Wall clock time and date at job start Mon Mar 30 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00633 * 2 1 4 4 H 1.08998 * 109.47069 * 30.00085 * 3 2 1 5 5 C 1.50700 * 109.46998 * 270.00192 * 3 2 1 6 6 O 1.21293 * 119.99864 * 124.04720 * 5 3 2 7 7 N 1.34773 * 120.00025 * 304.04890 * 5 3 2 8 8 C 1.37106 * 119.99973 * 185.55214 * 7 5 3 9 9 H 1.07996 * 119.99546 * 328.56483 * 8 7 5 10 10 C 1.38945 * 120.00185 * 148.29269 * 8 7 5 11 11 N 1.31407 * 120.00040 * 164.62444 * 10 8 7 12 12 Si 1.86799 * 120.00046 * 344.62573 * 10 8 7 13 13 H 1.48500 * 109.47210 * 87.88648 * 12 10 8 14 14 H 1.48499 * 109.47685 * 207.89247 * 12 10 8 15 15 H 1.48509 * 109.47314 * 327.89060 * 12 10 8 16 16 C 1.46501 * 120.00296 * 5.54927 * 7 5 3 17 17 C 1.52999 * 117.49973 * 137.46396 * 16 7 5 18 18 C 1.52997 * 117.49821 * 68.80235 * 16 7 5 19 19 C 1.52997 * 109.47357 * 150.00066 * 3 2 1 20 20 H 1.09003 * 110.80567 * 68.63070 * 19 3 2 21 21 C 1.54812 * 110.90899 * 305.00437 * 19 3 2 22 22 C 1.54090 * 104.18770 * 220.92122 * 21 19 3 23 23 O 1.43742 * 107.29854 * 357.96713 * 22 21 19 24 24 C 1.44389 * 106.97109 * 26.51527 * 23 22 21 25 25 H 1.08997 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46719 * 300.00489 * 1 2 3 27 27 H 1.09000 * 109.46675 * 59.99392 * 1 2 3 28 28 H 0.97003 * 119.99708 * 179.97438 * 11 10 8 29 29 H 1.08996 * 115.54429 * 283.14020 * 16 7 5 30 30 H 1.08996 * 117.49924 * 0.02562 * 17 16 7 31 31 H 1.08997 * 117.49588 * 145.02295 * 17 16 7 32 32 H 1.08997 * 117.50287 * 214.98208 * 18 16 7 33 33 H 1.09008 * 117.49826 * 359.97438 * 18 16 7 34 34 H 1.08999 * 110.48722 * 339.60216 * 21 19 3 35 35 H 1.09003 * 110.48376 * 102.10877 * 21 19 3 36 36 H 1.09000 * 109.87991 * 117.39828 * 22 21 19 37 37 H 1.09009 * 109.87805 * 238.54633 * 22 21 19 38 38 H 1.08994 * 110.61625 * 201.44022 * 24 23 22 39 39 H 1.08998 * 110.61445 * 78.44209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 1 1.3452 1.9993 0.5138 5 6 2.2147 1.7642 -1.4208 6 8 1.7274 2.8095 -1.7965 7 7 2.9388 1.0131 -2.2740 8 6 3.2208 1.4827 -3.5309 9 1 2.5216 2.1348 -4.0331 10 6 4.4086 1.1241 -4.1562 11 7 4.5531 1.3111 -5.4489 12 14 5.8001 0.3760 -3.1595 13 1 5.6264 -1.0974 -3.0951 14 1 7.0987 0.6936 -3.8060 15 1 5.7814 0.9371 -1.7846 16 6 3.4247 -0.3050 -1.8585 17 6 3.3169 -1.4485 -2.8692 18 6 2.3853 -1.4092 -1.6553 19 6 3.3590 1.2631 0.7212 20 1 4.0892 0.6960 0.1438 21 6 3.2056 0.6768 2.1458 22 6 4.1158 1.5624 3.0187 23 8 4.7505 2.5128 2.1470 24 6 3.8752 2.6950 1.0132 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 5.3826 1.0611 -5.8853 29 1 4.2893 -0.2994 -1.1949 30 1 2.8850 -1.2201 -3.8435 31 1 4.1106 -2.1956 -2.8703 32 1 2.5664 -2.1304 -0.8583 33 1 1.3399 -1.1548 -1.8303 34 1 2.1702 0.7491 2.4786 35 1 3.5416 -0.3598 2.1699 36 1 3.5183 2.0855 3.7653 37 1 4.8706 0.9478 3.5094 38 1 4.4293 3.0848 0.1594 39 1 3.0478 3.3566 1.2696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:30 Heat of formation + Delta-G solvation = -92.989599 kcal Electronic energy + Delta-G solvation = -22836.827266 eV Core-core repulsion = 19552.946682 eV Total energy + Delta-G solvation = -3283.880584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62168 -40.01737 -38.37016 -38.13981 -35.00838 -34.02433 -33.34414 -30.78516 -28.56070 -27.29636 -25.91575 -24.13777 -23.55103 -23.12824 -21.73339 -20.95970 -18.99413 -18.27916 -17.92237 -17.61250 -17.21605 -16.71772 -16.34575 -15.95665 -15.64443 -15.36373 -15.06151 -14.91419 -14.69006 -14.33163 -14.21426 -13.62333 -13.12420 -12.99667 -12.80513 -12.66180 -12.40915 -12.28716 -12.24143 -12.15518 -11.89642 -11.65330 -11.53031 -11.16099 -11.00389 -10.81612 -10.68783 -10.00028 -9.74093 -8.50233 -6.14547 1.22875 1.30822 1.41050 1.71150 2.21027 2.58629 2.59944 2.85285 2.99089 3.10541 3.45665 3.75452 3.87225 3.88528 4.00178 4.11460 4.16745 4.26175 4.27772 4.34148 4.46181 4.55840 4.64838 4.71242 4.81388 4.87351 4.87786 4.90641 4.98280 5.12750 5.20002 5.24061 5.41748 5.52739 5.84571 5.96417 6.01922 6.53768 6.88244 7.31118 7.79537 8.66116 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.009192 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.548285 B = 3045.538349 C = 3504.750648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.354 6.354 3 C 0.113 3.887 4 H 0.094 0.906 5 C 0.437 3.563 6 O -0.624 6.624 7 N -0.433 5.433 8 C -0.336 4.336 9 H 0.044 0.956 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.941 3.059 13 H -0.213 1.213 14 H -0.301 1.301 15 H -0.268 1.268 16 C 0.012 3.988 17 C -0.188 4.188 18 C -0.098 4.098 19 C -0.122 4.122 20 H 0.084 0.916 21 C -0.125 4.125 22 C 0.037 3.963 23 O -0.398 6.398 24 C 0.054 3.946 25 H 0.118 0.882 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 -9.745 18.191 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.272 6.272 3 C 0.051 3.949 4 H 0.111 0.889 5 C 0.227 3.773 6 O -0.510 6.510 7 N -0.153 5.153 8 C -0.463 4.463 9 H 0.062 0.938 10 C -0.177 4.177 11 N -0.554 5.554 12 Si 0.764 3.236 13 H -0.136 1.136 14 H -0.229 1.229 15 H -0.194 1.194 16 C -0.091 4.091 17 C -0.225 4.225 18 C -0.136 4.136 19 C -0.141 4.141 20 H 0.102 0.898 21 C -0.162 4.162 22 C -0.039 4.039 23 O -0.317 6.317 24 C -0.023 4.023 25 H 0.136 0.864 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.660 -9.350 17.862 20.336 hybrid contribution 0.251 0.808 -0.951 1.273 sum -2.410 -8.542 16.911 19.099 Atomic orbital electron populations 1.23037 0.80104 1.04500 1.00010 1.88079 1.20689 1.24015 1.94424 1.21986 0.95933 0.87092 0.89862 0.88854 1.21787 0.82462 0.84105 0.88968 1.90539 1.53663 1.27473 1.79355 1.43273 1.47139 1.13444 1.11406 1.18708 1.04529 1.31295 0.91815 0.93809 1.25992 0.99373 0.96367 0.95918 1.69835 1.27783 1.47507 1.10311 0.86054 0.76759 0.82389 0.78359 1.13563 1.22879 1.19354 1.22028 1.02354 0.80552 1.04207 1.23442 1.04519 0.98957 0.95572 1.23231 0.95348 0.97294 0.97707 1.22870 0.95284 0.97467 0.98493 0.89783 1.22832 1.01873 1.01064 0.90473 1.23485 0.97006 0.90535 0.92888 1.88856 1.45069 1.63930 1.33864 1.23434 0.93996 0.96052 0.88781 0.86381 0.91815 0.96659 0.91182 0.86884 0.90658 0.86368 0.84765 0.89196 0.88668 0.88215 0.90647 0.88061 0.91557 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.97 113.37 1.13 1.55 16 2 O -0.35 -9.47 5.49 -148.98 -0.82 -10.29 16 3 C 0.11 3.72 1.67 29.85 0.05 3.77 16 4 H 0.09 2.86 7.60 -2.39 -0.02 2.84 16 5 C 0.44 20.76 6.44 87.66 0.56 21.33 16 6 O -0.62 -35.80 16.86 -3.07 -0.05 -35.85 16 7 N -0.43 -21.39 2.64 -613.14 -1.62 -23.01 16 8 C -0.34 -20.25 9.05 84.04 0.76 -19.48 16 9 H 0.04 3.12 7.74 -2.91 -0.02 3.10 16 10 C 0.03 1.46 4.90 84.93 0.42 1.88 16 11 N -0.92 -55.77 13.96 21.66 0.30 -55.46 16 12 Si 0.94 42.63 23.79 68.60 1.63 44.26 16 13 H -0.21 -8.03 5.17 99.48 0.51 -7.51 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 15 H -0.27 -12.01 6.67 99.48 0.66 -11.34 16 16 C 0.01 0.46 1.79 44.99 0.08 0.54 16 17 C -0.19 -6.75 7.43 30.62 0.23 -6.53 16 18 C -0.10 -2.92 7.46 30.62 0.23 -2.69 16 19 C -0.12 -3.62 2.66 -9.49 -0.03 -3.65 16 20 H 0.08 2.80 5.11 -2.39 -0.01 2.79 16 21 C -0.12 -2.46 6.19 31.58 0.20 -2.26 16 22 C 0.04 0.74 7.70 72.35 0.56 1.30 16 23 O -0.40 -11.95 11.52 -148.98 -1.72 -13.67 16 24 C 0.05 1.76 6.91 72.66 0.50 2.26 16 25 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.10 8.09 -2.38 -0.02 1.08 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.11 4.13 4.32 -2.39 -0.01 4.12 16 30 H 0.07 3.27 7.71 -2.39 -0.02 3.25 16 31 H 0.12 3.61 7.03 -2.39 -0.02 3.60 16 32 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.09 2.82 6.58 -2.38 -0.02 2.81 16 34 H 0.09 1.54 7.86 -2.39 -0.02 1.53 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 Total: -1.00 -77.05 300.66 3.22 -73.83 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.81 Total: 22.18 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.69 Total: -1.98 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -1.32 Total: -78.48 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -2.59 Total: -59.81 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.63 Total: 44.26 kcal Total: -77.05 3.22 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.162 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds