Wall clock time and date at job start Mon Mar 30 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99885 * 2 1 4 4 H 1.09005 * 109.46672 * 0.95484 * 3 2 1 5 5 C 1.50693 * 109.47195 * 120.95270 * 3 2 1 6 6 O 1.21293 * 119.99756 * 17.10424 * 5 3 2 7 7 N 1.34779 * 120.00302 * 197.09943 * 5 3 2 8 8 C 1.37098 * 119.99932 * 175.67429 * 7 5 3 9 9 H 1.08005 * 119.99548 * 226.32275 * 8 7 5 10 10 C 1.38941 * 120.00282 * 46.32329 * 8 7 5 11 11 N 1.31413 * 120.00176 * 11.79329 * 10 8 7 12 12 Si 1.86798 * 120.00153 * 191.79450 * 10 8 7 13 13 H 1.48499 * 109.47152 * 59.99640 * 12 10 8 14 14 H 1.48499 * 109.47231 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47163 * 300.00161 * 12 10 8 16 16 C 1.46498 * 119.99722 * 355.67523 * 7 5 3 17 17 C 1.52992 * 117.49744 * 191.93057 * 16 7 5 18 18 C 1.53004 * 117.49970 * 123.26824 * 16 7 5 19 19 C 1.52998 * 109.46968 * 240.95635 * 3 2 1 20 20 H 1.09004 * 110.80283 * 182.75703 * 19 3 2 21 21 C 1.54817 * 110.93892 * 59.10858 * 19 3 2 22 22 C 1.54104 * 104.18493 * 220.90722 * 21 19 3 23 23 O 1.43739 * 107.29501 * 357.96995 * 22 21 19 24 24 C 1.44379 * 106.97550 * 26.51448 * 23 22 21 25 25 H 1.08996 * 109.47087 * 304.13351 * 1 2 3 26 26 H 1.08991 * 109.47348 * 64.13472 * 1 2 3 27 27 H 1.09000 * 109.47072 * 184.13912 * 1 2 3 28 28 H 0.96998 * 120.00170 * 184.98060 * 11 10 8 29 29 H 1.09003 * 115.55145 * 337.60172 * 16 7 5 30 30 H 1.09004 * 117.50229 * 0.02562 * 17 16 7 31 31 H 1.09001 * 117.50025 * 145.01961 * 17 16 7 32 32 H 1.08995 * 117.49821 * 214.97680 * 18 16 7 33 33 H 1.08995 * 117.49547 * 359.97438 * 18 16 7 34 34 H 1.08994 * 110.48690 * 339.58285 * 21 19 3 35 35 H 1.08998 * 110.48325 * 102.09828 * 21 19 3 36 36 H 1.08998 * 109.87529 * 117.39432 * 22 21 19 37 37 H 1.09005 * 109.87232 * 238.39437 * 22 21 19 38 38 H 1.08997 * 110.61572 * 201.43678 * 24 23 22 39 39 H 1.09001 * 110.62019 * 78.44240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2192 2.0553 0.0171 5 6 2.8821 1.4672 1.2184 6 8 3.2473 0.4897 1.8368 7 7 3.2562 2.6979 1.6209 8 6 3.9747 2.8516 2.7784 9 1 3.6932 3.6122 3.4917 10 6 5.0649 2.0290 3.0339 11 7 5.5508 1.2669 2.0800 12 14 5.8398 2.0062 4.7334 13 1 4.8275 1.5813 5.7334 14 1 6.9787 1.0533 4.7454 15 1 6.3296 3.3666 5.0724 16 6 2.8951 3.8712 0.8216 17 6 3.5743 5.1978 1.1673 18 6 2.0993 4.9798 1.5135 19 6 2.8574 1.4865 -1.2611 20 1 3.3507 2.4585 -1.2598 21 6 1.9978 1.3049 -2.5358 22 6 2.9008 0.4974 -3.4883 23 8 4.1578 0.2991 -2.8200 24 6 3.8922 0.3412 -1.4014 25 1 -0.3633 0.5766 0.8506 26 1 -0.3633 0.4483 -0.9246 27 1 -0.3633 -1.0250 0.0742 28 1 6.2645 0.6400 2.2762 29 1 2.6775 3.6759 -0.2285 30 1 4.2903 5.1975 1.9893 31 1 3.8033 5.8754 0.3448 32 1 1.3585 5.5139 0.9186 33 1 1.8441 4.8358 2.5634 34 1 1.0895 0.7476 -2.3072 35 1 1.7509 2.2735 -2.9705 36 1 2.4410 -0.4665 -3.7066 37 1 3.0540 1.0529 -4.4136 38 1 4.8013 0.5753 -0.8475 39 1 3.4674 -0.6036 -1.0623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:33 Heat of formation + Delta-G solvation = -75.448383 kcal Electronic energy + Delta-G solvation = -22510.836866 eV Core-core repulsion = 19227.716926 eV Total energy + Delta-G solvation = -3283.119940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75935 -38.20475 -37.04758 -35.75711 -32.74918 -32.39516 -30.83575 -29.41260 -26.83900 -25.95525 -24.15836 -22.37737 -21.72157 -21.28689 -20.15555 -19.52024 -16.87141 -16.36329 -16.08277 -15.92431 -15.61146 -14.63866 -14.50751 -14.37666 -14.13324 -13.70613 -13.58778 -13.15338 -12.90294 -12.57710 -12.36993 -11.68245 -11.44361 -11.16276 -11.13760 -11.00915 -10.91220 -10.81244 -10.63964 -10.35731 -10.27107 -10.18613 -10.00505 -9.78201 -9.49966 -9.20169 -8.67181 -7.82020 -6.99470 -6.02795 -3.90858 3.31802 3.38766 3.39879 3.92608 4.02751 4.33982 4.41396 4.73597 4.79611 4.93862 5.06191 5.26791 5.27267 5.35931 5.46833 5.47536 5.54069 5.67275 5.72237 5.75907 5.80015 5.87025 5.92879 5.95565 6.07341 6.11107 6.19455 6.21333 6.42133 6.59558 6.68930 6.72409 6.93605 7.29496 7.48441 7.63868 8.30272 9.07274 9.16810 9.65068 10.28904 11.01205 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.007653 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.741504 B = 3657.994971 C = 3970.757192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.085 3.915 4 H 0.071 0.929 5 C 0.473 3.527 6 O -0.500 6.500 7 N -0.427 5.427 8 C -0.345 4.345 9 H 0.076 0.924 10 C 0.068 3.932 11 N -0.825 5.825 12 Si 0.909 3.091 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.067 3.933 17 C -0.174 4.174 18 C -0.208 4.208 19 C -0.123 4.123 20 H 0.097 0.903 21 C -0.153 4.153 22 C 0.051 3.949 23 O -0.385 6.385 24 C 0.064 3.936 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.264 0.736 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 3.335 -8.162 12.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.023 3.977 4 H 0.089 0.911 5 C 0.259 3.741 6 O -0.374 6.374 7 N -0.151 5.151 8 C -0.472 4.472 9 H 0.094 0.906 10 C -0.143 4.143 11 N -0.459 5.459 12 Si 0.737 3.263 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.203 1.203 16 C -0.040 4.040 17 C -0.212 4.212 18 C -0.247 4.247 19 C -0.142 4.142 20 H 0.115 0.885 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.304 6.304 24 C -0.012 4.012 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.916 2.450 -7.999 11.517 hybrid contribution -0.119 0.380 0.830 0.921 sum -8.035 2.830 -7.169 11.134 Atomic orbital electron populations 1.22852 0.82136 1.02428 0.99319 1.87991 1.18385 1.26287 1.94651 1.22019 0.95769 0.85291 0.94655 0.91060 1.19903 0.83541 0.84398 0.86306 1.90561 1.53547 1.37323 1.55940 1.42717 1.49164 1.01797 1.21381 1.18808 1.09223 1.22992 0.96172 0.90643 1.25256 0.94736 0.96778 0.97488 1.69826 1.23836 1.20554 1.31640 0.86326 0.78613 0.77597 0.83805 1.20182 1.21143 1.20347 1.21887 1.02907 0.84752 0.94406 1.23082 0.95411 0.98908 1.03795 1.23301 0.94397 1.05057 1.01986 1.23037 0.96744 1.01390 0.93056 0.88516 1.23014 0.99520 1.00740 0.95759 1.23008 0.85219 0.98537 0.95815 1.88833 1.28474 1.93901 1.19228 1.23543 0.99671 0.97621 0.80365 0.94098 0.94633 0.89905 0.92526 0.87719 0.87381 0.89882 0.89913 0.89000 0.90581 0.90950 0.92986 0.90638 0.87496 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.39 101.05 1.05 1.47 16 2 O -0.36 -6.86 8.29 -54.54 -0.45 -7.31 16 3 C 0.08 1.64 1.61 -27.89 -0.04 1.60 16 4 H 0.07 1.22 6.94 -51.93 -0.36 0.86 16 5 C 0.47 11.80 5.88 -10.99 -0.06 11.73 16 6 O -0.50 -14.75 14.05 -13.76 -0.19 -14.95 16 7 N -0.43 -10.43 2.85 -107.73 -0.31 -10.73 16 8 C -0.34 -9.25 7.62 -14.94 -0.11 -9.36 16 9 H 0.08 1.96 7.71 -52.48 -0.40 1.56 16 10 C 0.07 1.90 4.60 -17.47 -0.08 1.82 16 11 N -0.83 -24.05 11.30 55.50 0.63 -23.43 16 12 Si 0.91 21.73 29.57 -169.99 -5.03 16.71 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 C 0.07 1.29 5.50 -67.93 -0.37 0.92 16 17 C -0.17 -3.09 9.85 -26.70 -0.26 -3.35 16 18 C -0.21 -3.47 10.21 -26.69 -0.27 -3.74 16 19 C -0.12 -2.19 2.61 -88.61 -0.23 -2.43 16 20 H 0.10 1.75 6.03 -51.93 -0.31 1.44 16 21 C -0.15 -2.11 6.49 -25.20 -0.16 -2.28 16 22 C 0.05 0.74 7.70 37.73 0.29 1.03 16 23 O -0.39 -7.24 11.52 -35.23 -0.41 -7.64 16 24 C 0.06 1.30 6.68 38.21 0.26 1.56 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.41 6.99 -51.93 -0.36 0.05 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 29 H 0.11 1.81 4.99 -51.93 -0.26 1.55 16 30 H 0.11 2.16 7.05 -51.93 -0.37 1.79 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.08 0.99 5.88 -51.93 -0.31 0.69 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 2.52 8.14 -51.93 -0.42 2.09 16 39 H 0.07 1.54 7.17 -51.93 -0.37 1.17 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -32.56 312.38 -6.75 -39.31 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.68 Total: 4.38 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.01 Total: -1.05 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.32 Total: -34.16 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.05 Total: -29.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.56 -6.75 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.139 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds