Wall clock time and date at job start Mon Mar 30 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99885 * 2 1 4 4 H 1.09005 * 109.46672 * 0.95484 * 3 2 1 5 5 C 1.50693 * 109.47195 * 120.95270 * 3 2 1 6 6 O 1.21293 * 119.99756 * 17.10424 * 5 3 2 7 7 N 1.34779 * 120.00302 * 197.09943 * 5 3 2 8 8 C 1.37098 * 119.99932 * 175.67429 * 7 5 3 9 9 H 1.08005 * 119.99548 * 226.32275 * 8 7 5 10 10 C 1.38941 * 120.00282 * 46.32329 * 8 7 5 11 11 N 1.31413 * 120.00176 * 11.79329 * 10 8 7 12 12 Si 1.86798 * 120.00153 * 191.79450 * 10 8 7 13 13 H 1.48499 * 109.47152 * 59.99640 * 12 10 8 14 14 H 1.48499 * 109.47231 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47163 * 300.00161 * 12 10 8 16 16 C 1.46498 * 119.99722 * 355.67523 * 7 5 3 17 17 C 1.52992 * 117.49744 * 191.93057 * 16 7 5 18 18 C 1.53004 * 117.49970 * 123.26824 * 16 7 5 19 19 C 1.52998 * 109.46968 * 240.95635 * 3 2 1 20 20 H 1.09004 * 110.80283 * 182.75703 * 19 3 2 21 21 C 1.54817 * 110.93892 * 59.10858 * 19 3 2 22 22 C 1.54104 * 104.18493 * 220.90722 * 21 19 3 23 23 O 1.43739 * 107.29501 * 357.96995 * 22 21 19 24 24 C 1.44379 * 106.97550 * 26.51448 * 23 22 21 25 25 H 1.08996 * 109.47087 * 304.13351 * 1 2 3 26 26 H 1.08991 * 109.47348 * 64.13472 * 1 2 3 27 27 H 1.09000 * 109.47072 * 184.13912 * 1 2 3 28 28 H 0.96998 * 120.00170 * 184.98060 * 11 10 8 29 29 H 1.09003 * 115.55145 * 337.60172 * 16 7 5 30 30 H 1.09004 * 117.50229 * 0.02562 * 17 16 7 31 31 H 1.09001 * 117.50025 * 145.01961 * 17 16 7 32 32 H 1.08995 * 117.49821 * 214.97680 * 18 16 7 33 33 H 1.08995 * 117.49547 * 359.97438 * 18 16 7 34 34 H 1.08994 * 110.48690 * 339.58285 * 21 19 3 35 35 H 1.08998 * 110.48325 * 102.09828 * 21 19 3 36 36 H 1.08998 * 109.87529 * 117.39432 * 22 21 19 37 37 H 1.09005 * 109.87232 * 238.39437 * 22 21 19 38 38 H 1.08997 * 110.61572 * 201.43678 * 24 23 22 39 39 H 1.09001 * 110.62019 * 78.44240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2192 2.0553 0.0171 5 6 2.8821 1.4672 1.2184 6 8 3.2473 0.4897 1.8368 7 7 3.2562 2.6979 1.6209 8 6 3.9747 2.8516 2.7784 9 1 3.6932 3.6122 3.4917 10 6 5.0649 2.0290 3.0339 11 7 5.5508 1.2669 2.0800 12 14 5.8398 2.0062 4.7334 13 1 4.8275 1.5813 5.7334 14 1 6.9787 1.0533 4.7454 15 1 6.3296 3.3666 5.0724 16 6 2.8951 3.8712 0.8216 17 6 3.5743 5.1978 1.1673 18 6 2.0993 4.9798 1.5135 19 6 2.8574 1.4865 -1.2611 20 1 3.3507 2.4585 -1.2598 21 6 1.9978 1.3049 -2.5358 22 6 2.9008 0.4974 -3.4883 23 8 4.1578 0.2991 -2.8200 24 6 3.8922 0.3412 -1.4014 25 1 -0.3633 0.5766 0.8506 26 1 -0.3633 0.4483 -0.9246 27 1 -0.3633 -1.0250 0.0742 28 1 6.2645 0.6400 2.2762 29 1 2.6775 3.6759 -0.2285 30 1 4.2903 5.1975 1.9893 31 1 3.8033 5.8754 0.3448 32 1 1.3585 5.5139 0.9186 33 1 1.8441 4.8358 2.5634 34 1 1.0895 0.7476 -2.3072 35 1 1.7509 2.2735 -2.9705 36 1 2.4410 -0.4665 -3.7066 37 1 3.0540 1.0529 -4.4136 38 1 4.8013 0.5753 -0.8475 39 1 3.4674 -0.6036 -1.0623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:32 Heat of formation + Delta-G solvation = -97.794027 kcal Electronic energy + Delta-G solvation = -22511.805846 eV Core-core repulsion = 19227.716926 eV Total energy + Delta-G solvation = -3284.088920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28041 -39.78866 -38.48196 -37.44695 -34.69016 -33.84606 -32.66819 -30.72304 -28.32115 -27.44186 -25.90837 -23.78699 -23.07472 -22.76859 -21.58375 -21.28002 -18.57315 -17.82366 -17.79943 -17.31725 -17.07934 -16.50812 -15.96520 -15.79357 -15.59823 -15.25744 -15.15060 -14.68074 -14.44798 -13.96787 -13.89201 -13.36772 -13.04966 -12.80080 -12.76327 -12.48285 -12.37057 -12.26848 -12.20393 -12.07337 -11.85242 -11.71518 -11.53601 -11.21823 -10.91057 -10.64065 -10.58345 -9.67090 -8.91765 -8.08862 -6.00558 1.36900 1.43027 1.47508 2.23013 2.36701 2.63614 3.03155 3.14761 3.27038 3.38549 3.51804 3.81698 3.95582 4.07778 4.10879 4.14785 4.28222 4.30311 4.41523 4.47527 4.53847 4.57108 4.64415 4.80102 4.85274 4.87316 4.91513 4.99653 5.05632 5.11517 5.22723 5.30380 5.49701 5.51434 5.93494 6.14505 6.28649 7.07411 7.25354 7.71377 8.39581 8.91991 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.007653 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.741504 B = 3657.994971 C = 3970.757192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.386 6.386 3 C 0.100 3.900 4 H 0.103 0.897 5 C 0.457 3.543 6 O -0.563 6.563 7 N -0.442 5.442 8 C -0.351 4.351 9 H 0.077 0.923 10 C 0.015 3.985 11 N -0.859 5.859 12 Si 0.965 3.035 13 H -0.281 1.281 14 H -0.291 1.291 15 H -0.257 1.257 16 C 0.037 3.963 17 C -0.175 4.175 18 C -0.179 4.179 19 C -0.118 4.118 20 H 0.094 0.906 21 C -0.138 4.138 22 C 0.040 3.960 23 O -0.405 6.405 24 C 0.072 3.928 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.254 0.746 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 5.432 -10.075 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.304 6.304 3 C 0.039 3.961 4 H 0.121 0.879 5 C 0.245 3.755 6 O -0.442 6.442 7 N -0.164 5.164 8 C -0.479 4.479 9 H 0.095 0.905 10 C -0.191 4.191 11 N -0.494 5.494 12 Si 0.790 3.210 13 H -0.207 1.207 14 H -0.217 1.217 15 H -0.182 1.182 16 C -0.068 4.068 17 C -0.212 4.212 18 C -0.218 4.218 19 C -0.137 4.137 20 H 0.112 0.888 21 C -0.175 4.175 22 C -0.036 4.036 23 O -0.325 6.325 24 C -0.004 4.004 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.413 4.610 -9.926 15.106 hybrid contribution 0.564 -0.248 1.398 1.528 sum -9.849 4.362 -8.528 13.739 Atomic orbital electron populations 1.23152 0.79449 1.03892 1.01074 1.87975 1.21403 1.26328 1.94672 1.21777 0.95631 0.86412 0.92316 0.87938 1.20967 0.83307 0.83730 0.87505 1.90510 1.56046 1.39294 1.58337 1.42953 1.48590 1.03533 1.21371 1.19045 1.08863 1.22389 0.97634 0.90541 1.26062 0.95631 0.96827 1.00588 1.69977 1.24556 1.21660 1.33212 0.85461 0.77391 0.78293 0.79854 1.20704 1.21676 1.18173 1.22216 1.05515 0.83619 0.95428 1.23128 0.95810 0.98356 1.03941 1.23331 0.94555 1.02493 1.01372 1.22955 0.96492 0.99746 0.94544 0.88833 1.23006 0.98761 1.02805 0.92937 1.23370 0.83628 0.99963 0.96602 1.88805 1.31338 1.94149 1.18188 1.23140 0.98222 0.97907 0.81156 0.94248 0.91064 0.88523 0.93635 0.85106 0.90389 0.86472 0.85443 0.90746 0.89265 0.87266 0.91857 0.87609 0.92259 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.39 113.37 1.18 1.69 16 2 O -0.39 -14.55 8.29 -130.52 -1.08 -15.63 16 3 C 0.10 3.78 1.61 29.84 0.05 3.82 16 4 H 0.10 3.15 6.94 -2.38 -0.02 3.13 16 5 C 0.46 23.33 5.88 87.65 0.52 23.84 16 6 O -0.56 -35.00 14.05 15.39 0.22 -34.78 16 7 N -0.44 -21.80 2.85 -613.14 -1.75 -23.55 16 8 C -0.35 -19.35 7.62 84.04 0.64 -18.71 16 9 H 0.08 4.06 7.71 -2.91 -0.02 4.04 16 10 C 0.02 0.89 4.60 84.92 0.39 1.28 16 11 N -0.86 -52.97 11.30 21.66 0.24 -52.73 16 12 Si 0.96 46.23 29.57 68.60 2.03 48.26 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.04 1.36 5.50 44.99 0.25 1.61 16 17 C -0.17 -5.82 9.85 30.62 0.30 -5.52 16 18 C -0.18 -5.36 10.21 30.62 0.31 -5.05 16 19 C -0.12 -4.04 2.61 -9.49 -0.02 -4.06 16 20 H 0.09 3.24 6.03 -2.38 -0.01 3.22 16 21 C -0.14 -3.23 6.49 31.59 0.21 -3.02 16 22 C 0.04 1.04 7.70 72.36 0.56 1.59 16 23 O -0.41 -15.09 11.52 -148.98 -1.72 -16.80 16 24 C 0.07 3.05 6.68 72.66 0.49 3.53 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.31 6.99 -2.39 -0.02 1.30 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.25 15.48 8.32 -92.71 -0.77 14.71 16 29 H 0.13 4.08 4.99 -2.39 -0.01 4.06 16 30 H 0.08 3.09 7.05 -2.39 -0.02 3.07 16 31 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.09 1.89 5.88 -2.39 -0.01 1.87 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.06 3.02 8.14 -2.39 -0.02 3.01 16 39 H 0.05 2.32 7.17 -2.39 -0.02 2.30 16 Total: -1.00 -77.36 312.38 3.85 -73.52 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.04 Total: 20.69 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.86 Total: 1.02 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.50 Total: -76.27 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -2.58 Total: -67.22 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.36 3.85 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.278 kcal (2) G-P(sol) polarization free energy of solvation -77.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds