Wall clock time and date at job start Mon Mar 30 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99752 * 2 1 4 4 H 1.08999 * 109.47494 * 29.99919 * 3 2 1 5 5 C 1.50697 * 109.47119 * 269.99602 * 3 2 1 6 6 O 1.21292 * 119.99745 * 355.00437 * 5 3 2 7 7 N 1.34777 * 120.00331 * 174.99691 * 5 3 2 8 8 C 1.37099 * 120.00243 * 180.02562 * 7 5 3 9 9 H 1.08000 * 120.00051 * 223.85569 * 8 7 5 10 10 C 1.38946 * 119.99773 * 43.85957 * 8 7 5 11 11 N 1.31421 * 119.99565 * 208.60240 * 10 8 7 12 12 Si 1.86793 * 120.00320 * 28.60018 * 10 8 7 13 13 H 1.48498 * 109.47260 * 95.59725 * 12 10 8 14 14 H 1.48506 * 109.47195 * 215.59578 * 12 10 8 15 15 H 1.48501 * 109.47505 * 335.59769 * 12 10 8 16 16 C 1.46500 * 119.99621 * 0.02562 * 7 5 3 17 17 C 1.53007 * 117.49852 * 121.61481 * 16 7 5 18 18 C 1.52999 * 60.03171 * 107.49941 * 17 16 7 19 19 C 1.52998 * 109.47031 * 149.99914 * 3 2 1 20 20 H 1.09005 * 110.45211 * 177.39628 * 19 3 2 21 21 C 1.54514 * 110.51190 * 299.99626 * 19 3 2 22 22 C 1.54482 * 104.06135 * 118.64497 * 21 19 3 23 23 O 1.44426 * 104.80091 * 23.98193 * 22 21 19 24 24 C 1.44421 * 105.27401 * 319.48658 * 23 22 21 25 25 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47593 * 300.00312 * 1 2 3 27 27 H 1.08999 * 109.47420 * 60.00687 * 1 2 3 28 28 H 0.97000 * 119.99752 * 179.97438 * 11 10 8 29 29 H 1.09003 * 115.56736 * 335.92529 * 16 7 5 30 30 H 1.09001 * 117.49406 * 359.97438 * 17 16 7 31 31 H 1.09002 * 117.49801 * 215.00311 * 17 16 7 32 32 H 1.09003 * 117.49545 * 107.47810 * 18 17 16 33 33 H 1.09000 * 117.49974 * 252.47467 * 18 17 16 34 34 H 1.09003 * 110.51079 * 237.29180 * 21 19 3 35 35 H 1.09007 * 110.50976 * 359.86537 * 21 19 3 36 36 H 1.09006 * 110.36958 * 142.80974 * 22 21 19 37 37 H 1.08997 * 110.37315 * 265.03855 * 22 21 19 38 38 H 1.09004 * 110.37546 * 281.67701 * 24 23 22 39 39 H 1.08999 * 110.37292 * 159.34770 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.8442 3.4301 -2.9612 9 1 3.7327 3.9832 -3.2278 10 6 1.8890 3.1417 -3.9282 11 7 2.2465 3.0096 -5.1860 12 14 0.0970 2.9419 -3.4406 13 1 -0.6177 4.2277 -3.6437 14 1 -0.5300 1.8892 -4.2798 15 1 0.0137 2.5499 -2.0107 16 6 2.9435 3.9228 -0.5567 17 6 4.3622 4.4858 -0.4501 18 6 3.2122 5.3911 -0.8960 19 6 3.3588 1.2633 0.7213 20 1 3.8379 2.2420 0.6906 21 6 3.1769 0.7952 2.1825 22 6 4.0044 -0.5067 2.2653 23 8 4.9848 -0.3883 1.2114 24 6 4.2747 0.1891 0.0942 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.5797 2.8079 -5.8610 29 1 2.4155 3.7097 0.3728 30 1 5.0838 4.1785 -1.2071 31 1 4.7677 4.6426 0.5495 32 1 2.8609 6.1433 -0.1896 33 1 3.1774 5.6801 -1.9465 34 1 3.5683 1.5412 2.8741 35 1 2.1258 0.5961 2.3917 36 1 4.4968 -0.5823 3.2349 37 1 3.3658 -1.3736 2.0962 38 1 3.6779 -0.5711 -0.4099 39 1 4.9746 0.6478 -0.6041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:35 Heat of formation + Delta-G solvation = -74.078086 kcal Electronic energy + Delta-G solvation = -22686.873840 eV Core-core repulsion = 19403.813320 eV Total energy + Delta-G solvation = -3283.060520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10974 -38.49971 -37.22609 -36.04164 -32.93566 -32.72031 -31.37154 -29.51015 -26.93104 -26.16166 -24.13657 -22.76147 -21.87468 -21.52275 -20.21657 -19.59517 -17.35599 -16.49695 -16.23227 -16.07860 -15.77179 -15.02986 -14.68051 -14.65628 -14.17625 -13.86908 -13.52731 -13.32660 -13.16338 -12.78732 -12.50095 -12.27858 -11.67024 -11.39712 -11.31520 -11.10050 -11.01594 -10.96279 -10.65697 -10.58403 -10.34606 -10.26072 -10.01307 -9.85657 -9.77388 -9.47454 -8.69260 -8.15892 -7.47738 -6.32866 -3.98279 3.15769 3.36240 3.40737 3.64457 3.89389 4.23932 4.35864 4.40329 4.51470 4.72983 4.93237 5.06218 5.15375 5.20656 5.32907 5.37887 5.42736 5.49721 5.55788 5.62827 5.68696 5.72866 5.82664 5.88011 5.91638 5.95724 6.06092 6.11086 6.22738 6.29290 6.39532 6.59595 6.82828 7.02514 7.31556 7.77424 7.98711 8.74386 8.92346 9.38026 9.82211 10.74967 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.008879 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.656950 B = 3152.785924 C = 3801.321209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.083 3.917 4 H 0.072 0.928 5 C 0.451 3.549 6 O -0.533 6.533 7 N -0.433 5.433 8 C -0.358 4.358 9 H 0.093 0.907 10 C 0.105 3.895 11 N -0.844 5.844 12 Si 0.905 3.095 13 H -0.295 1.295 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.056 3.944 17 C -0.197 4.197 18 C -0.174 4.174 19 C -0.116 4.116 20 H 0.108 0.892 21 C -0.146 4.146 22 C 0.049 3.951 23 O -0.380 6.380 24 C 0.057 3.943 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.273 0.727 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -0.490 15.204 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.021 3.979 4 H 0.090 0.910 5 C 0.239 3.761 6 O -0.413 6.413 7 N -0.156 5.156 8 C -0.483 4.483 9 H 0.111 0.889 10 C -0.106 4.106 11 N -0.477 5.477 12 Si 0.734 3.266 13 H -0.223 1.223 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.050 4.050 17 C -0.235 4.235 18 C -0.211 4.211 19 C -0.135 4.135 20 H 0.126 0.874 21 C -0.183 4.183 22 C -0.027 4.027 23 O -0.299 6.299 24 C -0.020 4.020 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.782 -1.179 14.500 14.569 hybrid contribution -1.493 0.360 0.139 1.542 sum -2.275 -0.819 14.639 14.838 Atomic orbital electron populations 1.22795 0.81390 1.02473 0.99860 1.87874 1.19336 1.25674 1.94652 1.22000 0.94981 0.85868 0.95034 0.91032 1.20612 0.82934 0.82208 0.90333 1.90536 1.52160 1.53313 1.45276 1.43189 1.59487 1.08039 1.04850 1.18536 1.06859 1.41591 0.81322 0.88908 1.25205 0.99038 0.92087 0.94295 1.69866 1.34871 1.40929 1.02057 0.86330 0.85034 0.76096 0.79121 1.22294 1.21219 1.20229 1.21903 0.98192 0.92295 0.92597 1.23294 0.92770 1.05544 1.01941 1.23189 1.02111 0.92333 1.03512 1.22771 0.94379 1.02165 0.94225 0.87421 1.22936 1.01341 0.98008 0.96049 1.23304 0.90786 0.96989 0.91670 1.89071 1.33286 1.83806 1.23735 1.23398 0.94636 0.94833 0.89088 0.89703 0.94659 0.93626 0.91743 0.87657 0.88446 0.89447 0.89520 0.86943 0.90849 0.90459 0.89777 0.92257 0.90581 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.81 101.05 1.09 1.59 16 2 O -0.36 -6.62 8.30 -55.09 -0.46 -7.07 16 3 C 0.08 1.52 1.29 -27.89 -0.04 1.49 16 4 H 0.07 1.18 6.95 -51.93 -0.36 0.82 16 5 C 0.45 10.63 4.32 -10.99 -0.05 10.58 16 6 O -0.53 -14.94 13.38 -14.31 -0.19 -15.13 16 7 N -0.43 -10.06 2.44 -107.68 -0.26 -10.32 16 8 C -0.36 -9.73 8.07 -14.93 -0.12 -9.85 16 9 H 0.09 2.63 7.72 -52.49 -0.41 2.23 16 10 C 0.10 3.02 4.55 -17.47 -0.08 2.94 16 11 N -0.84 -25.38 13.96 55.50 0.77 -24.60 16 12 Si 0.91 23.48 26.14 -169.99 -4.44 19.04 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 15 H -0.28 -6.95 5.75 56.52 0.32 -6.62 16 16 C 0.06 1.00 4.41 -67.89 -0.30 0.70 16 17 C -0.20 -3.10 9.58 -26.73 -0.26 -3.35 16 18 C -0.17 -2.86 9.82 -26.69 -0.26 -3.12 16 19 C -0.12 -1.84 2.67 -89.06 -0.24 -2.08 16 20 H 0.11 1.65 5.19 -51.93 -0.27 1.38 16 21 C -0.15 -1.81 6.51 -25.16 -0.16 -1.98 16 22 C 0.05 0.64 7.63 37.94 0.29 0.93 16 23 O -0.38 -6.30 11.65 -35.23 -0.41 -6.71 16 24 C 0.06 1.01 6.59 37.93 0.25 1.26 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 28 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.11 1.61 6.21 -51.93 -0.32 1.29 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.11 2.13 6.94 -51.93 -0.36 1.77 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.90 7.52 -51.93 -0.39 0.51 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.50 7.06 -51.93 -0.37 1.13 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -32.93 309.18 -6.11 -39.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.90 Total: 2.01 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 0.13 Total: -0.90 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.51 Total: -34.93 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.06 Total: -28.91 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.44 Total: 19.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.93 -6.11 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.047 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds