Wall clock time and date at job start Mon Mar 30 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99752 * 2 1 4 4 H 1.08999 * 109.47494 * 29.99919 * 3 2 1 5 5 C 1.50697 * 109.47119 * 269.99602 * 3 2 1 6 6 O 1.21292 * 119.99745 * 355.00437 * 5 3 2 7 7 N 1.34777 * 120.00331 * 174.99691 * 5 3 2 8 8 C 1.37099 * 120.00243 * 180.02562 * 7 5 3 9 9 H 1.08000 * 120.00051 * 223.85569 * 8 7 5 10 10 C 1.38946 * 119.99773 * 43.85957 * 8 7 5 11 11 N 1.31421 * 119.99565 * 208.60240 * 10 8 7 12 12 Si 1.86793 * 120.00320 * 28.60018 * 10 8 7 13 13 H 1.48498 * 109.47260 * 95.59725 * 12 10 8 14 14 H 1.48506 * 109.47195 * 215.59578 * 12 10 8 15 15 H 1.48501 * 109.47505 * 335.59769 * 12 10 8 16 16 C 1.46500 * 119.99621 * 0.02562 * 7 5 3 17 17 C 1.53007 * 117.49852 * 121.61481 * 16 7 5 18 18 C 1.52999 * 60.03171 * 107.49941 * 17 16 7 19 19 C 1.52998 * 109.47031 * 149.99914 * 3 2 1 20 20 H 1.09005 * 110.45211 * 177.39628 * 19 3 2 21 21 C 1.54514 * 110.51190 * 299.99626 * 19 3 2 22 22 C 1.54482 * 104.06135 * 118.64497 * 21 19 3 23 23 O 1.44426 * 104.80091 * 23.98193 * 22 21 19 24 24 C 1.44421 * 105.27401 * 319.48658 * 23 22 21 25 25 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47593 * 300.00312 * 1 2 3 27 27 H 1.08999 * 109.47420 * 60.00687 * 1 2 3 28 28 H 0.97000 * 119.99752 * 179.97438 * 11 10 8 29 29 H 1.09003 * 115.56736 * 335.92529 * 16 7 5 30 30 H 1.09001 * 117.49406 * 359.97438 * 17 16 7 31 31 H 1.09002 * 117.49801 * 215.00311 * 17 16 7 32 32 H 1.09003 * 117.49545 * 107.47810 * 18 17 16 33 33 H 1.09000 * 117.49974 * 252.47467 * 18 17 16 34 34 H 1.09003 * 110.51079 * 237.29180 * 21 19 3 35 35 H 1.09007 * 110.50976 * 359.86537 * 21 19 3 36 36 H 1.09006 * 110.36958 * 142.80974 * 22 21 19 37 37 H 1.08997 * 110.37315 * 265.03855 * 22 21 19 38 38 H 1.09004 * 110.37546 * 281.67701 * 24 23 22 39 39 H 1.08999 * 110.37292 * 159.34770 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.8442 3.4301 -2.9612 9 1 3.7327 3.9832 -3.2278 10 6 1.8890 3.1417 -3.9282 11 7 2.2465 3.0096 -5.1860 12 14 0.0970 2.9419 -3.4406 13 1 -0.6177 4.2277 -3.6437 14 1 -0.5300 1.8892 -4.2798 15 1 0.0137 2.5499 -2.0107 16 6 2.9435 3.9228 -0.5567 17 6 4.3622 4.4858 -0.4501 18 6 3.2122 5.3911 -0.8960 19 6 3.3588 1.2633 0.7213 20 1 3.8379 2.2420 0.6906 21 6 3.1769 0.7952 2.1825 22 6 4.0044 -0.5067 2.2653 23 8 4.9848 -0.3883 1.2114 24 6 4.2747 0.1891 0.0942 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.5797 2.8079 -5.8610 29 1 2.4155 3.7097 0.3728 30 1 5.0838 4.1785 -1.2071 31 1 4.7677 4.6426 0.5495 32 1 2.8609 6.1433 -0.1896 33 1 3.1774 5.6801 -1.9465 34 1 3.5683 1.5412 2.8741 35 1 2.1258 0.5961 2.3917 36 1 4.4968 -0.5823 3.2349 37 1 3.3658 -1.3736 2.0962 38 1 3.6779 -0.5711 -0.4099 39 1 4.9746 0.6478 -0.6041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:34 Heat of formation + Delta-G solvation = -97.641343 kcal Electronic energy + Delta-G solvation = -22687.895619 eV Core-core repulsion = 19403.813320 eV Total energy + Delta-G solvation = -3284.082299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60835 -39.93316 -38.63046 -37.65701 -34.92000 -34.06650 -33.18711 -30.68203 -28.39829 -27.62174 -25.88195 -24.01701 -23.18494 -22.91624 -21.58804 -21.27321 -19.06062 -17.93970 -17.86624 -17.53016 -17.03382 -16.80956 -16.12324 -15.89202 -15.54130 -15.40931 -15.23620 -15.11507 -14.55226 -14.32520 -14.19616 -13.52306 -13.25217 -12.98727 -12.75730 -12.61391 -12.46744 -12.26960 -12.21661 -12.02726 -11.86976 -11.79385 -11.48464 -11.37661 -11.19085 -10.77844 -10.70231 -9.92807 -9.33575 -8.51603 -6.14459 1.15134 1.23123 1.30690 1.87656 2.34745 2.39131 2.79386 2.95862 3.06098 3.23829 3.49190 3.72191 3.87317 3.95457 4.04799 4.07897 4.20720 4.25670 4.32910 4.42773 4.45947 4.50005 4.56421 4.75134 4.78910 4.90785 4.91504 4.95713 5.00270 5.13474 5.19234 5.25808 5.50022 5.66108 5.83971 5.85940 6.03839 6.77743 6.94305 7.35001 7.92636 8.60199 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.008879 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.656950 B = 3152.785924 C = 3801.321209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.092 3.908 4 H 0.105 0.895 5 C 0.441 3.559 6 O -0.590 6.590 7 N -0.445 5.445 8 C -0.348 4.348 9 H 0.065 0.935 10 C 0.055 3.945 11 N -0.895 5.895 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.306 1.306 15 H -0.262 1.262 16 C 0.034 3.966 17 C -0.179 4.179 18 C -0.170 4.170 19 C -0.112 4.112 20 H 0.118 0.882 21 C -0.133 4.133 22 C 0.040 3.960 23 O -0.395 6.395 24 C 0.059 3.941 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.011 0.989 28 H 0.272 0.728 29 H 0.148 0.852 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 0.384 20.018 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.122 0.878 5 C 0.231 3.769 6 O -0.474 6.474 7 N -0.167 5.167 8 C -0.474 4.474 9 H 0.083 0.917 10 C -0.151 4.151 11 N -0.531 5.531 12 Si 0.780 3.220 13 H -0.205 1.205 14 H -0.233 1.233 15 H -0.187 1.187 16 C -0.070 4.070 17 C -0.217 4.217 18 C -0.208 4.208 19 C -0.131 4.131 20 H 0.136 0.864 21 C -0.171 4.171 22 C -0.036 4.036 23 O -0.314 6.314 24 C -0.018 4.018 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.165 0.835 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.579 -0.267 19.369 19.435 hybrid contribution -1.119 0.032 -1.320 1.731 sum -2.699 -0.235 18.049 18.251 Atomic orbital electron populations 1.23007 0.80036 1.04066 0.99990 1.87887 1.20923 1.25834 1.94397 1.22010 0.97087 0.86465 0.91360 0.87753 1.21762 0.81106 0.81596 0.92438 1.90504 1.54384 1.54786 1.47698 1.43328 1.59356 1.09241 1.04815 1.18408 1.05485 1.39858 0.83677 0.91740 1.25869 1.02419 0.92503 0.94346 1.69964 1.35755 1.44208 1.03173 0.85585 0.81332 0.75942 0.79131 1.20474 1.23334 1.18698 1.22307 1.00479 0.92148 0.92033 1.23320 0.91199 1.03826 1.03383 1.23240 1.02411 0.92467 1.02655 1.22784 0.92239 1.01876 0.96163 0.86429 1.22949 1.02398 0.98088 0.93618 1.23609 0.90672 0.97517 0.91802 1.89059 1.34428 1.83827 1.24128 1.23162 0.94268 0.94831 0.89562 0.87692 0.90750 0.96988 0.91910 0.83498 0.91527 0.84824 0.85222 0.90548 0.87544 0.88956 0.86621 0.92578 0.93516 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.81 113.37 1.23 1.95 16 2 O -0.37 -12.99 8.30 -129.99 -1.08 -14.07 16 3 C 0.09 3.12 1.29 29.85 0.04 3.16 16 4 H 0.10 2.87 6.95 -2.39 -0.02 2.85 16 5 C 0.44 20.61 4.32 87.66 0.38 20.98 16 6 O -0.59 -34.02 13.38 15.92 0.21 -33.81 16 7 N -0.45 -20.51 2.44 -612.99 -1.50 -22.01 16 8 C -0.35 -19.58 8.07 84.04 0.68 -18.90 16 9 H 0.06 3.89 7.72 -2.91 -0.02 3.87 16 10 C 0.05 3.26 4.55 84.92 0.39 3.65 16 11 N -0.89 -56.79 13.96 21.66 0.30 -56.49 16 12 Si 0.95 49.45 26.14 68.60 1.79 51.24 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.31 -16.71 7.11 99.48 0.71 -16.00 16 15 H -0.26 -12.80 5.75 99.48 0.57 -12.23 16 16 C 0.03 1.12 4.41 45.02 0.20 1.32 16 17 C -0.18 -5.10 9.58 30.60 0.29 -4.81 16 18 C -0.17 -5.13 9.82 30.62 0.30 -4.83 16 19 C -0.11 -3.16 2.67 -9.78 -0.03 -3.19 16 20 H 0.12 3.09 5.19 -2.38 -0.01 3.08 16 21 C -0.13 -2.59 6.51 31.61 0.21 -2.38 16 22 C 0.04 0.89 7.63 72.49 0.55 1.44 16 23 O -0.40 -12.40 11.65 -148.98 -1.74 -14.14 16 24 C 0.06 2.06 6.59 72.48 0.48 2.54 16 25 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 27 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 28 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 29 H 0.15 3.61 6.21 -2.39 -0.01 3.59 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.08 2.89 6.94 -2.39 -0.02 2.88 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.58 7.52 -2.38 -0.02 1.56 16 36 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.89 7.06 -2.38 -0.02 1.87 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -78.30 309.18 3.61 -74.68 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.90 Total: 13.66 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 4.71 Total: 0.93 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.19 Total: -78.50 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -2.60 Total: -62.02 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.79 Total: 51.24 kcal Total: -78.30 3.61 -74.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.957 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds