Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 C 1.50699 * 109.47520 * 239.99970 * 2 1 3 5 5 H 1.07996 * 119.99832 * 240.00145 * 4 2 1 6 6 C 1.37874 * 119.99966 * 59.99325 * 4 2 1 7 7 N 1.31520 * 120.00096 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47190 * 60.00351 * 8 6 4 10 10 H 1.48502 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47275 * 300.00180 * 8 6 4 12 12 C 1.50702 * 109.47138 * 119.99540 * 2 1 3 13 13 O 1.21284 * 119.99627 * 86.07311 * 12 2 1 14 14 N 1.34779 * 119.99937 * 266.34061 * 12 2 1 15 15 C 1.47073 * 120.88066 * 4.71611 * 14 12 2 16 16 C 1.53700 * 108.27543 * 128.75247 * 15 14 12 17 17 N 1.46899 * 109.25363 * 54.08442 * 16 15 14 18 18 C 1.46902 * 111.00126 * 172.60697 * 17 16 15 19 19 C 1.50707 * 109.46857 * 59.21087 * 18 17 16 20 20 N 1.34777 * 119.99588 * 185.51438 * 19 18 17 21 21 O 1.21278 * 119.99996 * 5.51121 * 19 18 17 22 22 C 1.46898 * 111.26909 * 296.75348 * 17 16 15 23 23 C 1.47077 * 120.87842 * 184.99636 * 14 12 2 24 24 H 1.09001 * 109.47013 * 304.65820 * 1 2 3 25 25 H 1.08996 * 109.47190 * 64.65895 * 1 2 3 26 26 H 1.09008 * 109.46952 * 184.66118 * 1 2 3 27 27 H 0.97001 * 120.00410 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.63042 * 248.52093 * 15 14 12 29 29 H 1.09004 * 109.63141 * 9.10608 * 15 14 12 30 30 H 1.08999 * 109.65172 * 294.08449 * 16 15 14 31 31 H 1.09003 * 109.42464 * 173.94382 * 16 15 14 32 32 H 1.09000 * 109.47480 * 179.21082 * 18 17 16 33 33 H 1.08992 * 109.47335 * 299.21184 * 18 17 16 34 34 H 0.96994 * 120.00234 * 359.97438 * 20 19 18 35 35 H 0.97001 * 119.99720 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.49618 * 303.14851 * 22 17 16 37 37 H 1.09000 * 109.49550 * 183.06415 * 22 17 16 38 38 H 1.09007 * 109.62930 * 350.89281 * 23 14 12 39 39 H 1.08998 * 109.63062 * 111.47647 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0323 -0.7103 1.2305 13 8 2.1666 -1.9157 1.2225 14 7 2.3272 -0.0067 2.3416 15 6 2.0694 1.4397 2.4098 16 6 1.2705 1.7270 3.6910 17 7 1.9886 1.1696 4.8449 18 6 1.3515 1.5719 6.1060 19 6 -0.0754 1.0874 6.1248 20 7 -0.8922 1.4364 7.1385 21 8 -0.4887 0.3836 5.2277 22 6 2.0940 -0.2926 4.7514 23 6 2.9210 -0.6638 3.5158 24 1 -0.3633 0.5844 0.8453 25 1 -0.3633 0.4398 -0.9287 26 1 -0.3633 -1.0244 0.0835 27 1 0.7093 1.1617 -3.4844 28 1 3.0159 1.9795 2.4360 29 1 1.4916 1.7501 1.5391 30 1 0.2849 1.2671 3.6193 31 1 1.1615 2.8043 3.8163 32 1 1.8949 1.1343 6.9434 33 1 1.3674 2.6584 6.1907 34 1 -0.5615 1.9990 7.8561 35 1 -1.8105 1.1242 7.1508 36 1 1.0969 -0.7244 4.6649 37 1 2.5822 -0.6801 5.6456 38 1 2.9064 -1.7449 3.3768 39 1 3.9478 -0.3224 3.6464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596947426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = -57.933911 kcal Electronic energy + Delta-G solvation = -21653.589116 eV Core-core repulsion = 18403.521412 eV Total energy + Delta-G solvation = -3250.067705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42795 -39.00027 -36.97371 -33.98862 -33.88828 -33.70948 -31.15547 -30.03091 -28.70531 -25.15278 -25.05001 -23.65339 -22.25081 -21.03086 -20.35151 -18.39122 -17.38773 -16.97439 -16.41655 -16.03721 -15.62823 -15.00641 -14.78935 -14.66064 -14.48753 -14.37624 -14.19713 -13.06139 -12.88070 -12.61657 -12.19522 -12.05388 -11.80987 -11.31683 -11.03620 -10.95344 -10.84996 -10.84416 -10.66210 -10.63061 -10.50871 -10.18178 -9.96990 -9.84258 -8.93786 -8.49888 -8.36040 -8.18985 -7.80747 -5.97671 -4.01241 2.38262 3.30199 3.39761 3.41900 3.47111 3.65984 3.81438 3.98897 4.51575 4.69830 4.84655 5.03916 5.18968 5.30716 5.34521 5.52804 5.66113 5.69666 5.81178 5.98363 6.04518 6.25354 6.32204 6.41351 6.57788 6.75364 6.79805 6.97943 6.99598 7.08796 7.10713 7.22808 7.54285 7.84589 8.03403 8.05882 8.21894 8.48075 9.02676 9.33834 9.62977 11.09315 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.004631 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.386812 B = 6045.287209 C = 6311.444321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.497 4.497 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.526 3.474 13 O -0.552 6.552 14 N -0.626 5.626 15 C 0.118 3.882 16 C 0.024 3.976 17 N -0.512 5.512 18 C 0.034 3.966 19 C 0.477 3.523 20 N -0.859 5.859 21 O -0.529 6.529 22 C 0.028 3.972 23 C 0.118 3.882 24 H 0.012 0.988 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.399 0.601 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 6.945 20.679 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.428 6.428 14 N -0.362 5.362 15 C -0.006 4.006 16 C -0.104 4.104 17 N -0.235 5.235 18 C -0.098 4.098 19 C 0.261 3.739 20 N -0.424 5.424 21 O -0.404 6.404 22 C -0.101 4.101 23 C -0.006 4.006 24 H 0.031 0.969 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.227 0.773 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.257 6.125 19.799 20.726 hybrid contribution -0.789 -0.415 -0.172 0.908 sum -1.046 5.710 19.626 20.467 Atomic orbital electron populations 1.21692 0.96214 0.99347 1.01520 1.18888 0.94277 0.96567 0.89176 0.93564 1.21001 1.31087 1.12330 0.89182 0.91636 1.24922 0.95117 0.95069 0.98986 1.69858 1.36972 1.23021 1.23593 0.86516 0.79177 0.79835 0.81675 1.20157 1.21319 1.20238 1.22004 0.74541 0.87708 0.83925 1.90508 1.53549 1.15276 1.83509 1.48346 1.64526 1.08680 1.14644 1.21833 0.99821 0.81523 0.97408 1.22878 0.97999 0.99382 0.90175 1.62398 1.48701 1.11624 1.00786 1.22372 0.89091 1.02676 0.95681 1.22398 0.89891 0.80066 0.81519 1.44118 1.15876 1.55724 1.26653 1.90770 1.76888 1.36937 1.35850 1.22729 1.01617 0.87216 0.98510 1.21465 0.95778 0.99156 0.84186 0.96938 0.88689 0.94992 0.92897 0.91662 0.88170 0.91072 0.90546 0.87668 0.87716 0.77258 0.77237 0.91247 0.90823 0.89211 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.93 37.16 0.33 -2.97 16 2 C 0.03 0.84 1.83 -92.92 -0.17 0.67 16 3 H 0.05 1.21 6.28 -51.93 -0.33 0.89 16 4 C -0.50 -14.63 8.32 -34.44 -0.29 -14.92 16 5 H 0.07 2.02 7.23 -52.49 -0.38 1.64 16 6 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 7 N -0.90 -25.62 11.30 55.43 0.63 -25.00 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.53 13.16 6.70 -10.98 -0.07 13.09 16 13 O -0.55 -15.48 15.53 5.55 0.09 -15.39 16 14 N -0.63 -12.62 3.00 -172.18 -0.52 -13.14 16 15 C 0.12 2.00 6.32 -3.37 -0.02 1.98 16 16 C 0.02 0.34 5.13 -3.46 -0.02 0.33 16 17 N -0.51 -6.45 4.83 -235.46 -1.14 -7.59 16 18 C 0.03 0.29 5.84 -4.97 -0.03 0.26 16 19 C 0.48 5.00 7.50 -10.98 -0.08 4.92 16 20 N -0.86 -5.31 8.87 31.22 0.28 -5.03 16 21 O -0.53 -8.43 12.51 5.56 0.07 -8.36 16 22 C 0.03 0.40 5.21 -3.70 -0.02 0.38 16 23 C 0.12 2.02 6.61 -3.60 -0.02 1.99 16 24 H 0.01 0.27 7.84 -51.93 -0.41 -0.14 16 25 H 0.09 2.58 5.96 -51.93 -0.31 2.27 16 26 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.83 5.38 -51.93 -0.28 1.55 16 30 H 0.07 1.23 5.69 -51.93 -0.30 0.94 16 31 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.11 0.66 8.06 -51.93 -0.42 0.25 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 35 H 0.40 2.41 8.93 -40.82 -0.36 2.04 16 36 H 0.07 1.21 5.78 -51.93 -0.30 0.91 16 37 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 38 H 0.09 1.68 7.04 -51.93 -0.37 1.31 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -35.91 308.64 -6.92 -42.83 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.47 Total: 2.45 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.49 Total: 7.33 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.75 Total: -50.75 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.16 Total: -23.75 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.91 -6.92 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596947426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.106 kcal (2) G-P(sol) polarization free energy of solvation -35.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds