Wall clock time and date at job start Mon Mar 30 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 C 1.50699 * 109.47520 * 239.99970 * 2 1 3 5 5 H 1.07996 * 119.99832 * 240.00145 * 4 2 1 6 6 C 1.37874 * 119.99966 * 59.99325 * 4 2 1 7 7 N 1.31520 * 120.00096 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47190 * 60.00351 * 8 6 4 10 10 H 1.48502 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47275 * 300.00180 * 8 6 4 12 12 C 1.50702 * 109.47138 * 119.99540 * 2 1 3 13 13 O 1.21284 * 119.99627 * 86.07311 * 12 2 1 14 14 N 1.34779 * 119.99937 * 266.34061 * 12 2 1 15 15 C 1.47073 * 120.88066 * 4.71611 * 14 12 2 16 16 C 1.53700 * 108.27543 * 128.75247 * 15 14 12 17 17 N 1.46899 * 109.25363 * 54.08442 * 16 15 14 18 18 C 1.46902 * 111.00126 * 172.60697 * 17 16 15 19 19 C 1.50707 * 109.46857 * 59.21087 * 18 17 16 20 20 N 1.34777 * 119.99588 * 185.51438 * 19 18 17 21 21 O 1.21278 * 119.99996 * 5.51121 * 19 18 17 22 22 C 1.46898 * 111.26909 * 296.75348 * 17 16 15 23 23 C 1.47077 * 120.87842 * 184.99636 * 14 12 2 24 24 H 1.09001 * 109.47013 * 304.65820 * 1 2 3 25 25 H 1.08996 * 109.47190 * 64.65895 * 1 2 3 26 26 H 1.09008 * 109.46952 * 184.66118 * 1 2 3 27 27 H 0.97001 * 120.00410 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.63042 * 248.52093 * 15 14 12 29 29 H 1.09004 * 109.63141 * 9.10608 * 15 14 12 30 30 H 1.08999 * 109.65172 * 294.08449 * 16 15 14 31 31 H 1.09003 * 109.42464 * 173.94382 * 16 15 14 32 32 H 1.09000 * 109.47480 * 179.21082 * 18 17 16 33 33 H 1.08992 * 109.47335 * 299.21184 * 18 17 16 34 34 H 0.96994 * 120.00234 * 359.97438 * 20 19 18 35 35 H 0.97001 * 119.99720 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.49618 * 303.14851 * 22 17 16 37 37 H 1.09000 * 109.49550 * 183.06415 * 22 17 16 38 38 H 1.09007 * 109.62930 * 350.89281 * 23 14 12 39 39 H 1.08998 * 109.63062 * 111.47647 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0323 -0.7103 1.2305 13 8 2.1666 -1.9157 1.2225 14 7 2.3272 -0.0067 2.3416 15 6 2.0694 1.4397 2.4098 16 6 1.2705 1.7270 3.6910 17 7 1.9886 1.1696 4.8449 18 6 1.3515 1.5719 6.1060 19 6 -0.0754 1.0874 6.1248 20 7 -0.8922 1.4364 7.1385 21 8 -0.4887 0.3836 5.2277 22 6 2.0940 -0.2926 4.7514 23 6 2.9210 -0.6638 3.5158 24 1 -0.3633 0.5844 0.8453 25 1 -0.3633 0.4398 -0.9287 26 1 -0.3633 -1.0244 0.0835 27 1 0.7093 1.1617 -3.4844 28 1 3.0159 1.9795 2.4360 29 1 1.4916 1.7501 1.5391 30 1 0.2849 1.2671 3.6193 31 1 1.1615 2.8043 3.8163 32 1 1.8949 1.1343 6.9434 33 1 1.3674 2.6584 6.1907 34 1 -0.5615 1.9990 7.8561 35 1 -1.8105 1.1242 7.1508 36 1 1.0969 -0.7244 4.6649 37 1 2.5822 -0.6801 5.6456 38 1 2.9064 -1.7449 3.3768 39 1 3.9478 -0.3224 3.6464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596947426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:08 Heat of formation + Delta-G solvation = -88.484631 kcal Electronic energy + Delta-G solvation = -21654.913895 eV Core-core repulsion = 18403.521412 eV Total energy + Delta-G solvation = -3251.392483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50320 -40.52627 -38.32791 -35.87676 -35.31509 -34.67299 -32.85280 -31.72520 -29.83598 -27.31893 -26.32826 -25.02270 -23.94732 -22.19448 -21.45803 -19.87688 -18.49302 -18.29013 -17.76851 -17.71596 -17.07607 -16.43206 -16.11221 -16.04162 -15.82364 -15.58219 -15.51789 -14.75150 -14.62659 -14.33668 -13.62793 -13.29617 -13.24530 -13.01275 -12.83568 -12.66664 -12.59599 -12.31060 -12.22868 -12.10682 -12.04160 -11.99597 -11.57644 -11.10532 -10.61805 -10.56075 -10.24636 -9.68518 -9.12662 -8.16574 -6.28488 1.40109 1.42869 1.50882 1.63804 1.88297 2.16922 2.45326 2.68762 2.88877 3.11998 3.81298 4.03574 4.04108 4.09998 4.26714 4.36389 4.48468 4.55727 4.60769 4.65297 4.66255 4.77468 4.82408 4.91706 4.99626 5.02214 5.21159 5.37325 5.62011 5.70746 5.85330 5.88939 5.91159 5.96212 6.16554 6.52081 6.58745 6.75892 7.35266 7.40482 7.47081 8.89122 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.004631 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.386812 B = 6045.287209 C = 6311.444321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.271 1.271 12 C 0.520 3.480 13 O -0.596 6.596 14 N -0.620 5.620 15 C 0.111 3.889 16 C 0.034 3.966 17 N -0.508 5.508 18 C 0.035 3.965 19 C 0.472 3.528 20 N -0.837 5.837 21 O -0.591 6.591 22 C 0.039 3.961 23 C 0.112 3.888 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.267 0.733 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.420 0.580 35 H 0.400 0.600 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 8.892 22.685 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.784 3.216 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.196 1.196 12 C 0.312 3.688 13 O -0.477 6.477 14 N -0.354 5.354 15 C -0.012 4.012 16 C -0.094 4.094 17 N -0.231 5.231 18 C -0.096 4.096 19 C 0.257 3.743 20 N -0.402 5.402 21 O -0.472 6.472 22 C -0.089 4.089 23 C -0.010 4.010 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.252 0.748 35 H 0.230 0.770 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.463 8.164 21.907 23.384 hybrid contribution -1.039 -0.933 -0.662 1.545 sum -0.576 7.232 21.245 22.450 Atomic orbital electron populations 1.21497 0.95958 0.98275 1.01561 1.18798 0.94491 0.96296 0.89409 0.93546 1.21126 1.32151 1.12397 0.91197 0.94136 1.25603 0.95021 0.95710 1.01366 1.69927 1.36781 1.23411 1.24573 0.85606 0.78886 0.78511 0.78612 1.20577 1.19512 1.19637 1.21719 0.74886 0.87210 0.85022 1.90470 1.55843 1.16873 1.84503 1.48335 1.62920 1.10060 1.14058 1.22058 1.01116 0.79444 0.98533 1.22722 0.95895 1.01150 0.89681 1.62373 1.48942 1.09904 1.01842 1.22629 0.87760 1.04907 0.94313 1.22724 0.90979 0.79314 0.81268 1.43928 1.15555 1.54683 1.26000 1.90778 1.78064 1.39951 1.38433 1.22556 0.99498 0.88737 0.98138 1.21689 0.97377 0.97780 0.84172 0.94700 0.90222 0.96857 0.92347 0.89508 0.90007 0.94090 0.87163 0.84463 0.84209 0.74846 0.76992 0.94496 0.87387 0.91585 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.06 8.93 71.98 0.64 -5.41 16 2 C 0.03 1.70 1.83 -12.29 -0.02 1.68 16 3 H 0.05 2.51 6.28 -2.38 -0.01 2.49 16 4 C -0.53 -32.28 8.32 25.60 0.21 -32.07 16 5 H 0.04 2.61 7.23 -2.91 -0.02 2.59 16 6 C 0.02 1.30 5.29 84.65 0.45 1.75 16 7 N -0.91 -52.26 11.30 21.45 0.24 -52.02 16 8 Si 0.96 46.00 29.54 68.60 2.03 48.03 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 C 0.52 27.08 6.70 87.66 0.59 27.67 16 13 O -0.60 -35.22 15.53 -3.04 -0.05 -35.27 16 14 N -0.62 -25.31 3.00 -817.04 -2.45 -27.76 16 15 C 0.11 3.67 6.32 86.51 0.55 4.22 16 16 C 0.03 0.91 5.13 86.54 0.44 1.36 16 17 N -0.51 -11.22 4.83 -898.85 -4.34 -15.56 16 18 C 0.03 0.45 5.84 85.56 0.50 0.95 16 19 C 0.47 8.76 7.50 87.66 0.66 9.42 16 20 N -0.84 -7.91 8.87 -173.53 -1.54 -9.45 16 21 O -0.59 -18.72 12.51 -3.02 -0.04 -18.76 16 22 C 0.04 1.07 5.21 86.39 0.45 1.52 16 23 C 0.11 3.82 6.61 86.35 0.57 4.39 16 24 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 25 H 0.08 4.43 5.96 -2.39 -0.01 4.42 16 26 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 2.99 5.38 -2.39 -0.01 2.98 16 30 H 0.04 1.41 5.69 -2.39 -0.01 1.39 16 31 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16 32 H 0.14 0.96 8.06 -2.39 -0.02 0.94 16 33 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.42 0.51 8.83 -92.71 -0.82 -0.31 16 35 H 0.40 4.01 8.93 -92.71 -0.83 3.18 16 36 H 0.04 1.30 5.78 -2.39 -0.01 1.28 16 37 H 0.11 2.19 8.05 -2.39 -0.02 2.17 16 38 H 0.07 2.55 7.04 -2.38 -0.02 2.54 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -82.32 308.64 -1.67 -83.99 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.56 Total: 11.34 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.04 Total: 15.46 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -8.09 Total: -104.79 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.09 Total: -54.03 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.32 -1.67 -83.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596947426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.494 kcal (2) G-P(sol) polarization free energy of solvation -82.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds