Wall clock time and date at job start Mon Mar 30 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50701 * 109.46972 * 120.00100 * 2 1 3 5 5 H 1.08009 * 120.00040 * 120.00519 * 4 2 1 6 6 C 1.37873 * 120.00015 * 299.99702 * 4 2 1 7 7 N 1.31518 * 120.00051 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00109 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47138 * 60.00042 * 8 6 4 10 10 H 1.48504 * 109.47276 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47356 * 300.00265 * 8 6 4 12 12 C 1.50700 * 109.47351 * 239.99982 * 2 1 3 13 13 O 1.21283 * 120.00327 * 264.23025 * 12 2 1 14 14 N 1.34773 * 119.99904 * 84.23424 * 12 2 1 15 15 C 1.47080 * 120.88034 * 175.15579 * 14 12 2 16 16 C 1.53247 * 108.51594 * 231.15965 * 15 14 12 17 17 N 1.46900 * 109.33662 * 306.16312 * 16 15 14 18 18 C 1.46903 * 110.99858 * 187.25389 * 17 16 15 19 19 C 1.50698 * 109.47222 * 170.00371 * 18 17 16 20 20 N 1.34770 * 120.00306 * 180.27947 * 19 18 17 21 21 O 1.21284 * 120.00114 * 0.02562 * 19 18 17 22 22 C 1.46901 * 111.26843 * 63.11229 * 17 16 15 23 23 C 1.47074 * 120.88278 * 355.12198 * 14 12 2 24 24 H 1.09008 * 109.47329 * 186.13656 * 1 2 3 25 25 H 1.09004 * 109.47504 * 306.13662 * 1 2 3 26 26 H 1.08999 * 109.47182 * 66.13682 * 1 2 3 27 27 H 0.97005 * 119.99849 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.63110 * 111.45135 * 15 14 12 29 29 H 1.09000 * 109.78895 * 350.95631 * 15 14 12 30 30 H 1.08996 * 109.49159 * 186.21204 * 16 15 14 31 31 H 1.08993 * 109.49621 * 66.12224 * 16 15 14 32 32 H 1.09003 * 109.47020 * 50.00855 * 18 17 16 33 33 H 1.09002 * 109.46994 * 290.00288 * 18 17 16 34 34 H 0.97005 * 120.00511 * 179.72569 * 20 19 18 35 35 H 0.97005 * 119.99765 * 359.71922 * 20 19 18 36 36 H 1.08996 * 109.49603 * 56.85027 * 22 17 16 37 37 H 1.09000 * 109.49239 * 176.93161 * 22 17 16 38 38 H 1.08998 * 109.63437 * 248.55471 * 23 14 12 39 39 H 1.09004 * 109.63067 * 9.13228 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0077 10 1 1.8268 -0.4199 5.2205 11 1 1.8280 -2.5199 4.0082 12 6 2.0323 -0.7104 -1.2304 13 8 2.3341 -1.8837 -1.1726 14 7 2.1464 -0.0419 -2.3951 15 6 2.7330 -0.6853 -3.5805 16 6 3.8254 0.2314 -4.1414 17 7 3.2654 1.5694 -4.3741 18 6 4.2308 2.4303 -5.0706 19 6 3.5470 3.6998 -5.5087 20 7 4.2406 4.6428 -6.1765 21 8 2.3715 3.8708 -5.2644 22 6 2.8205 2.1868 -3.1176 23 6 1.6870 1.3501 -2.5147 24 1 -0.3634 -1.0218 0.1099 25 1 -0.3634 0.6060 0.8300 26 1 -0.3633 0.4157 -0.9398 27 1 0.7081 1.1609 3.4844 28 1 1.9606 -0.8381 -4.3342 29 1 3.1680 -1.6452 -3.3021 30 1 4.1951 -0.1767 -5.0820 31 1 4.6454 0.2997 -3.4267 32 1 4.6199 1.9072 -5.9442 33 1 5.0524 2.6739 -4.3970 34 1 3.7995 5.4583 -6.4620 35 1 5.1809 4.5062 -6.3716 36 1 3.6545 2.2277 -2.4171 37 1 2.4615 3.1967 -3.3157 38 1 0.8140 1.3930 -3.1659 39 1 1.4309 1.7372 -1.5284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596947433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:11 Heat of formation + Delta-G solvation = -59.707330 kcal Electronic energy + Delta-G solvation = -21354.090945 eV Core-core repulsion = 18103.946339 eV Total energy + Delta-G solvation = -3250.144606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09938 -39.12793 -37.21718 -34.06622 -33.83414 -33.72786 -31.22667 -30.08052 -28.77168 -25.23362 -25.12005 -23.61658 -22.41455 -20.79164 -20.33959 -18.33488 -17.61075 -16.94331 -16.42315 -15.98274 -15.62859 -15.14702 -14.81506 -14.64565 -14.51842 -14.29141 -14.06903 -13.29784 -13.03272 -12.70488 -12.38307 -12.07871 -11.92430 -11.36264 -11.16565 -11.03993 -10.98315 -10.91365 -10.64278 -10.60264 -10.20213 -10.00907 -9.96617 -9.85885 -8.93855 -8.54513 -8.47382 -8.25190 -7.92740 -6.00317 -4.03110 2.47052 3.11857 3.37319 3.40037 3.44935 3.67835 3.75280 4.00169 4.48852 4.67352 4.89851 5.02051 5.08689 5.19203 5.32730 5.45095 5.45858 5.60033 5.76172 5.86936 6.02638 6.14782 6.26760 6.36248 6.54091 6.72735 6.78741 6.90935 6.98192 7.04321 7.13300 7.18293 7.51581 7.80877 8.01904 8.09255 8.15291 8.43451 9.02069 9.27456 9.61356 11.07501 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.004492 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.771443 B = 6231.612234 C = 6568.629703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.550 6.550 14 N -0.629 5.629 15 C 0.117 3.883 16 C 0.044 3.956 17 N -0.521 5.521 18 C 0.034 3.966 19 C 0.516 3.484 20 N -0.861 5.861 21 O -0.519 6.519 22 C 0.036 3.964 23 C 0.118 3.882 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.401 0.599 35 H 0.399 0.601 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 7.668 -17.193 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.539 4.539 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.316 3.684 13 O -0.426 6.426 14 N -0.365 5.365 15 C -0.007 4.007 16 C -0.084 4.084 17 N -0.246 5.246 18 C -0.097 4.097 19 C 0.300 3.700 20 N -0.426 5.426 21 O -0.393 6.393 22 C -0.092 4.092 23 C -0.006 4.006 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.227 0.773 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.836 6.991 -17.023 19.631 hybrid contribution 1.424 0.096 0.948 1.713 sum 8.260 7.087 -16.075 19.413 Atomic orbital electron populations 1.21701 0.96120 1.01041 0.99781 1.18876 0.94351 0.96503 0.89210 0.93499 1.21043 1.31278 1.12478 0.89132 0.91359 1.24929 0.95102 0.95042 0.98998 1.69879 1.36933 1.23008 1.23612 0.86525 0.79138 0.79848 0.81728 1.20303 1.21332 1.20145 1.22025 0.75268 0.87157 0.83960 1.90511 1.50175 1.16992 1.84926 1.48438 1.63423 1.13823 1.10852 1.21459 0.95233 0.96205 0.87756 1.22535 0.96667 0.88971 1.00256 1.61670 1.37310 1.02002 1.23659 1.21952 0.94367 0.92949 1.00474 1.20609 0.87240 0.84886 0.77285 1.43883 1.14963 1.22452 1.61319 1.90753 1.15797 1.78718 1.54056 1.22713 0.98047 0.99782 0.88650 1.21771 0.95798 0.80812 1.02173 0.94596 0.89177 0.96811 0.92907 0.91721 0.89049 0.89998 0.94198 0.87830 0.91851 0.76818 0.77289 0.94585 0.88258 0.91255 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.64 37.15 0.32 -2.81 16 2 C 0.03 0.81 1.78 -92.93 -0.17 0.65 16 3 H 0.05 1.22 6.50 -51.93 -0.34 0.88 16 4 C -0.50 -14.47 8.33 -34.44 -0.29 -14.76 16 5 H 0.07 2.07 7.01 -52.48 -0.37 1.70 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.38 11.39 55.43 0.63 -24.75 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.58 6.81 -10.99 -0.07 12.51 16 13 O -0.55 -14.81 15.27 5.56 0.08 -14.72 16 14 N -0.63 -12.15 3.01 -172.46 -0.52 -12.67 16 15 C 0.12 1.88 6.58 -3.60 -0.02 1.85 16 16 C 0.04 0.56 5.62 -3.70 -0.02 0.54 16 17 N -0.52 -6.78 4.37 -235.76 -1.03 -7.81 16 18 C 0.03 0.31 5.45 -4.98 -0.03 0.29 16 19 C 0.52 5.32 7.76 -10.99 -0.09 5.23 16 20 N -0.86 -5.01 8.87 31.22 0.28 -4.73 16 21 O -0.52 -7.81 15.17 5.55 0.08 -7.73 16 22 C 0.04 0.54 5.26 -3.70 -0.02 0.52 16 23 C 0.12 2.02 5.91 -3.60 -0.02 2.00 16 24 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 25 H 0.09 2.34 6.26 -51.93 -0.33 2.02 16 26 H 0.01 0.28 7.41 -51.93 -0.38 -0.11 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 30 H 0.08 0.80 7.99 -51.93 -0.41 0.39 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.69 7.97 -51.93 -0.41 0.28 16 33 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.40 2.08 8.93 -40.82 -0.36 1.71 16 35 H 0.40 1.03 8.83 -40.82 -0.36 0.67 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.50 5.76 -51.93 -0.30 1.20 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 1.86 5.27 -51.93 -0.27 1.58 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -35.03 312.57 -6.86 -41.90 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.58 Total: 1.19 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.50 Total: 7.61 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.64 Total: -49.96 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.03 -6.86 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596947433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.811 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds