Wall clock time and date at job start Mon Mar 30 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50701 * 109.46972 * 120.00100 * 2 1 3 5 5 H 1.08009 * 120.00040 * 120.00519 * 4 2 1 6 6 C 1.37873 * 120.00015 * 299.99702 * 4 2 1 7 7 N 1.31518 * 120.00051 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00109 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47138 * 60.00042 * 8 6 4 10 10 H 1.48504 * 109.47276 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47356 * 300.00265 * 8 6 4 12 12 C 1.50700 * 109.47351 * 239.99982 * 2 1 3 13 13 O 1.21283 * 120.00327 * 264.23025 * 12 2 1 14 14 N 1.34773 * 119.99904 * 84.23424 * 12 2 1 15 15 C 1.47080 * 120.88034 * 175.15579 * 14 12 2 16 16 C 1.53247 * 108.51594 * 231.15965 * 15 14 12 17 17 N 1.46900 * 109.33662 * 306.16312 * 16 15 14 18 18 C 1.46903 * 110.99858 * 187.25389 * 17 16 15 19 19 C 1.50698 * 109.47222 * 170.00371 * 18 17 16 20 20 N 1.34770 * 120.00306 * 180.27947 * 19 18 17 21 21 O 1.21284 * 120.00114 * 0.02562 * 19 18 17 22 22 C 1.46901 * 111.26843 * 63.11229 * 17 16 15 23 23 C 1.47074 * 120.88278 * 355.12198 * 14 12 2 24 24 H 1.09008 * 109.47329 * 186.13656 * 1 2 3 25 25 H 1.09004 * 109.47504 * 306.13662 * 1 2 3 26 26 H 1.08999 * 109.47182 * 66.13682 * 1 2 3 27 27 H 0.97005 * 119.99849 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.63110 * 111.45135 * 15 14 12 29 29 H 1.09000 * 109.78895 * 350.95631 * 15 14 12 30 30 H 1.08996 * 109.49159 * 186.21204 * 16 15 14 31 31 H 1.08993 * 109.49621 * 66.12224 * 16 15 14 32 32 H 1.09003 * 109.47020 * 50.00855 * 18 17 16 33 33 H 1.09002 * 109.46994 * 290.00288 * 18 17 16 34 34 H 0.97005 * 120.00511 * 179.72569 * 20 19 18 35 35 H 0.97005 * 119.99765 * 359.71922 * 20 19 18 36 36 H 1.08996 * 109.49603 * 56.85027 * 22 17 16 37 37 H 1.09000 * 109.49239 * 176.93161 * 22 17 16 38 38 H 1.08998 * 109.63437 * 248.55471 * 23 14 12 39 39 H 1.09004 * 109.63067 * 9.13228 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0077 10 1 1.8268 -0.4199 5.2205 11 1 1.8280 -2.5199 4.0082 12 6 2.0323 -0.7104 -1.2304 13 8 2.3341 -1.8837 -1.1726 14 7 2.1464 -0.0419 -2.3951 15 6 2.7330 -0.6853 -3.5805 16 6 3.8254 0.2314 -4.1414 17 7 3.2654 1.5694 -4.3741 18 6 4.2308 2.4303 -5.0706 19 6 3.5470 3.6998 -5.5087 20 7 4.2406 4.6428 -6.1765 21 8 2.3715 3.8708 -5.2644 22 6 2.8205 2.1868 -3.1176 23 6 1.6870 1.3501 -2.5147 24 1 -0.3634 -1.0218 0.1099 25 1 -0.3634 0.6060 0.8300 26 1 -0.3633 0.4157 -0.9398 27 1 0.7081 1.1609 3.4844 28 1 1.9606 -0.8381 -4.3342 29 1 3.1680 -1.6452 -3.3021 30 1 4.1951 -0.1767 -5.0820 31 1 4.6454 0.2997 -3.4267 32 1 4.6199 1.9072 -5.9442 33 1 5.0524 2.6739 -4.3970 34 1 3.7995 5.4583 -6.4620 35 1 5.1809 4.5062 -6.3716 36 1 3.6545 2.2277 -2.4171 37 1 2.4615 3.1967 -3.3157 38 1 0.8140 1.3930 -3.1659 39 1 1.4309 1.7372 -1.5284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596947433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:10 Heat of formation + Delta-G solvation = -88.619158 kcal Electronic energy + Delta-G solvation = -21355.344656 eV Core-core repulsion = 18103.946339 eV Total energy + Delta-G solvation = -3251.398317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29615 -40.41622 -38.56797 -35.86537 -35.39785 -34.55804 -32.86839 -31.73930 -29.88445 -27.27591 -26.46711 -24.92311 -24.10390 -21.92056 -21.42864 -19.89323 -18.50179 -18.28330 -17.81205 -17.60737 -16.97697 -16.50984 -16.29714 -16.04530 -15.62996 -15.54490 -15.37527 -14.81488 -14.57756 -14.28074 -13.98460 -13.46351 -13.18805 -12.97268 -12.83935 -12.69172 -12.68009 -12.39419 -12.22750 -12.18815 -12.17078 -12.01097 -11.06253 -10.88614 -10.60893 -10.54150 -10.25178 -9.70206 -9.26620 -8.16048 -6.26836 1.40256 1.42699 1.50811 1.72778 1.87722 2.11567 2.42880 2.48159 3.05068 3.13719 3.79741 3.97109 4.02294 4.12132 4.22742 4.30232 4.35909 4.46925 4.51008 4.62300 4.70763 4.77581 4.85823 4.86050 4.92953 5.00253 5.07254 5.42083 5.62410 5.71431 5.84428 5.91784 5.94833 6.01972 6.17119 6.55711 6.58747 6.78871 7.36902 7.46381 7.47181 8.90213 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.004492 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.771443 B = 6231.612234 C = 6568.629703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.589 6.589 14 N -0.621 5.621 15 C 0.110 3.890 16 C 0.054 3.946 17 N -0.532 5.532 18 C 0.034 3.966 19 C 0.512 3.488 20 N -0.838 5.838 21 O -0.575 6.575 22 C 0.048 3.952 23 C 0.116 3.884 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.034 0.966 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.407 0.593 35 H 0.418 0.582 36 H 0.029 0.971 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 8.452 -18.746 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.313 3.687 13 O -0.469 6.469 14 N -0.355 5.355 15 C -0.013 4.013 16 C -0.074 4.074 17 N -0.257 5.257 18 C -0.097 4.097 19 C 0.297 3.703 20 N -0.403 5.403 21 O -0.454 6.454 22 C -0.080 4.080 23 C -0.007 4.007 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.052 0.948 32 H 0.157 0.843 33 H 0.100 0.900 34 H 0.238 0.762 35 H 0.249 0.751 36 H 0.047 0.953 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.344 7.838 -18.646 21.880 hybrid contribution 0.997 -0.068 1.321 1.657 sum 9.341 7.770 -17.325 21.161 Atomic orbital electron populations 1.21508 0.95438 0.99759 1.00528 1.18788 0.94928 0.95933 0.89571 0.94113 1.21184 1.32126 1.12480 0.91135 0.93721 1.25604 0.95079 0.95684 1.01400 1.69958 1.36930 1.23494 1.24468 0.85630 0.78789 0.78635 0.78700 1.19804 1.19786 1.20360 1.21631 0.75407 0.86636 0.84986 1.90480 1.52232 1.18381 1.85784 1.48371 1.62170 1.14421 1.10509 1.21731 0.96611 0.96465 0.86469 1.22477 0.94736 0.88347 1.01812 1.61591 1.39180 1.02592 1.22384 1.22108 0.93643 0.92278 1.01651 1.20856 0.86661 0.85698 0.77083 1.43689 1.15765 1.21557 1.59328 1.90738 1.18165 1.79903 1.56607 1.22484 0.96800 0.99213 0.89520 1.21855 0.97273 0.79868 1.01716 0.96177 0.90828 0.94038 0.92492 0.90479 0.90382 0.85949 0.94811 0.84318 0.89975 0.76195 0.75073 0.95292 0.88312 0.90572 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.70 8.64 71.98 0.62 -5.07 16 2 C 0.03 1.53 1.78 -12.29 -0.02 1.50 16 3 H 0.04 2.19 6.50 -2.39 -0.02 2.17 16 4 C -0.53 -31.58 8.33 25.60 0.21 -31.37 16 5 H 0.04 2.81 7.01 -2.91 -0.02 2.79 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.95 11.39 21.45 0.24 -51.71 16 8 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.52 25.68 6.81 87.66 0.60 26.28 16 13 O -0.59 -32.71 15.27 -3.04 -0.05 -32.76 16 14 N -0.62 -23.95 3.01 -817.93 -2.46 -26.41 16 15 C 0.11 3.39 6.58 86.35 0.57 3.95 16 16 C 0.05 1.23 5.62 86.39 0.49 1.71 16 17 N -0.53 -12.47 4.37 -899.80 -3.93 -16.41 16 18 C 0.03 0.50 5.45 85.56 0.47 0.96 16 19 C 0.51 9.24 7.76 87.66 0.68 9.92 16 20 N -0.84 -7.18 8.87 -173.54 -1.54 -8.72 16 21 O -0.58 -16.61 15.17 -3.04 -0.05 -16.66 16 22 C 0.05 1.39 5.26 86.38 0.45 1.85 16 23 C 0.12 3.95 5.91 86.35 0.51 4.46 16 24 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.07 3.90 6.26 -2.39 -0.01 3.89 16 26 H 0.04 1.77 7.41 -2.39 -0.02 1.75 16 27 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 2.64 7.11 -2.39 -0.02 2.62 16 30 H 0.12 1.83 7.99 -2.39 -0.02 1.81 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.14 1.11 7.97 -2.39 -0.02 1.09 16 33 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 34 H 0.41 3.18 8.93 -92.70 -0.83 2.35 16 35 H 0.42 0.54 8.83 -92.70 -0.82 -0.28 16 36 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 2.92 5.76 -2.39 -0.01 2.90 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 3.16 5.27 -2.39 -0.01 3.15 16 Total: -1.00 -77.95 312.57 -1.29 -79.25 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.56 Total: 10.10 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 5.02 Total: 15.88 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -7.69 Total: -103.25 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.09 Total: -49.42 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.95 -1.29 -79.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596947433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.374 kcal (2) G-P(sol) polarization free energy of solvation -77.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds