Wall clock time and date at job start Mon Mar 30 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99807 * 2 1 4 4 O 1.20827 * 120.00063 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99777 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.49849 * 299.93920 * 5 3 2 7 7 C 1.53042 * 109.49759 * 60.00511 * 5 3 2 8 8 C 1.53039 * 109.53648 * 181.34607 * 7 5 3 9 9 C 1.53196 * 109.31571 * 298.63333 * 8 7 5 10 10 N 1.46922 * 108.77305 * 54.63545 * 9 8 7 11 11 C 1.34781 * 120.63312 * 126.37157 * 10 9 8 12 12 O 1.21279 * 120.00116 * 184.03168 * 11 10 9 13 13 C 1.50697 * 119.99468 * 4.02666 * 11 10 9 14 14 H 1.08997 * 109.47385 * 322.83586 * 13 11 10 15 15 C 1.53006 * 109.47105 * 82.83744 * 13 11 10 16 16 C 1.50702 * 109.47032 * 202.83624 * 13 11 10 17 17 H 1.08000 * 120.00037 * 354.44722 * 16 13 11 18 18 C 1.37877 * 120.00004 * 174.45446 * 16 13 11 19 19 N 1.31510 * 119.99935 * 163.79679 * 18 16 13 20 20 Si 1.86801 * 120.00156 * 343.79130 * 18 16 13 21 21 H 1.48502 * 109.47296 * 270.00637 * 20 18 16 22 22 H 1.48500 * 109.47565 * 150.00200 * 20 18 16 23 23 H 1.48498 * 109.46934 * 30.00337 * 20 18 16 24 24 C 1.46930 * 118.74042 * 306.64637 * 10 9 8 25 25 H 1.09004 * 109.46453 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47088 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.46783 * 60.00096 * 1 2 3 28 28 H 1.09000 * 109.45937 * 61.32523 * 7 5 3 29 29 H 1.09001 * 109.45840 * 301.36800 * 7 5 3 30 30 H 1.08995 * 109.49760 * 178.68360 * 8 7 5 31 31 H 1.08999 * 109.49999 * 58.58965 * 8 7 5 32 32 H 1.08996 * 109.58263 * 294.85096 * 9 8 7 33 33 H 1.09000 * 109.70686 * 174.49211 * 9 8 7 34 34 H 1.08996 * 109.46899 * 174.62160 * 15 13 11 35 35 H 1.08995 * 109.46823 * 294.62031 * 15 13 11 36 36 H 1.08999 * 109.47030 * 54.61906 * 15 13 11 37 37 H 0.97002 * 120.00242 * 354.90108 * 19 18 16 38 38 H 1.09002 * 109.58543 * 173.14826 * 24 10 9 39 39 H 1.08998 * 109.58394 * 293.56644 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9561 0.7820 0.8912 7 6 4.1147 0.5812 -1.2485 8 6 5.6441 0.6313 -1.2320 9 6 6.1034 2.0927 -1.2497 10 7 5.4643 2.8028 -0.1334 11 6 6.2053 3.4949 0.7545 12 8 5.6741 4.0157 1.7123 13 6 7.6939 3.6215 0.5571 14 1 8.0878 2.6881 0.1551 15 6 7.9834 4.7609 -0.4222 16 6 8.3528 3.9165 1.8799 17 1 7.7479 4.0924 2.7572 18 6 9.7279 3.9619 1.9703 19 7 10.3001 4.5207 3.0142 20 14 10.7780 3.2297 0.6099 21 1 11.0535 1.8019 0.9114 22 1 12.0604 3.9729 0.5200 23 1 10.0549 3.3320 -0.6830 24 6 4.0025 2.7389 0.0001 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.7442 1.0898 -2.1385 29 1 3.7855 -0.4579 -1.2608 30 1 6.0345 0.1167 -2.1099 31 1 6.0144 0.1445 -0.3298 32 1 5.8118 2.5559 -2.1922 33 1 7.1869 2.1389 -1.1396 34 1 9.0602 4.9153 -0.4919 35 1 7.5889 4.5041 -1.4052 36 1 7.5075 5.6750 -0.0671 37 1 9.7580 4.9660 3.6841 38 1 3.7002 3.2093 0.9358 39 1 3.5361 3.2560 -0.8385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597088865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:47 Heat of formation + Delta-G solvation = -128.514375 kcal Electronic energy + Delta-G solvation = -21436.651166 eV Core-core repulsion = 18151.230112 eV Total energy + Delta-G solvation = -3285.421054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90133 -39.51873 -37.15974 -36.48857 -33.95004 -32.85451 -31.46593 -30.83995 -28.03941 -25.47270 -24.80895 -24.48057 -22.16830 -21.52738 -20.13296 -18.58514 -17.59797 -17.35703 -16.85307 -16.58897 -16.20009 -15.24629 -14.85263 -14.37664 -14.22616 -13.85945 -13.68933 -13.29801 -13.03204 -12.97713 -12.71256 -12.51636 -12.33514 -11.73918 -11.68283 -11.38925 -11.20276 -11.13898 -11.01910 -10.90390 -10.69206 -10.55948 -10.42666 -10.20931 -9.70763 -8.84825 -8.71732 -8.29771 -8.24245 -6.44972 -4.04655 2.03349 2.44616 3.35754 3.38001 3.50288 3.51714 3.55570 4.40047 4.48821 4.58429 4.66905 4.85713 4.93248 4.95919 5.01317 5.19615 5.26247 5.27213 5.42688 5.46304 5.61793 5.70784 5.83272 5.86693 5.89742 6.10708 6.15408 6.21666 6.23957 6.45107 6.54789 6.79171 6.94610 7.22794 7.56318 7.74934 8.14122 8.46566 9.00722 9.05330 9.63897 10.95185 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.004739 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.748871 B = 5907.124397 C = 6249.114443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.504 6.504 5 C -0.096 4.096 6 H 0.114 0.886 7 C -0.108 4.108 8 C -0.135 4.135 9 C 0.102 3.898 10 N -0.627 5.627 11 C 0.532 3.468 12 O -0.535 6.535 13 C 0.006 3.994 14 H 0.042 0.958 15 C -0.136 4.136 16 C -0.589 4.589 17 H 0.071 0.929 18 C 0.031 3.969 19 N -0.904 5.904 20 Si 1.040 2.960 21 H -0.285 1.285 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.128 3.872 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.048 0.952 37 H 0.271 0.729 38 H 0.097 0.903 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 -11.524 -12.661 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.391 6.391 5 C -0.116 4.116 6 H 0.132 0.868 7 C -0.145 4.145 8 C -0.173 4.173 9 C -0.021 4.021 10 N -0.363 5.363 11 C 0.323 3.677 12 O -0.409 6.409 13 C -0.016 4.016 14 H 0.060 0.940 15 C -0.194 4.194 16 C -0.627 4.627 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.538 5.538 20 Si 0.868 3.132 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.005 3.995 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.792 -11.211 -12.540 21.132 hybrid contribution -1.934 0.273 0.487 2.013 sum -14.726 -10.938 -12.053 21.949 Atomic orbital electron populations 1.23263 0.76476 1.03602 1.02589 1.86514 1.23309 1.33528 1.84135 1.23712 0.91769 0.81283 0.71960 1.90682 1.67140 1.36305 1.44932 1.21436 0.86739 1.00672 1.02760 0.86796 1.21504 0.96477 1.00922 0.95618 1.21962 0.94616 0.97323 1.03440 1.21815 0.99707 0.91126 0.89453 1.48364 1.05554 1.53227 1.29180 1.21579 0.90479 0.75596 0.80036 1.90562 1.73792 1.46991 1.29595 1.19252 0.87332 0.95937 0.99049 0.94006 1.22078 1.01620 0.99514 0.96195 1.21947 0.93418 1.53581 0.93800 0.91061 1.25752 0.95701 0.94991 1.00910 1.70766 1.39101 1.31966 1.11948 0.84158 0.76133 0.76920 0.75991 1.21198 1.21059 1.19719 1.21114 0.81727 0.92297 1.04393 0.88131 0.91862 0.91935 0.91254 0.90369 0.90054 0.90721 0.91776 0.88341 0.92218 0.95339 0.93250 0.91931 0.88453 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.95 10.44 -39.27 -0.41 -4.36 16 3 C 0.47 6.10 7.26 36.01 0.26 6.36 16 4 O -0.50 -7.87 15.67 -18.75 -0.29 -8.16 16 5 C -0.10 -1.21 2.76 -91.87 -0.25 -1.46 16 6 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.11 -1.06 5.11 -26.69 -0.14 -1.20 16 8 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 9 C 0.10 1.35 6.03 -3.71 -0.02 1.32 16 10 N -0.63 -10.83 2.98 -173.03 -0.52 -11.35 16 11 C 0.53 12.03 6.82 -10.98 -0.07 11.95 16 12 O -0.53 -14.28 15.15 5.56 0.08 -14.20 16 13 C 0.01 0.14 1.36 -92.92 -0.13 0.01 16 14 H 0.04 0.90 4.79 -51.93 -0.25 0.65 16 15 C -0.14 -2.88 8.47 37.16 0.31 -2.57 16 16 C -0.59 -16.94 8.64 -34.44 -0.30 -17.24 16 17 H 0.07 2.34 7.19 -52.49 -0.38 1.96 16 18 C 0.03 0.90 5.32 -17.82 -0.09 0.80 16 19 N -0.90 -27.94 13.69 55.43 0.76 -27.19 16 20 Si 1.04 23.88 26.20 -169.99 -4.45 19.43 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -5.43 5.58 56.52 0.32 -5.11 16 24 C 0.13 2.02 5.06 -3.93 -0.02 2.00 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.38 5.41 -51.93 -0.28 1.10 16 34 H 0.06 1.27 5.14 -51.93 -0.27 1.01 16 35 H 0.03 0.49 7.86 -51.93 -0.41 0.08 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.27 8.47 8.73 -40.82 -0.36 8.12 16 38 H 0.10 1.80 7.00 -51.93 -0.36 1.44 16 39 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -34.75 312.79 -5.48 -40.23 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.82 Total: 1.10 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.45 Total: -0.22 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.24 Total: -38.53 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.62 Total: -26.72 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.45 Total: 19.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.75 -5.48 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597088865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.289 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds