Wall clock time and date at job start Mon Mar 30 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99807 * 2 1 4 4 O 1.20827 * 120.00063 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99777 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.49849 * 299.93920 * 5 3 2 7 7 C 1.53042 * 109.49759 * 60.00511 * 5 3 2 8 8 C 1.53039 * 109.53648 * 181.34607 * 7 5 3 9 9 C 1.53196 * 109.31571 * 298.63333 * 8 7 5 10 10 N 1.46922 * 108.77305 * 54.63545 * 9 8 7 11 11 C 1.34781 * 120.63312 * 126.37157 * 10 9 8 12 12 O 1.21279 * 120.00116 * 184.03168 * 11 10 9 13 13 C 1.50697 * 119.99468 * 4.02666 * 11 10 9 14 14 H 1.08997 * 109.47385 * 322.83586 * 13 11 10 15 15 C 1.53006 * 109.47105 * 82.83744 * 13 11 10 16 16 C 1.50702 * 109.47032 * 202.83624 * 13 11 10 17 17 H 1.08000 * 120.00037 * 354.44722 * 16 13 11 18 18 C 1.37877 * 120.00004 * 174.45446 * 16 13 11 19 19 N 1.31510 * 119.99935 * 163.79679 * 18 16 13 20 20 Si 1.86801 * 120.00156 * 343.79130 * 18 16 13 21 21 H 1.48502 * 109.47296 * 270.00637 * 20 18 16 22 22 H 1.48500 * 109.47565 * 150.00200 * 20 18 16 23 23 H 1.48498 * 109.46934 * 30.00337 * 20 18 16 24 24 C 1.46930 * 118.74042 * 306.64637 * 10 9 8 25 25 H 1.09004 * 109.46453 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47088 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.46783 * 60.00096 * 1 2 3 28 28 H 1.09000 * 109.45937 * 61.32523 * 7 5 3 29 29 H 1.09001 * 109.45840 * 301.36800 * 7 5 3 30 30 H 1.08995 * 109.49760 * 178.68360 * 8 7 5 31 31 H 1.08999 * 109.49999 * 58.58965 * 8 7 5 32 32 H 1.08996 * 109.58263 * 294.85096 * 9 8 7 33 33 H 1.09000 * 109.70686 * 174.49211 * 9 8 7 34 34 H 1.08996 * 109.46899 * 174.62160 * 15 13 11 35 35 H 1.08995 * 109.46823 * 294.62031 * 15 13 11 36 36 H 1.08999 * 109.47030 * 54.61906 * 15 13 11 37 37 H 0.97002 * 120.00242 * 354.90108 * 19 18 16 38 38 H 1.09002 * 109.58543 * 173.14826 * 24 10 9 39 39 H 1.08998 * 109.58394 * 293.56644 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9561 0.7820 0.8912 7 6 4.1147 0.5812 -1.2485 8 6 5.6441 0.6313 -1.2320 9 6 6.1034 2.0927 -1.2497 10 7 5.4643 2.8028 -0.1334 11 6 6.2053 3.4949 0.7545 12 8 5.6741 4.0157 1.7123 13 6 7.6939 3.6215 0.5571 14 1 8.0878 2.6881 0.1551 15 6 7.9834 4.7609 -0.4222 16 6 8.3528 3.9165 1.8799 17 1 7.7479 4.0924 2.7572 18 6 9.7279 3.9619 1.9703 19 7 10.3001 4.5207 3.0142 20 14 10.7780 3.2297 0.6099 21 1 11.0535 1.8019 0.9114 22 1 12.0604 3.9729 0.5200 23 1 10.0549 3.3320 -0.6830 24 6 4.0025 2.7389 0.0001 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.7442 1.0898 -2.1385 29 1 3.7855 -0.4579 -1.2608 30 1 6.0345 0.1167 -2.1099 31 1 6.0144 0.1445 -0.3298 32 1 5.8118 2.5559 -2.1922 33 1 7.1869 2.1389 -1.1396 34 1 9.0602 4.9153 -0.4919 35 1 7.5889 4.5041 -1.4052 36 1 7.5075 5.6750 -0.0671 37 1 9.7580 4.9660 3.6841 38 1 3.7002 3.2093 0.9358 39 1 3.5361 3.2560 -0.8385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597088865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:47 Heat of formation + Delta-G solvation = -153.473266 kcal Electronic energy + Delta-G solvation = -21437.733465 eV Core-core repulsion = 18151.230112 eV Total energy + Delta-G solvation = -3286.503353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96674 -40.96266 -38.45922 -37.54247 -35.92159 -34.29344 -33.00684 -32.26189 -28.81850 -26.90778 -26.66790 -25.54792 -23.73558 -22.59101 -21.29828 -20.06229 -19.37141 -18.65725 -18.19726 -17.62278 -17.41124 -16.76539 -16.14700 -15.58751 -15.47873 -15.20519 -14.84327 -14.68951 -14.57840 -14.10649 -14.01232 -13.73645 -13.69958 -13.27743 -13.10807 -12.95740 -12.54775 -12.41193 -12.23996 -12.00217 -11.93420 -11.83594 -11.68059 -11.40797 -11.37861 -10.97979 -10.49454 -10.46012 -9.66913 -8.77164 -6.37705 1.02426 1.47469 1.52909 1.61234 1.77130 1.80500 2.19403 2.58611 3.08449 3.38818 3.63290 3.72014 3.96679 4.06812 4.10341 4.17441 4.28428 4.30173 4.39498 4.52273 4.60530 4.67751 4.69216 4.74605 4.77620 4.83563 4.90553 5.05303 5.11215 5.13224 5.24794 5.38066 5.49525 5.57539 5.85436 6.03467 6.49508 6.57682 6.59142 7.34052 7.44623 8.61748 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.004739 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.748871 B = 5907.124397 C = 6249.114443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.537 6.537 5 C -0.091 4.091 6 H 0.109 0.891 7 C -0.100 4.100 8 C -0.129 4.129 9 C 0.087 3.913 10 N -0.614 5.614 11 C 0.524 3.476 12 O -0.597 6.597 13 C 0.004 3.996 14 H 0.077 0.923 15 C -0.132 4.132 16 C -0.602 4.602 17 H 0.005 0.995 18 C -0.023 4.023 19 N -0.938 5.938 20 Si 1.086 2.914 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.214 1.214 24 C 0.129 3.871 25 H 0.136 0.864 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.247 0.753 38 H 0.056 0.944 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 -14.502 -17.235 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.320 3.680 4 O -0.427 6.427 5 C -0.111 4.111 6 H 0.127 0.873 7 C -0.138 4.138 8 C -0.167 4.167 9 C -0.034 4.034 10 N -0.348 5.348 11 C 0.315 3.685 12 O -0.477 6.477 13 C -0.018 4.018 14 H 0.094 0.906 15 C -0.190 4.190 16 C -0.639 4.639 17 H 0.024 0.976 18 C -0.220 4.220 19 N -0.574 5.574 20 Si 0.904 3.096 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.136 1.136 24 C 0.005 3.995 25 H 0.154 0.846 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.913 -14.245 -17.165 25.774 hybrid contribution -2.080 1.182 1.983 3.107 sum -14.992 -13.063 -15.183 25.019 Atomic orbital electron populations 1.23590 0.74639 1.05906 1.02501 1.86496 1.25040 1.32076 1.83479 1.23705 0.91821 0.81393 0.71092 1.90677 1.67850 1.37504 1.46683 1.21342 0.86883 0.98370 1.04551 0.87348 1.21552 0.96186 1.01946 0.94096 1.21972 0.94662 0.95175 1.04850 1.22296 0.99454 0.92936 0.88720 1.48285 1.06035 1.51649 1.28847 1.21506 0.90733 0.75985 0.80233 1.90541 1.74694 1.49983 1.32466 1.19226 0.87728 0.98218 0.96634 0.90563 1.21992 1.01814 0.97413 0.97783 1.22043 0.93669 1.53537 0.94689 0.97617 1.27649 0.97570 0.94135 1.02607 1.70938 1.38906 1.34382 1.13140 0.83708 0.74397 0.76641 0.74902 1.19285 1.21505 1.13611 1.21093 0.80780 0.94749 1.02829 0.84629 0.92542 0.91545 0.89796 0.88090 0.86061 0.91766 0.88625 0.88509 0.91965 0.90359 0.95657 0.94478 0.92487 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.99 10.44 -51.45 -0.54 -7.53 16 3 C 0.48 11.72 7.26 71.24 0.52 12.24 16 4 O -0.54 -16.66 15.67 21.96 0.34 -16.31 16 5 C -0.09 -2.14 2.76 -11.60 -0.03 -2.18 16 6 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 7 C -0.10 -1.53 5.11 30.62 0.16 -1.37 16 8 C -0.13 -1.98 6.08 30.67 0.19 -1.79 16 9 C 0.09 1.88 6.03 86.36 0.52 2.41 16 10 N -0.61 -20.34 2.98 -819.73 -2.44 -22.78 16 11 C 0.52 24.09 6.82 87.66 0.60 24.69 16 12 O -0.60 -34.13 15.15 -3.03 -0.05 -34.18 16 13 C 0.00 0.16 1.36 -12.28 -0.02 0.15 16 14 H 0.08 3.00 4.79 -2.39 -0.01 2.99 16 15 C -0.13 -5.28 8.47 71.98 0.61 -4.67 16 16 C -0.60 -36.05 8.64 25.60 0.22 -35.83 16 17 H 0.01 0.39 7.19 -2.91 -0.02 0.37 16 18 C -0.02 -1.36 5.32 84.66 0.45 -0.91 16 19 N -0.94 -60.76 13.69 21.45 0.29 -60.47 16 20 Si 1.09 46.00 26.20 68.60 1.80 47.80 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.21 -7.05 5.58 99.48 0.56 -6.50 16 24 C 0.13 4.01 5.06 86.22 0.44 4.44 16 25 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 27 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 2.17 5.41 -2.39 -0.01 2.15 16 34 H 0.06 2.44 5.14 -2.39 -0.01 2.43 16 35 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.25 16.67 8.73 -92.71 -0.81 15.87 16 38 H 0.06 2.24 7.00 -2.39 -0.02 2.22 16 39 H 0.08 2.35 7.95 -2.39 -0.02 2.33 16 Total: -1.00 -84.98 312.79 5.11 -79.88 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.85 Total: 14.85 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.84 Total: -1.27 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.15 Total: -83.24 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -0.24 Total: -58.02 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.80 Total: 47.80 kcal Total: -84.98 5.11 -79.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597088865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.596 kcal (2) G-P(sol) polarization free energy of solvation -84.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds