Wall clock time and date at job start Mon Mar 30 2020 04:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99654 * 2 1 4 4 O 1.20828 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00012 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47281 * 204.99718 * 5 3 2 7 7 N 1.46506 * 109.46871 * 324.99087 * 5 3 2 8 8 C 1.34773 * 119.99778 * 180.02562 * 7 5 3 9 9 O 1.21282 * 120.00561 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99914 * 180.02562 * 8 7 5 11 11 H 1.09005 * 109.46877 * 60.00048 * 10 8 7 12 12 C 1.53000 * 109.47003 * 300.00351 * 10 8 7 13 13 C 1.50696 * 109.47007 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.53000 * 109.47712 * 84.99236 * 5 3 2 22 22 C 1.53001 * 117.49651 * 123.74747 * 21 5 3 23 23 C 1.53002 * 117.49598 * 55.08769 * 21 5 3 24 24 H 1.08997 * 109.47871 * 60.00240 * 1 2 3 25 25 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46976 * 300.00136 * 1 2 3 27 27 H 1.08996 * 109.47073 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46472 * 299.99965 * 6 5 3 29 29 H 1.09002 * 109.47110 * 59.99137 * 6 5 3 30 30 H 0.96990 * 119.99855 * 0.02562 * 7 5 3 31 31 H 1.08996 * 109.47024 * 59.99731 * 12 10 8 32 32 H 1.08998 * 109.46637 * 179.97438 * 12 10 8 33 33 H 1.08997 * 109.46749 * 299.99588 * 12 10 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.55101 * 269.41863 * 21 5 3 36 36 H 1.09003 * 117.50350 * 0.02562 * 22 21 5 37 37 H 1.08997 * 117.49752 * 145.02660 * 22 21 5 38 38 H 1.08996 * 117.50082 * 214.97769 * 23 21 5 39 39 H 1.09003 * 117.49819 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0073 2.6073 0.6091 7 7 4.1134 0.1706 0.7914 8 6 5.4472 0.0389 0.9326 9 8 6.1946 0.8348 0.4044 10 6 6.0102 -1.0975 1.7468 11 1 5.6964 -2.0464 1.3118 12 6 5.4942 -0.9998 3.1839 13 6 7.5151 -1.0184 1.7464 14 1 8.0140 -0.2245 1.2105 15 6 8.2551 -1.9598 2.4301 16 7 9.5684 -1.8905 2.4302 17 14 7.3921 -3.3333 3.3564 18 1 7.1212 -2.8968 4.7497 19 1 6.1097 -3.6565 2.6808 20 1 8.2593 -4.5387 3.3751 21 6 4.0817 1.1763 -1.4378 22 6 4.9695 2.3125 -1.9494 23 6 3.5313 2.1770 -2.4559 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 5.0958 2.6641 0.6091 28 1 3.6001 3.4289 0.0198 29 1 3.6400 2.6776 1.6330 30 1 3.5158 -0.4656 1.2141 31 1 4.4057 -1.0571 3.1838 32 1 5.9010 -1.8219 3.7726 33 1 5.8080 -0.0509 3.6188 34 1 10.0889 -2.5526 2.9115 35 1 4.3008 0.1685 -1.7904 36 1 5.1867 3.1301 -1.2620 37 1 5.7724 2.0522 -2.6390 38 1 3.3888 1.8277 -3.4785 39 1 2.8023 2.9060 -2.1017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597267002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:33 Heat of formation + Delta-G solvation = -107.084652 kcal Electronic energy + Delta-G solvation = -21854.618746 eV Core-core repulsion = 18570.126954 eV Total energy + Delta-G solvation = -3284.491792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26258 -40.62938 -38.72529 -37.50496 -35.72805 -35.43484 -33.34403 -30.98509 -29.00390 -27.09445 -26.54242 -24.59915 -23.58179 -23.00612 -21.33257 -20.20236 -19.19496 -18.69908 -18.16933 -17.95642 -17.03450 -16.87303 -16.60161 -16.09841 -15.43363 -15.26497 -14.88017 -14.47724 -14.29988 -14.15267 -14.00486 -13.45904 -13.30643 -13.14767 -13.11198 -12.81698 -12.63522 -12.49226 -12.26122 -12.09272 -11.86149 -11.81310 -11.47714 -11.44255 -11.16775 -11.09671 -10.72643 -10.23213 -10.11635 -8.22791 -6.29487 0.87633 1.36171 1.42201 1.48973 1.53037 1.91021 2.16802 2.37643 2.78707 3.11246 3.51001 3.59262 3.82482 3.95801 4.08553 4.14811 4.29439 4.32340 4.35697 4.46842 4.59067 4.64486 4.68649 4.71713 4.74478 4.80551 4.97255 5.00478 5.06060 5.16790 5.20245 5.23879 5.42782 5.48348 5.56821 6.29484 6.50854 6.67999 6.88526 7.31452 7.52638 8.94466 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.005933 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.210798 B = 4718.392021 C = 5457.923949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.481 3.519 4 O -0.511 6.511 5 C 0.222 3.778 6 C -0.153 4.153 7 N -0.719 5.719 8 C 0.535 3.465 9 O -0.549 6.549 10 C -0.008 4.008 11 H 0.068 0.932 12 C -0.142 4.142 13 C -0.513 4.513 14 H 0.036 0.964 15 C 0.007 3.993 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.263 1.263 19 H -0.231 1.231 20 H -0.302 1.302 21 C -0.172 4.172 22 C -0.156 4.156 23 C -0.159 4.159 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.415 0.585 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.446 2.619 -4.656 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.323 3.677 4 O -0.398 6.398 5 C 0.135 3.865 6 C -0.211 4.211 7 N -0.376 5.376 8 C 0.324 3.676 9 O -0.424 6.424 10 C -0.029 4.029 11 H 0.085 0.915 12 C -0.199 4.199 13 C -0.551 4.551 14 H 0.054 0.946 15 C -0.190 4.190 16 N -0.593 5.593 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.154 1.154 20 H -0.230 1.230 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.197 4.197 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.252 0.748 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.013 3.418 -4.983 21.865 hybrid contribution 0.170 -0.771 0.606 0.996 sum -20.843 2.647 -4.376 21.461 Atomic orbital electron populations 1.23660 0.74023 1.06076 1.02925 1.86515 1.25582 1.32003 1.83082 1.23337 0.90672 0.81995 0.71648 1.90652 1.66486 1.36858 1.45821 1.19568 0.84722 0.90002 0.92250 1.22211 1.03489 0.94285 1.01086 1.46026 1.07069 1.30385 1.54128 1.20897 0.81040 0.86141 0.79550 1.90566 1.59228 1.44447 1.48208 1.19264 0.95270 0.94327 0.94085 0.91453 1.22034 1.00715 1.01342 0.95793 1.21082 0.90192 1.12263 1.31599 0.94552 1.25970 0.95294 1.00441 0.97247 1.70074 1.07158 1.37503 1.44568 0.85784 0.79312 0.77308 0.79627 1.18928 1.15381 1.23027 1.22399 1.07373 0.97324 0.92031 1.23008 0.93802 0.99646 1.02874 1.23188 0.96907 1.00664 0.98892 0.91517 0.84859 0.91450 0.90319 0.89703 0.91804 0.74789 0.89964 0.93739 0.93321 0.92563 0.87649 0.88266 0.88915 0.86641 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.53 9.78 -51.45 -0.50 -8.03 16 3 C 0.48 12.22 6.21 71.23 0.44 12.66 16 4 O -0.51 -14.16 15.46 21.96 0.34 -13.82 16 5 C 0.22 6.36 0.87 2.86 0.00 6.37 16 6 C -0.15 -4.51 6.51 71.98 0.47 -4.04 16 7 N -0.72 -22.11 4.93 -426.30 -2.10 -24.22 16 8 C 0.54 21.92 6.57 87.66 0.58 22.50 16 9 O -0.55 -26.46 12.16 -3.03 -0.04 -26.50 16 10 C -0.01 -0.35 2.23 -12.28 -0.03 -0.37 16 11 H 0.07 2.79 7.20 -2.38 -0.02 2.77 16 12 C -0.14 -5.26 8.57 71.98 0.62 -4.64 16 13 C -0.51 -29.71 8.96 25.60 0.23 -29.48 16 14 H 0.04 2.47 7.00 -2.91 -0.02 2.45 16 15 C 0.01 0.39 5.45 84.66 0.46 0.85 16 16 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 17 Si 0.95 42.58 24.37 68.60 1.67 44.25 16 18 H -0.26 -11.06 6.87 99.48 0.68 -10.38 16 19 H -0.23 -8.89 6.53 99.48 0.65 -8.24 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 C -0.17 -4.92 4.26 -10.79 -0.05 -4.97 16 22 C -0.16 -4.40 8.91 30.62 0.27 -4.13 16 23 C -0.16 -3.65 9.48 30.62 0.29 -3.36 16 24 H 0.07 0.88 8.13 -2.39 -0.02 0.87 16 25 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 27 H 0.08 2.75 5.25 -2.39 -0.01 2.74 16 28 H 0.08 2.24 6.91 -2.38 -0.02 2.23 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.41 10.48 7.33 -92.72 -0.68 9.80 16 31 H 0.08 2.24 7.56 -2.39 -0.02 2.23 16 32 H 0.04 1.70 3.28 -2.39 -0.01 1.69 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 35 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.10 2.88 5.82 -2.39 -0.01 2.87 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.10 2.26 7.44 -2.39 -0.02 2.24 16 Total: -1.00 -73.36 310.92 4.46 -68.90 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.31 Total: 26.64 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.48 Total: -7.07 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.80 Total: -84.37 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.20 Total: -48.35 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.67 Total: 44.25 kcal Total: -73.36 4.46 -68.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597267002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.188 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds