Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00416 * 2 1 4 4 O 1.20829 * 119.99248 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00555 * 180.27801 * 3 2 1 6 6 C 1.52997 * 109.47300 * 85.20030 * 5 3 2 7 7 N 1.46504 * 109.47096 * 325.20566 * 5 3 2 8 8 C 1.34775 * 120.00277 * 174.64277 * 7 5 3 9 9 O 1.21276 * 119.99652 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00021 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47232 * 299.99581 * 10 8 7 12 12 C 1.52998 * 109.47133 * 60.00189 * 10 8 7 13 13 C 1.50704 * 109.47149 * 179.97438 * 10 8 7 14 14 H 1.08001 * 120.00001 * 0.02562 * 13 10 8 15 15 C 1.37872 * 119.99972 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00000 * 180.02562 * 15 13 10 17 17 Si 1.86800 * 120.00219 * 0.02562 * 15 13 10 18 18 H 1.48492 * 109.46964 * 90.00061 * 17 15 13 19 19 H 1.48499 * 109.46933 * 210.00079 * 17 15 13 20 20 H 1.48493 * 109.46917 * 329.99877 * 17 15 13 21 21 C 1.53001 * 109.47179 * 205.20570 * 5 3 2 22 22 C 1.52993 * 117.49642 * 123.10198 * 21 5 3 23 23 C 1.52997 * 117.49774 * 54.47659 * 21 5 3 24 24 H 1.08998 * 109.46600 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46626 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.47169 * 60.00020 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00430 * 6 5 3 28 28 H 1.08999 * 109.47674 * 180.02562 * 6 5 3 29 29 H 1.08993 * 109.47670 * 300.00577 * 6 5 3 30 30 H 0.97006 * 119.99485 * 354.63639 * 7 5 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 12 10 8 32 32 H 1.09005 * 109.47264 * 299.99696 * 12 10 8 33 33 H 1.08998 * 109.47558 * 59.99592 * 12 10 8 34 34 H 0.96996 * 120.00165 * 179.97438 * 16 15 13 35 35 H 1.08996 * 115.54578 * 268.80544 * 21 5 3 36 36 H 1.08999 * 117.50577 * 359.97438 * 22 21 5 37 37 H 1.09004 * 117.49828 * 145.02494 * 22 21 5 38 38 H 1.09001 * 117.49349 * 214.97925 * 23 21 5 39 39 H 1.08998 * 117.50228 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.0758 1.1842 -1.4461 7 7 4.1168 0.1660 0.7770 8 6 5.4493 -0.0305 0.8229 9 8 6.1927 0.7104 0.2153 10 6 6.0155 -1.1708 1.6292 11 1 5.7306 -1.0532 2.6747 12 6 5.4648 -2.4950 1.0963 13 6 7.5182 -1.1698 1.5144 14 1 8.0137 -0.4182 0.9176 15 6 8.2604 -2.1282 2.1712 16 7 9.5718 -2.1270 2.0714 17 14 7.4035 -3.4285 3.2028 18 1 7.0919 -4.6070 2.3548 19 1 8.2936 -3.8420 4.3172 20 1 6.1439 -2.8701 3.7565 21 6 4.0100 2.6036 0.6090 22 6 4.9536 2.5449 1.8118 23 6 3.4894 2.9434 2.0070 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6663 2.0093 -2.0290 28 1 5.1643 1.2408 -1.4508 29 1 3.7597 0.2377 -1.8845 30 1 3.5221 -0.4268 1.2628 31 1 5.8740 -3.3198 1.6797 32 1 4.3779 -2.4961 1.1790 33 1 5.7497 -2.6126 0.0508 34 1 10.0940 -2.8010 2.5338 35 1 4.1401 3.4267 -0.0935 36 1 5.2581 1.5597 2.1651 37 1 5.7049 3.3296 1.9009 38 1 3.2774 3.9903 2.2242 39 1 2.8312 2.2203 2.4885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597267004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = -78.041994 kcal Electronic energy + Delta-G solvation = -22075.122752 eV Core-core repulsion = 18791.890344 eV Total energy + Delta-G solvation = -3283.232408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14904 -39.46944 -37.15753 -36.21736 -33.95265 -33.84662 -31.56368 -30.12984 -28.03457 -25.15412 -24.98499 -22.85577 -22.49474 -21.93717 -19.92032 -19.00813 -17.98793 -17.12193 -16.74462 -16.52998 -15.72793 -15.41460 -15.08749 -14.75792 -14.01095 -13.84843 -13.50729 -13.18914 -12.84657 -12.55586 -12.45586 -12.32851 -12.19693 -11.96744 -11.61965 -11.50585 -11.12427 -10.96363 -10.92861 -10.61363 -10.57745 -10.27408 -10.11445 -10.02618 -9.63658 -9.11335 -8.72744 -8.61900 -8.55313 -6.06031 -4.06433 1.99983 2.46536 3.22862 3.30391 3.36151 3.46923 3.56513 4.01927 4.37095 4.63542 4.70667 4.90836 4.94089 4.99513 5.22908 5.26205 5.27412 5.33324 5.47634 5.64364 5.81646 5.83681 5.90993 6.10503 6.12966 6.17874 6.28813 6.30127 6.41615 6.44163 6.49965 6.71115 6.78005 7.14308 7.52066 7.58662 8.03586 8.52727 9.02320 9.14064 9.52983 11.06721 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.006145 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.262268 B = 4555.597429 C = 5058.778283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.492 6.492 5 C 0.225 3.775 6 C -0.163 4.163 7 N -0.740 5.740 8 C 0.535 3.465 9 O -0.514 6.514 10 C -0.004 4.004 11 H 0.051 0.949 12 C -0.146 4.146 13 C -0.504 4.504 14 H 0.095 0.905 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.882 3.118 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.267 1.267 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.176 4.176 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.401 0.599 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.583 4.011 -2.360 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.377 6.377 5 C 0.137 3.863 6 C -0.221 4.221 7 N -0.398 5.398 8 C 0.324 3.676 9 O -0.387 6.387 10 C -0.026 4.026 11 H 0.069 0.931 12 C -0.203 4.203 13 C -0.542 4.542 14 H 0.113 0.887 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.713 3.287 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.167 4.167 22 C -0.183 4.183 23 C -0.213 4.213 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.236 0.764 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.082 4.766 -2.763 17.948 hybrid contribution -1.030 -1.080 0.773 1.681 sum -18.112 3.686 -1.990 18.590 Atomic orbital electron populations 1.23286 0.76405 1.03785 1.02481 1.86551 1.23354 1.33407 1.83814 1.23861 0.91555 0.81546 0.72234 1.90658 1.66370 1.36283 1.44424 1.19530 0.83496 0.88358 0.94892 1.22282 1.06305 1.02143 0.91382 1.46427 1.08707 1.31532 1.53134 1.21155 0.79792 0.85889 0.80722 1.90557 1.58174 1.46481 1.43490 1.19342 0.98717 0.89247 0.95266 0.93102 1.22125 0.97710 0.98476 1.02008 1.20917 0.86880 1.15212 1.31233 0.88679 1.24967 0.94740 0.97330 0.96021 1.69875 1.04876 1.35274 1.43269 0.86943 0.79272 0.82523 0.79974 1.20560 1.22359 1.19274 1.22308 1.06329 0.96306 0.91749 1.23119 0.91995 1.03924 0.99274 1.22918 0.98050 1.01803 0.98538 0.87979 0.91880 0.91922 0.91750 0.87065 0.91685 0.76421 0.93314 0.94696 0.92260 0.92570 0.86702 0.87650 0.88565 0.88853 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.33 9.83 -39.26 -0.39 -4.72 16 3 C 0.47 6.52 6.24 36.00 0.22 6.74 16 4 O -0.49 -7.54 15.61 -18.75 -0.29 -7.84 16 5 C 0.23 3.37 0.84 -132.97 -0.11 3.26 16 6 C -0.16 -2.40 8.25 37.16 0.31 -2.09 16 7 N -0.74 -11.82 4.33 -48.69 -0.21 -12.03 16 8 C 0.53 10.76 4.26 -10.99 -0.05 10.71 16 9 O -0.51 -11.76 11.54 5.56 0.06 -11.69 16 10 C 0.00 -0.09 2.23 -92.92 -0.21 -0.30 16 11 H 0.05 1.11 7.20 -51.93 -0.37 0.73 16 12 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 13 C -0.50 -13.98 8.95 -34.44 -0.31 -14.29 16 14 H 0.10 2.99 7.00 -52.49 -0.37 2.63 16 15 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 16 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 17 Si 0.88 20.91 24.37 -169.99 -4.14 16.77 16 18 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 19 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -5.89 6.53 56.52 0.37 -5.52 16 21 C -0.15 -2.23 4.36 -90.62 -0.40 -2.63 16 22 C -0.15 -2.36 8.42 -26.73 -0.23 -2.58 16 23 C -0.18 -2.45 9.36 -26.73 -0.25 -2.70 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.11 1.92 5.79 -51.93 -0.30 1.62 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.40 5.67 7.40 -40.82 -0.30 5.36 16 31 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 32 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.11 1.65 8.07 -51.93 -0.42 1.23 16 36 H 0.11 1.94 5.09 -51.93 -0.26 1.67 16 37 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.16 7.99 -51.93 -0.42 0.75 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -31.79 310.44 -4.81 -36.60 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.57 Total: 7.75 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 0.27 Total: -3.18 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.56 Total: -38.37 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.61 Total: -24.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.14 Total: 16.77 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.79 -4.81 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597267004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.444 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds