Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00416 * 2 1 4 4 O 1.20829 * 119.99248 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00555 * 180.27801 * 3 2 1 6 6 C 1.52997 * 109.47300 * 85.20030 * 5 3 2 7 7 N 1.46504 * 109.47096 * 325.20566 * 5 3 2 8 8 C 1.34775 * 120.00277 * 174.64277 * 7 5 3 9 9 O 1.21276 * 119.99652 * 359.97438 * 8 7 5 10 10 C 1.50695 * 120.00021 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47232 * 299.99581 * 10 8 7 12 12 C 1.52998 * 109.47133 * 60.00189 * 10 8 7 13 13 C 1.50704 * 109.47149 * 179.97438 * 10 8 7 14 14 H 1.08001 * 120.00001 * 0.02562 * 13 10 8 15 15 C 1.37872 * 119.99972 * 180.02562 * 13 10 8 16 16 N 1.31516 * 120.00000 * 180.02562 * 15 13 10 17 17 Si 1.86800 * 120.00219 * 0.02562 * 15 13 10 18 18 H 1.48492 * 109.46964 * 90.00061 * 17 15 13 19 19 H 1.48499 * 109.46933 * 210.00079 * 17 15 13 20 20 H 1.48493 * 109.46917 * 329.99877 * 17 15 13 21 21 C 1.53001 * 109.47179 * 205.20570 * 5 3 2 22 22 C 1.52993 * 117.49642 * 123.10198 * 21 5 3 23 23 C 1.52997 * 117.49774 * 54.47659 * 21 5 3 24 24 H 1.08998 * 109.46600 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46626 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.47169 * 60.00020 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00430 * 6 5 3 28 28 H 1.08999 * 109.47674 * 180.02562 * 6 5 3 29 29 H 1.08993 * 109.47670 * 300.00577 * 6 5 3 30 30 H 0.97006 * 119.99485 * 354.63639 * 7 5 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 12 10 8 32 32 H 1.09005 * 109.47264 * 299.99696 * 12 10 8 33 33 H 1.08998 * 109.47558 * 59.99592 * 12 10 8 34 34 H 0.96996 * 120.00165 * 179.97438 * 16 15 13 35 35 H 1.08996 * 115.54578 * 268.80544 * 21 5 3 36 36 H 1.08999 * 117.50577 * 359.97438 * 22 21 5 37 37 H 1.09004 * 117.49828 * 145.02494 * 22 21 5 38 38 H 1.09001 * 117.49349 * 214.97925 * 23 21 5 39 39 H 1.08998 * 117.50228 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.0758 1.1842 -1.4461 7 7 4.1168 0.1660 0.7770 8 6 5.4493 -0.0305 0.8229 9 8 6.1927 0.7104 0.2153 10 6 6.0155 -1.1708 1.6292 11 1 5.7306 -1.0532 2.6747 12 6 5.4648 -2.4950 1.0963 13 6 7.5182 -1.1698 1.5144 14 1 8.0137 -0.4182 0.9176 15 6 8.2604 -2.1282 2.1712 16 7 9.5718 -2.1270 2.0714 17 14 7.4035 -3.4285 3.2028 18 1 7.0919 -4.6070 2.3548 19 1 8.2936 -3.8420 4.3172 20 1 6.1439 -2.8701 3.7565 21 6 4.0100 2.6036 0.6090 22 6 4.9536 2.5449 1.8118 23 6 3.4894 2.9434 2.0070 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6663 2.0093 -2.0290 28 1 5.1643 1.2408 -1.4508 29 1 3.7597 0.2377 -1.8845 30 1 3.5221 -0.4268 1.2628 31 1 5.8740 -3.3198 1.6797 32 1 4.3779 -2.4961 1.1790 33 1 5.7497 -2.6126 0.0508 34 1 10.0940 -2.8010 2.5338 35 1 4.1401 3.4267 -0.0935 36 1 5.2581 1.5597 2.1651 37 1 5.7049 3.3296 1.9009 38 1 3.2774 3.9903 2.2242 39 1 2.8312 2.2203 2.4885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597267004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = -100.216777 kcal Electronic energy + Delta-G solvation = -22076.084322 eV Core-core repulsion = 18791.890344 eV Total energy + Delta-G solvation = -3284.193978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32738 -40.79254 -38.40420 -37.35391 -35.72867 -35.28067 -33.45446 -31.57741 -28.80718 -27.07350 -26.19442 -24.54394 -23.60207 -23.11007 -21.31452 -20.38652 -19.21265 -18.73049 -18.22609 -17.61076 -17.02531 -16.88991 -16.68423 -16.08416 -15.61588 -15.03256 -14.87901 -14.47304 -14.41875 -14.07978 -13.72966 -13.61463 -13.37611 -13.20824 -12.95213 -12.85270 -12.66263 -12.44822 -12.32560 -12.07748 -11.82666 -11.67561 -11.45855 -11.29748 -11.23210 -11.15968 -10.72297 -10.19220 -10.12180 -8.22409 -6.29097 0.90739 1.36164 1.42026 1.48132 1.52740 1.90150 2.18788 2.37648 2.86446 3.11676 3.46568 3.65464 3.78788 4.05325 4.08312 4.10728 4.31140 4.36069 4.39413 4.47005 4.57543 4.65949 4.68112 4.71342 4.74263 4.83887 4.95422 5.04722 5.09081 5.16178 5.18217 5.27194 5.44325 5.49076 5.57318 6.29583 6.54029 6.68207 6.88881 7.31893 7.52679 8.94790 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.006145 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.262268 B = 4555.597429 C = 5058.778283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.477 3.523 4 O -0.505 6.505 5 C 0.221 3.779 6 C -0.161 4.161 7 N -0.720 5.720 8 C 0.542 3.458 9 O -0.550 6.550 10 C -0.009 4.009 11 H 0.065 0.935 12 C -0.141 4.141 13 C -0.512 4.512 14 H 0.037 0.963 15 C 0.008 3.992 16 N -0.952 5.952 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.303 1.303 20 H -0.232 1.232 21 C -0.155 4.155 22 C -0.166 4.166 23 C -0.152 4.152 24 H 0.133 0.867 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.414 0.586 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.508 2.938 -1.642 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.319 3.681 4 O -0.392 6.392 5 C 0.133 3.867 6 C -0.218 4.218 7 N -0.377 5.377 8 C 0.331 3.669 9 O -0.426 6.426 10 C -0.031 4.031 11 H 0.083 0.917 12 C -0.199 4.199 13 C -0.550 4.550 14 H 0.055 0.945 15 C -0.189 4.189 16 N -0.593 5.593 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.231 1.231 20 H -0.155 1.155 21 C -0.174 4.174 22 C -0.204 4.204 23 C -0.189 4.189 24 H 0.151 0.849 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.251 0.749 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.082 3.689 -2.051 21.500 hybrid contribution 0.189 -0.658 0.476 0.834 sum -20.893 3.031 -1.574 21.170 Atomic orbital electron populations 1.23646 0.74096 1.06016 1.02884 1.86523 1.25493 1.32043 1.83228 1.23359 0.90686 0.81979 0.72064 1.90661 1.66399 1.36879 1.45242 1.19586 0.84795 0.87629 0.94644 1.22211 1.04397 1.03447 0.91781 1.46050 1.07265 1.31796 1.52637 1.20713 0.80963 0.85075 0.80181 1.90566 1.59505 1.47551 1.45003 1.19282 0.95271 0.91852 0.96651 0.91692 1.22034 1.00678 0.96097 1.01065 1.21066 0.90275 1.13643 1.30022 0.94480 1.25949 0.95261 1.00113 0.97557 1.70069 1.07173 1.36816 1.45198 0.85798 0.79119 0.79392 0.77803 1.18874 1.23108 1.15510 1.22413 1.06021 0.96719 0.92287 1.22985 0.93490 1.02715 1.01168 1.22978 0.95860 1.02980 0.97069 0.84901 0.91455 0.91622 0.89860 0.90025 0.90849 0.74920 0.93836 0.89834 0.93209 0.92577 0.86196 0.90008 0.89042 0.87074 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.35 9.83 -51.43 -0.51 -7.85 16 3 C 0.48 11.91 6.24 71.23 0.44 12.35 16 4 O -0.51 -13.99 15.61 21.95 0.34 -13.64 16 5 C 0.22 6.23 0.84 2.85 0.00 6.24 16 6 C -0.16 -4.55 8.25 71.98 0.59 -3.96 16 7 N -0.72 -21.63 4.33 -426.34 -1.85 -23.47 16 8 C 0.54 21.70 4.26 87.66 0.37 22.07 16 9 O -0.55 -26.22 11.54 -3.02 -0.03 -26.26 16 10 C -0.01 -0.39 2.23 -12.29 -0.03 -0.42 16 11 H 0.07 2.67 7.20 -2.39 -0.02 2.65 16 12 C -0.14 -5.19 8.57 71.98 0.62 -4.58 16 13 C -0.51 -29.38 8.95 25.60 0.23 -29.15 16 14 H 0.04 2.50 7.00 -2.91 -0.02 2.48 16 15 C 0.01 0.43 5.45 84.65 0.46 0.90 16 16 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 17 Si 0.95 42.42 24.37 68.60 1.67 44.09 16 18 H -0.26 -10.99 6.87 99.48 0.68 -10.31 16 19 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.23 -8.92 6.53 99.48 0.65 -8.27 16 21 C -0.16 -4.52 4.36 -10.80 -0.05 -4.57 16 22 C -0.17 -5.36 8.42 30.59 0.26 -5.10 16 23 C -0.15 -3.92 9.36 30.59 0.29 -3.64 16 24 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.08 2.87 5.79 -2.39 -0.01 2.86 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.41 10.24 7.40 -92.70 -0.69 9.55 16 31 H 0.04 1.65 3.27 -2.39 -0.01 1.64 16 32 H 0.08 2.25 7.56 -2.38 -0.02 2.23 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.12 3.34 8.07 -2.39 -0.02 3.32 16 36 H 0.08 3.04 5.09 -2.39 -0.01 3.02 16 37 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 38 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.09 2.24 7.99 -2.39 -0.02 2.22 16 Total: -1.00 -72.92 310.44 4.61 -68.31 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.30 Total: 27.01 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.39 Total: -8.30 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.55 Total: -83.36 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.20 Total: -47.75 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.67 Total: 44.09 kcal Total: -72.92 4.61 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597267004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.910 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds