Wall clock time and date at job start Mon Mar 30 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 120.00035 * 2 1 4 4 O 1.21586 * 119.99809 * 355.01346 * 3 2 1 5 5 N 1.34775 * 120.00010 * 175.28913 * 3 2 1 6 6 C 1.46964 * 120.59312 * 4.61346 * 5 3 2 7 7 C 1.53808 * 108.39969 * 124.75647 * 6 5 3 8 8 N 1.46968 * 108.57979 * 49.63496 * 7 6 5 9 9 C 1.34775 * 120.59389 * 124.66865 * 8 7 6 10 10 O 1.21280 * 119.99871 * 183.34488 * 9 8 7 11 11 C 1.50702 * 120.00058 * 3.34948 * 9 8 7 12 12 H 1.08999 * 109.47085 * 306.66500 * 11 9 8 13 13 C 1.53003 * 109.47092 * 66.66570 * 11 9 8 14 14 C 1.50700 * 109.47184 * 186.66627 * 11 9 8 15 15 H 1.07997 * 119.99921 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00090 * 180.02562 * 14 11 9 17 17 N 1.31514 * 119.99981 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47360 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46999 * 120.00102 * 18 16 14 21 21 H 1.48496 * 109.47152 * 239.99576 * 18 16 14 22 22 C 1.46965 * 118.81216 * 304.64648 * 8 7 6 23 23 C 1.46959 * 120.59185 * 184.88811 * 5 3 2 24 24 H 1.08994 * 109.47100 * 60.00567 * 1 2 3 25 25 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 300.00356 * 1 2 3 27 27 H 0.97005 * 119.99972 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.61138 * 244.54028 * 6 5 3 29 29 H 1.09001 * 109.61456 * 5.04675 * 6 5 3 30 30 H 1.09005 * 109.74302 * 289.84481 * 7 6 5 31 31 H 1.09001 * 109.53603 * 169.30183 * 7 6 5 32 32 H 1.08998 * 109.47345 * 65.79022 * 13 11 9 33 33 H 1.08999 * 109.47159 * 185.78811 * 13 11 9 34 34 H 1.08997 * 109.47095 * 305.78839 * 13 11 9 35 35 H 0.97003 * 119.99794 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.60773 * 295.48512 * 22 8 7 37 37 H 1.09001 * 109.60834 * 174.97048 * 22 8 7 38 38 H 1.09001 * 109.61126 * 354.95299 * 23 5 3 39 39 H 1.09000 * 109.60697 * 115.46631 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5344 2.2182 -0.0915 5 7 3.4832 1.1692 0.0959 6 6 4.2347 -0.0938 0.0994 7 6 5.2806 -0.0396 -1.0269 8 7 6.0209 1.2254 -0.9180 9 6 7.3652 1.2273 -0.8222 10 8 7.9609 2.2730 -0.6718 11 6 8.1283 -0.0698 -0.9019 12 1 7.7266 -0.7730 -0.1724 13 6 7.9889 -0.6579 -2.3075 14 6 9.5838 0.1846 -0.6058 15 1 9.9226 1.1855 -0.3827 16 6 10.4833 -0.8603 -0.6209 17 7 10.0708 -2.0791 -0.8931 18 14 12.2876 -0.5448 -0.2546 19 1 12.4918 0.9003 0.0192 20 1 12.6972 -1.3359 0.9336 21 1 13.1082 -0.9483 -1.4246 22 6 5.2690 2.4881 -0.9161 23 6 4.2234 2.4341 0.2047 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.7339 -0.2197 1.0602 29 1 3.5522 -0.9261 -0.0727 30 1 4.7822 -0.0896 -1.9951 31 1 5.9705 -0.8772 -0.9243 32 1 8.4818 -0.0029 -3.0260 33 1 8.4531 -1.6436 -2.3366 34 1 6.9326 -0.7461 -2.5614 35 1 10.7036 -2.8142 -0.9033 36 1 4.7697 2.6181 -1.8762 37 1 5.9513 3.3198 -0.7401 38 1 3.5335 3.2717 0.1021 39 1 4.7219 2.4840 1.1727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597331112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:15 Heat of formation + Delta-G solvation = -46.214439 kcal Electronic energy + Delta-G solvation = -21441.949817 eV Core-core repulsion = 18192.390307 eV Total energy + Delta-G solvation = -3249.559510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52590 -39.11588 -36.70368 -34.83072 -33.98279 -33.52922 -31.53444 -30.16772 -28.02311 -26.19741 -25.23460 -23.71451 -23.21249 -21.50826 -20.03639 -19.24134 -17.65034 -16.56195 -16.36806 -15.82964 -15.69957 -15.28531 -14.83588 -14.47244 -14.45883 -14.27049 -14.03814 -13.18511 -13.16500 -12.86990 -12.50179 -12.35875 -12.21192 -11.57031 -11.52559 -11.28040 -11.21107 -11.01946 -10.74413 -10.63157 -10.31221 -10.19278 -9.99164 -9.37708 -8.99953 -8.94524 -8.64509 -8.37134 -7.99048 -6.07983 -4.10062 2.51486 3.09344 3.29875 3.37759 3.45089 3.56840 3.62217 3.75291 4.43656 4.82198 4.88185 4.93920 5.12065 5.23685 5.26305 5.32415 5.43787 5.47363 5.59009 5.68062 5.76802 5.89417 6.05427 6.10922 6.27885 6.38431 6.57210 6.75138 6.77667 6.85959 7.00962 7.39663 7.68541 7.78266 7.92574 8.02654 8.32392 8.47288 8.98790 9.13872 9.55662 11.00178 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.004376 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.511617 B = 6396.763869 C = 6824.804778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.707 3.293 4 O -0.594 6.594 5 N -0.626 5.626 6 C 0.095 3.905 7 C 0.097 3.903 8 N -0.627 5.627 9 C 0.523 3.477 10 O -0.541 6.541 11 C 0.031 3.969 12 H 0.051 0.949 13 C -0.134 4.134 14 C -0.501 4.501 15 H 0.074 0.926 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.097 3.903 23 C 0.117 3.883 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.397 0.603 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -1.183 0.977 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.412 5.412 3 C 0.408 3.592 4 O -0.472 6.472 5 N -0.364 5.364 6 C -0.029 4.029 7 C -0.027 4.027 8 N -0.364 5.364 9 C 0.314 3.686 10 O -0.417 6.417 11 C 0.010 3.990 12 H 0.068 0.932 13 C -0.192 4.192 14 C -0.539 4.539 15 H 0.092 0.908 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.027 4.027 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.354 -0.004 0.993 16.384 hybrid contribution 1.081 -0.524 0.138 1.209 sum -15.273 -0.528 1.131 15.324 Atomic orbital electron populations 1.21372 0.78359 1.01840 1.02156 1.45112 1.07688 1.07388 1.80979 1.15848 0.81464 0.84186 0.77669 1.90898 1.67563 1.30633 1.58112 1.47253 1.03976 1.07926 1.77225 1.22237 0.94528 0.85431 1.00702 1.22213 0.94620 0.88612 0.97304 1.48281 1.06601 1.05600 1.75874 1.22090 0.80014 0.93671 0.72786 1.90529 1.67740 1.34864 1.48533 1.18866 0.95694 0.88450 0.95979 0.93181 1.21833 0.97020 1.03934 0.96395 1.21183 0.90770 0.95395 1.46600 0.90784 1.24931 0.99141 0.94961 0.95088 1.69880 1.34647 0.99343 1.49762 0.86411 0.84578 0.78579 0.77785 1.19556 1.21049 1.21035 1.21845 0.93913 0.89102 0.97887 1.21918 0.93859 0.85813 0.99087 0.92401 0.90748 0.92574 0.76645 0.90321 0.89848 0.91657 0.86961 0.94731 0.89107 0.96515 0.93020 0.91960 0.88071 0.88161 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.85 10.71 59.85 0.64 1.49 16 2 N -0.75 -7.34 5.62 -72.07 -0.41 -7.75 16 3 C 0.71 9.62 8.29 -86.92 -0.72 8.89 16 4 O -0.59 -10.22 15.76 5.29 0.08 -10.13 16 5 N -0.63 -8.05 2.94 -177.94 -0.52 -8.57 16 6 C 0.10 1.05 6.59 -3.37 -0.02 1.02 16 7 C 0.10 1.32 5.12 -3.37 -0.02 1.30 16 8 N -0.63 -10.80 2.95 -172.21 -0.51 -11.30 16 9 C 0.52 11.62 6.99 -10.99 -0.08 11.54 16 10 O -0.54 -13.87 14.89 5.56 0.08 -13.79 16 11 C 0.03 0.74 1.79 -92.92 -0.17 0.57 16 12 H 0.05 1.20 7.21 -51.93 -0.37 0.82 16 13 C -0.13 -2.95 8.46 37.16 0.31 -2.64 16 14 C -0.50 -13.87 8.37 -34.44 -0.29 -14.16 16 15 H 0.07 2.19 6.77 -52.49 -0.36 1.83 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -24.32 11.38 55.43 0.63 -23.69 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.10 1.47 6.60 -3.59 -0.02 1.45 16 23 C 0.12 1.60 6.60 -3.60 -0.02 1.58 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 2.85 6.30 -40.82 -0.26 2.59 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.63 5.61 -51.93 -0.29 0.34 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.11 1.62 4.92 -51.93 -0.26 1.36 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 2.18 6.25 -51.93 -0.32 1.85 16 34 H 0.02 0.30 5.87 -51.93 -0.30 -0.01 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.67 6.99 -51.93 -0.36 1.31 16 38 H 0.10 1.38 6.99 -51.93 -0.36 1.02 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 309.58 15.07 4.67 4.67 Total: -1.00 -33.60 309.58 -6.88 -40.48 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.41 Total: 1.13 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -0.48 Total: 12.56 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.81 Total: -51.31 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.60 -6.88 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597331112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.734 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds