Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 120.00035 * 2 1 4 4 O 1.21586 * 119.99809 * 355.01346 * 3 2 1 5 5 N 1.34775 * 120.00010 * 175.28913 * 3 2 1 6 6 C 1.46964 * 120.59312 * 4.61346 * 5 3 2 7 7 C 1.53808 * 108.39969 * 124.75647 * 6 5 3 8 8 N 1.46968 * 108.57979 * 49.63496 * 7 6 5 9 9 C 1.34775 * 120.59389 * 124.66865 * 8 7 6 10 10 O 1.21280 * 119.99871 * 183.34488 * 9 8 7 11 11 C 1.50702 * 120.00058 * 3.34948 * 9 8 7 12 12 H 1.08999 * 109.47085 * 306.66500 * 11 9 8 13 13 C 1.53003 * 109.47092 * 66.66570 * 11 9 8 14 14 C 1.50700 * 109.47184 * 186.66627 * 11 9 8 15 15 H 1.07997 * 119.99921 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00090 * 180.02562 * 14 11 9 17 17 N 1.31514 * 119.99981 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47360 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46999 * 120.00102 * 18 16 14 21 21 H 1.48496 * 109.47152 * 239.99576 * 18 16 14 22 22 C 1.46965 * 118.81216 * 304.64648 * 8 7 6 23 23 C 1.46959 * 120.59185 * 184.88811 * 5 3 2 24 24 H 1.08994 * 109.47100 * 60.00567 * 1 2 3 25 25 H 1.09004 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 300.00356 * 1 2 3 27 27 H 0.97005 * 119.99972 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.61138 * 244.54028 * 6 5 3 29 29 H 1.09001 * 109.61456 * 5.04675 * 6 5 3 30 30 H 1.09005 * 109.74302 * 289.84481 * 7 6 5 31 31 H 1.09001 * 109.53603 * 169.30183 * 7 6 5 32 32 H 1.08998 * 109.47345 * 65.79022 * 13 11 9 33 33 H 1.08999 * 109.47159 * 185.78811 * 13 11 9 34 34 H 1.08997 * 109.47095 * 305.78839 * 13 11 9 35 35 H 0.97003 * 119.99794 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.60773 * 295.48512 * 22 8 7 37 37 H 1.09001 * 109.60834 * 174.97048 * 22 8 7 38 38 H 1.09001 * 109.61126 * 354.95299 * 23 5 3 39 39 H 1.09000 * 109.60697 * 115.46631 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5344 2.2182 -0.0915 5 7 3.4832 1.1692 0.0959 6 6 4.2347 -0.0938 0.0994 7 6 5.2806 -0.0396 -1.0269 8 7 6.0209 1.2254 -0.9180 9 6 7.3652 1.2273 -0.8222 10 8 7.9609 2.2730 -0.6718 11 6 8.1283 -0.0698 -0.9019 12 1 7.7266 -0.7730 -0.1724 13 6 7.9889 -0.6579 -2.3075 14 6 9.5838 0.1846 -0.6058 15 1 9.9226 1.1855 -0.3827 16 6 10.4833 -0.8603 -0.6209 17 7 10.0708 -2.0791 -0.8931 18 14 12.2876 -0.5448 -0.2546 19 1 12.4918 0.9003 0.0192 20 1 12.6972 -1.3359 0.9336 21 1 13.1082 -0.9483 -1.4246 22 6 5.2690 2.4881 -0.9161 23 6 4.2234 2.4341 0.2047 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.7339 -0.2197 1.0602 29 1 3.5522 -0.9261 -0.0727 30 1 4.7822 -0.0896 -1.9951 31 1 5.9705 -0.8772 -0.9243 32 1 8.4818 -0.0029 -3.0260 33 1 8.4531 -1.6436 -2.3366 34 1 6.9326 -0.7461 -2.5614 35 1 10.7036 -2.8142 -0.9033 36 1 4.7697 2.6181 -1.8762 37 1 5.9513 3.3198 -0.7401 38 1 3.5335 3.2717 0.1021 39 1 4.7219 2.4840 1.1727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597331112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -70.463055 kcal Electronic energy + Delta-G solvation = -21443.001316 eV Core-core repulsion = 18192.390307 eV Total energy + Delta-G solvation = -3250.611009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66917 -40.58091 -38.04181 -35.91387 -35.73482 -34.90932 -32.97448 -31.78102 -29.13551 -27.24544 -27.12372 -24.91960 -24.64942 -22.90552 -21.23159 -20.39728 -18.95375 -18.39318 -17.51392 -17.37007 -16.93724 -16.73332 -16.35226 -16.08819 -15.45753 -15.32314 -15.05096 -14.78337 -14.68419 -14.25631 -13.78510 -13.54950 -13.18259 -13.06063 -12.95633 -12.73308 -12.68717 -12.48813 -12.43601 -12.29383 -12.19231 -12.00270 -11.31558 -11.00775 -10.58898 -10.42144 -10.25732 -10.01156 -9.25494 -8.14667 -6.23030 1.39745 1.42797 1.52308 1.56206 1.86948 2.08583 2.19218 2.47377 2.90707 3.15859 3.75149 3.80699 4.00256 4.13283 4.27684 4.31957 4.48608 4.51809 4.64152 4.70327 4.70599 4.76022 4.79194 4.93647 4.96109 4.99935 5.04419 5.33887 5.49242 5.49781 5.59482 5.76491 5.87481 5.96215 6.20512 6.56079 6.84365 6.90557 7.40185 7.48778 7.49925 8.91588 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.004376 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.511617 B = 6396.763869 C = 6824.804778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.739 5.739 3 C 0.702 3.298 4 O -0.634 6.634 5 N -0.627 5.627 6 C 0.101 3.899 7 C 0.089 3.911 8 N -0.618 5.618 9 C 0.521 3.479 10 O -0.587 6.587 11 C 0.030 3.970 12 H 0.050 0.950 13 C -0.119 4.119 14 C -0.531 4.531 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.950 3.050 19 H -0.283 1.283 20 H -0.273 1.273 21 H -0.275 1.275 22 C 0.100 3.900 23 C 0.126 3.874 24 H 0.047 0.953 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.412 0.588 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -2.960 0.912 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.397 5.397 3 C 0.403 3.597 4 O -0.516 6.516 5 N -0.364 5.364 6 C -0.022 4.022 7 C -0.034 4.034 8 N -0.352 5.352 9 C 0.313 3.687 10 O -0.467 6.467 11 C 0.009 3.991 12 H 0.068 0.932 13 C -0.177 4.177 14 C -0.569 4.569 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.546 5.546 18 Si 0.776 3.224 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.024 4.024 23 C 0.001 3.999 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.066 0.934 27 H 0.251 0.749 28 H 0.096 0.904 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.945 -1.862 0.924 18.065 hybrid contribution 1.476 -0.002 0.152 1.484 sum -16.470 -1.864 1.077 16.610 Atomic orbital electron populations 1.21556 0.77086 1.04174 1.01243 1.45061 1.08456 1.06750 1.79468 1.16057 0.81452 0.84671 0.77496 1.90874 1.68337 1.32430 1.59939 1.47245 1.04019 1.08058 1.77035 1.22314 0.94479 0.85875 0.99560 1.22491 0.94877 0.86435 0.99583 1.48191 1.05292 1.07848 1.73885 1.21763 0.81662 0.92378 0.72929 1.90504 1.69276 1.35888 1.51007 1.18772 0.94100 0.89424 0.96790 0.93207 1.21641 0.99215 1.02001 0.94819 1.21308 0.93385 0.94307 1.47903 0.93781 1.25490 1.02253 0.94869 0.94831 1.69930 1.35677 0.99555 1.49426 0.85629 0.80807 0.77757 0.78196 1.20794 1.19833 1.20099 1.21904 0.93663 0.87614 0.99201 1.21722 0.93287 0.86708 0.98146 0.93450 0.86786 0.93419 0.74904 0.90370 0.85640 0.89602 0.87495 0.96626 0.90881 0.92504 0.92573 0.90755 0.89760 0.88204 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.32 10.71 127.77 1.37 2.69 16 2 N -0.74 -11.87 5.62 -500.20 -2.81 -14.68 16 3 C 0.70 17.46 8.29 179.05 1.49 18.94 16 4 O -0.63 -21.08 15.76 -3.99 -0.06 -21.14 16 5 N -0.63 -14.63 2.94 -835.15 -2.46 -17.08 16 6 C 0.10 1.89 6.59 86.56 0.57 2.46 16 7 C 0.09 2.17 5.12 86.56 0.44 2.62 16 8 N -0.62 -20.66 2.95 -817.14 -2.41 -23.07 16 9 C 0.52 23.41 6.99 87.66 0.61 24.02 16 10 O -0.59 -31.16 14.89 -3.03 -0.05 -31.20 16 11 C 0.03 1.44 1.79 -12.28 -0.02 1.42 16 12 H 0.05 2.37 7.21 -2.39 -0.02 2.36 16 13 C -0.12 -5.17 8.46 71.98 0.61 -4.56 16 14 C -0.53 -30.06 8.37 25.60 0.21 -29.85 16 15 H 0.04 2.72 6.77 -2.91 -0.02 2.70 16 16 C 0.03 1.37 5.30 84.65 0.45 1.82 16 17 N -0.91 -48.72 11.38 21.45 0.24 -48.48 16 18 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.10 2.98 6.60 86.42 0.57 3.55 16 23 C 0.13 3.31 6.60 86.42 0.57 3.89 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.41 4.01 6.30 -92.70 -0.58 3.42 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.13 1.29 5.61 -2.39 -0.01 1.27 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.11 2.80 4.92 -2.39 -0.01 2.78 16 32 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 3.45 6.25 -2.39 -0.01 3.44 16 34 H 0.06 1.95 5.87 -2.39 -0.01 1.94 16 35 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.84 6.99 -2.39 -0.02 2.82 16 38 H 0.10 2.69 6.99 -2.39 -0.02 2.67 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.37 309.58 1.84 -72.53 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.49 Total: 10.02 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 6.87 Total: 27.00 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -7.43 Total: -103.31 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.11 Total: -52.34 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.37 1.84 -72.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597331112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.062 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds