Wall clock time and date at job start Mon Mar 30 2020 04:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 117.00205 * 2 1 4 4 O 1.20823 * 119.99433 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00056 * 179.72385 * 3 2 1 6 6 C 1.52994 * 109.47073 * 179.97438 * 5 3 2 7 7 N 1.46497 * 112.85163 * 294.14173 * 6 5 3 8 8 C 1.34776 * 120.00495 * 295.37997 * 7 6 5 9 9 O 1.21290 * 119.99587 * 354.74411 * 8 7 6 10 10 C 1.50694 * 120.00778 * 174.74565 * 8 7 6 11 11 H 1.08995 * 109.46982 * 59.99657 * 10 8 7 12 12 C 1.53002 * 109.46781 * 300.00331 * 10 8 7 13 13 C 1.50696 * 109.47450 * 180.02562 * 10 8 7 14 14 H 1.07996 * 119.99957 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99776 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00396 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99813 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47098 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47312 * 120.00037 * 17 15 13 20 20 H 1.48503 * 109.47500 * 240.00169 * 17 15 13 21 21 C 1.53780 * 113.61587 * 162.83668 * 6 5 3 22 22 C 1.53781 * 87.08211 * 220.02135 * 21 6 5 23 23 C 1.53781 * 87.08354 * 25.42988 * 22 21 6 24 24 H 1.08998 * 109.47149 * 59.99957 * 1 2 3 25 25 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47039 * 299.99804 * 1 2 3 27 27 H 1.08997 * 109.47556 * 299.97227 * 5 3 2 28 28 H 1.09008 * 109.46894 * 59.97143 * 5 3 2 29 29 H 0.97004 * 119.99938 * 115.37830 * 7 6 5 30 30 H 1.09001 * 109.47361 * 180.02562 * 12 10 8 31 31 H 1.09008 * 109.46908 * 299.99716 * 12 10 8 32 32 H 1.08991 * 109.47487 * 59.99519 * 12 10 8 33 33 H 0.97002 * 119.99976 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.61126 * 334.56509 * 21 6 5 35 35 H 1.09000 * 113.61688 * 105.47417 * 21 6 5 36 36 H 1.09003 * 113.61391 * 270.88001 * 22 21 6 37 37 H 1.09007 * 113.61628 * 139.98013 * 22 21 6 38 38 H 1.08998 * 113.61842 * 220.02013 * 23 22 21 39 39 H 1.08995 * 113.61373 * 89.11555 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0063 6 6 4.0001 2.7420 0.0043 7 7 3.6373 3.4409 -1.2310 8 6 4.1888 3.0684 -2.4030 9 8 5.0553 2.2200 -2.4229 10 6 3.7291 3.7060 -3.6887 11 1 3.9053 4.7808 -3.6445 12 6 2.2346 3.4419 -3.8830 13 6 4.4971 3.1176 -4.8440 14 1 5.2438 2.3581 -4.6651 15 6 4.2465 3.5488 -6.1294 16 7 3.3369 4.4733 -6.3473 17 14 5.1990 2.8199 -7.5615 18 1 6.1579 1.8061 -7.0534 19 1 4.2535 2.1766 -8.5087 20 1 5.9435 3.8978 -8.2608 21 6 5.4640 2.9521 0.4259 22 6 4.9804 4.1873 1.2040 23 6 3.6054 3.5029 1.2812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9522 0.7832 0.8992 28 1 3.9598 0.7783 -0.8808 29 1 3.0000 4.1718 -1.2055 30 1 1.9021 3.9027 -4.8132 31 1 2.0584 2.3671 -3.9271 32 1 1.6788 3.8672 -3.0474 33 1 3.1608 4.7769 -7.2516 34 1 5.8527 2.1587 1.0642 35 1 6.1276 3.1918 -0.4050 36 1 4.9797 5.1031 0.6128 37 1 5.4627 4.3088 2.1740 38 1 2.7686 4.1870 1.1407 39 1 3.4861 2.8599 2.1532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597356306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:17 Heat of formation + Delta-G solvation = -108.813168 kcal Electronic energy + Delta-G solvation = -21789.970470 eV Core-core repulsion = 18505.403725 eV Total energy + Delta-G solvation = -3284.566746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75283 -39.48972 -37.50624 -36.20798 -33.67845 -32.48214 -30.86006 -29.96230 -27.44376 -25.62514 -25.08978 -23.87986 -22.40592 -20.78420 -19.64363 -18.61171 -17.43150 -16.54596 -16.39176 -16.15836 -15.95372 -15.22369 -14.93943 -14.45312 -13.87727 -13.78208 -13.45365 -13.32522 -12.78770 -12.50257 -12.24304 -12.08242 -11.94744 -11.54985 -11.40777 -10.99255 -10.87261 -10.76324 -10.68106 -10.63409 -10.60478 -10.29939 -10.20465 -10.03915 -9.92814 -8.91771 -8.53418 -8.38484 -8.25553 -5.99689 -4.02722 2.39923 2.82251 3.33893 3.41330 3.49280 3.72589 3.87945 4.49831 4.56922 4.70223 4.81755 4.94345 5.09673 5.15689 5.19719 5.33536 5.36695 5.47491 5.55170 5.72801 5.76675 5.90219 6.01863 6.20822 6.29331 6.32328 6.43145 6.52502 6.70563 6.91025 6.99261 7.24000 7.52998 7.80228 7.90815 8.03871 8.21481 8.51833 9.06640 9.29481 9.62777 11.07962 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.006006 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.893323 B = 4661.034701 C = 5395.907764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.498 6.498 5 C -0.117 4.117 6 C 0.170 3.830 7 N -0.719 5.719 8 C 0.522 3.478 9 O -0.544 6.544 10 C 0.029 3.971 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.498 4.498 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.401 0.599 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -4.074 15.992 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.384 6.384 5 C -0.156 4.156 6 C 0.081 3.919 7 N -0.372 5.372 8 C 0.312 3.688 9 O -0.420 6.420 10 C 0.008 3.992 11 H 0.068 0.932 12 C -0.188 4.188 13 C -0.536 4.536 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.175 4.175 22 C -0.177 4.177 23 C -0.169 4.169 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.963 -4.305 15.800 16.642 hybrid contribution -0.210 -0.009 -0.846 0.872 sum -3.173 -4.315 14.954 15.885 Atomic orbital electron populations 1.23201 0.76771 1.03308 1.02462 1.86513 1.23179 1.34047 1.84474 1.23789 0.92096 0.81214 0.72159 1.90626 1.67057 1.36094 1.44666 1.21802 0.87468 0.99827 1.06497 1.20833 0.95737 0.89066 0.86225 1.45985 1.47781 1.37979 1.05504 1.21964 0.79939 0.81801 0.85113 1.90506 1.31036 1.33283 1.87201 1.18868 0.94643 0.97192 0.88534 0.93174 1.21707 0.95868 0.99386 1.01801 1.21185 1.20350 1.22227 0.89863 0.90707 1.24959 0.95391 0.95092 0.98905 1.69890 1.32858 1.29922 1.20975 0.86420 0.79889 0.79078 0.81991 1.19568 1.21118 1.21085 1.23225 0.96059 0.97857 1.00320 1.22834 0.96510 0.98070 1.00307 1.23164 0.98023 0.99483 0.96279 0.91802 0.88470 0.92196 0.87465 0.86274 0.76433 0.88971 0.95421 0.96736 0.93080 0.89708 0.89895 0.89974 0.91482 0.90430 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.15 10.57 -39.28 -0.41 -5.56 16 3 C 0.46 7.13 7.72 36.00 0.28 7.41 16 4 O -0.50 -8.39 14.54 -18.75 -0.27 -8.66 16 5 C -0.12 -1.69 5.20 -27.89 -0.15 -1.84 16 6 C 0.17 2.52 0.23 -131.01 -0.03 2.49 16 7 N -0.72 -12.90 4.39 -46.86 -0.21 -13.11 16 8 C 0.52 11.77 6.67 -10.99 -0.07 11.69 16 9 O -0.54 -13.49 13.32 5.55 0.07 -13.42 16 10 C 0.03 0.73 2.64 -92.93 -0.25 0.48 16 11 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 12 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 13 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 14 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.14 -1.87 6.97 -25.92 -0.18 -2.05 16 22 C -0.14 -1.63 7.99 -25.92 -0.21 -1.84 16 23 C -0.13 -1.59 6.24 -25.92 -0.16 -1.75 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.11 1.17 8.06 -51.93 -0.42 0.76 16 28 H 0.12 2.03 6.88 -51.92 -0.36 1.67 16 29 H 0.40 6.83 8.24 -40.82 -0.34 6.49 16 30 H 0.09 2.42 6.07 -51.93 -0.31 2.11 16 31 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.01 0.29 7.69 -51.93 -0.40 -0.10 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 35 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 39 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -31.89 322.23 -6.02 -37.91 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.91 Total: 5.67 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.25 Total: 0.28 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.42 Total: -38.06 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.61 Total: -27.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.89 -6.02 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.900 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds