Wall clock time and date at job start Mon Mar 30 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 117.00205 * 2 1 4 4 O 1.20823 * 119.99433 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00056 * 179.72385 * 3 2 1 6 6 C 1.52994 * 109.47073 * 179.97438 * 5 3 2 7 7 N 1.46497 * 112.85163 * 294.14173 * 6 5 3 8 8 C 1.34776 * 120.00495 * 295.37997 * 7 6 5 9 9 O 1.21290 * 119.99587 * 354.74411 * 8 7 6 10 10 C 1.50694 * 120.00778 * 174.74565 * 8 7 6 11 11 H 1.08995 * 109.46982 * 59.99657 * 10 8 7 12 12 C 1.53002 * 109.46781 * 300.00331 * 10 8 7 13 13 C 1.50696 * 109.47450 * 180.02562 * 10 8 7 14 14 H 1.07996 * 119.99957 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99776 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00396 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99813 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47098 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47312 * 120.00037 * 17 15 13 20 20 H 1.48503 * 109.47500 * 240.00169 * 17 15 13 21 21 C 1.53780 * 113.61587 * 162.83668 * 6 5 3 22 22 C 1.53781 * 87.08211 * 220.02135 * 21 6 5 23 23 C 1.53781 * 87.08354 * 25.42988 * 22 21 6 24 24 H 1.08998 * 109.47149 * 59.99957 * 1 2 3 25 25 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47039 * 299.99804 * 1 2 3 27 27 H 1.08997 * 109.47556 * 299.97227 * 5 3 2 28 28 H 1.09008 * 109.46894 * 59.97143 * 5 3 2 29 29 H 0.97004 * 119.99938 * 115.37830 * 7 6 5 30 30 H 1.09001 * 109.47361 * 180.02562 * 12 10 8 31 31 H 1.09008 * 109.46908 * 299.99716 * 12 10 8 32 32 H 1.08991 * 109.47487 * 59.99519 * 12 10 8 33 33 H 0.97002 * 119.99976 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.61126 * 334.56509 * 21 6 5 35 35 H 1.09000 * 113.61688 * 105.47417 * 21 6 5 36 36 H 1.09003 * 113.61391 * 270.88001 * 22 21 6 37 37 H 1.09007 * 113.61628 * 139.98013 * 22 21 6 38 38 H 1.08998 * 113.61842 * 220.02013 * 23 22 21 39 39 H 1.08995 * 113.61373 * 89.11555 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0063 6 6 4.0001 2.7420 0.0043 7 7 3.6373 3.4409 -1.2310 8 6 4.1888 3.0684 -2.4030 9 8 5.0553 2.2200 -2.4229 10 6 3.7291 3.7060 -3.6887 11 1 3.9053 4.7808 -3.6445 12 6 2.2346 3.4419 -3.8830 13 6 4.4971 3.1176 -4.8440 14 1 5.2438 2.3581 -4.6651 15 6 4.2465 3.5488 -6.1294 16 7 3.3369 4.4733 -6.3473 17 14 5.1990 2.8199 -7.5615 18 1 6.1579 1.8061 -7.0534 19 1 4.2535 2.1766 -8.5087 20 1 5.9435 3.8978 -8.2608 21 6 5.4640 2.9521 0.4259 22 6 4.9804 4.1873 1.2040 23 6 3.6054 3.5029 1.2812 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9522 0.7832 0.8992 28 1 3.9598 0.7783 -0.8808 29 1 3.0000 4.1718 -1.2055 30 1 1.9021 3.9027 -4.8132 31 1 2.0584 2.3671 -3.9271 32 1 1.6788 3.8672 -3.0474 33 1 3.1608 4.7769 -7.2516 34 1 5.8527 2.1587 1.0642 35 1 6.1276 3.1918 -0.4050 36 1 4.9797 5.1031 0.6128 37 1 5.4627 4.3088 2.1740 38 1 2.7686 4.1870 1.1407 39 1 3.4861 2.8599 2.1532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597356306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:16 Heat of formation + Delta-G solvation = -129.164132 kcal Electronic energy + Delta-G solvation = -21790.852954 eV Core-core repulsion = 18505.403725 eV Total energy + Delta-G solvation = -3285.449230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97541 -40.78576 -39.03966 -37.34653 -35.75069 -34.07809 -32.38688 -31.58807 -28.38546 -27.23128 -26.65542 -25.28015 -23.98641 -21.91552 -21.22760 -20.00150 -18.58487 -18.28357 -17.77073 -17.62312 -17.45181 -16.47976 -16.41514 -16.18276 -15.47853 -15.09883 -14.71513 -14.50847 -14.36513 -14.27482 -13.54407 -13.25460 -13.13090 -12.98494 -12.91676 -12.72288 -12.64353 -12.56852 -12.20530 -12.02279 -11.85454 -11.77629 -11.73230 -11.43924 -11.19089 -11.04392 -10.58284 -10.18805 -9.85834 -8.15686 -6.26329 1.22427 1.38673 1.40317 1.54052 1.78543 1.95971 2.33903 2.51941 3.13853 3.49061 3.62031 3.74790 3.94499 4.08225 4.27843 4.31374 4.34545 4.39878 4.55103 4.67329 4.69289 4.71169 4.81175 4.90312 4.92574 4.98405 5.09970 5.17384 5.19289 5.37476 5.43829 5.46982 5.70256 5.81147 5.93738 6.19523 6.74147 6.77591 6.88176 7.39910 7.58620 8.90719 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.006006 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.893323 B = 4661.034701 C = 5395.907764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.463 3.537 4 O -0.518 6.518 5 C -0.116 4.116 6 C 0.148 3.852 7 N -0.704 5.704 8 C 0.526 3.474 9 O -0.572 6.572 10 C 0.022 3.978 11 H 0.036 0.964 12 C -0.112 4.112 13 C -0.523 4.523 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -4.575 17.739 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.307 3.693 4 O -0.406 6.406 5 C -0.154 4.154 6 C 0.061 3.939 7 N -0.356 5.356 8 C 0.315 3.685 9 O -0.451 6.451 10 C 0.001 3.999 11 H 0.054 0.946 12 C -0.170 4.170 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.175 4.175 22 C -0.167 4.167 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.147 0.853 26 H 0.089 0.911 27 H 0.165 0.835 28 H 0.108 0.892 29 H 0.241 0.759 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.262 -4.796 17.580 18.512 hybrid contribution -0.176 0.132 -1.354 1.371 sum -3.438 -4.664 16.226 17.230 Atomic orbital electron populations 1.23489 0.75025 1.05462 1.02355 1.86502 1.24943 1.33368 1.84059 1.23951 0.92427 0.81305 0.71644 1.90611 1.67543 1.36704 1.45755 1.21830 0.87148 0.99431 1.07013 1.21295 0.97249 0.89597 0.85758 1.45739 1.46631 1.37623 1.05584 1.21343 0.79978 0.81490 0.85725 1.90485 1.32335 1.34563 1.87723 1.18798 0.95068 0.96286 0.89735 0.94645 1.21479 0.95408 0.98459 1.01697 1.21313 1.20804 1.22432 0.91624 0.92939 1.25652 0.96185 0.95388 1.01033 1.69974 1.33376 1.30319 1.21731 0.85514 0.78704 0.78436 0.79067 1.20153 1.20071 1.19973 1.23284 0.94412 0.99958 0.99847 1.22790 0.96229 0.96562 1.01123 1.23146 0.97873 0.99104 0.95157 0.93107 0.85294 0.91105 0.83501 0.89159 0.75920 0.91126 0.96477 0.94127 0.92673 0.86910 0.93592 0.91220 0.88559 0.90900 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -9.90 10.57 -51.49 -0.54 -10.44 16 3 C 0.46 13.54 7.72 71.23 0.55 14.09 16 4 O -0.52 -16.73 14.54 21.97 0.32 -16.41 16 5 C -0.12 -3.17 5.20 29.84 0.16 -3.02 16 6 C 0.15 4.20 0.23 4.13 0.00 4.20 16 7 N -0.70 -25.25 4.39 -420.55 -1.85 -27.10 16 8 C 0.53 24.32 6.67 87.66 0.58 24.91 16 9 O -0.57 -29.34 13.32 -3.06 -0.04 -29.38 16 10 C 0.02 1.16 2.64 -12.29 -0.03 1.13 16 11 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 12 C -0.11 -5.50 8.87 71.98 0.64 -4.87 16 13 C -0.52 -30.80 8.37 25.60 0.21 -30.59 16 14 H 0.05 3.27 6.75 -2.91 -0.02 3.25 16 15 C 0.02 0.92 5.30 84.66 0.45 1.37 16 16 N -0.91 -52.70 11.32 21.45 0.24 -52.46 16 17 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 C -0.14 -3.54 6.97 31.12 0.22 -3.32 16 22 C -0.13 -2.69 7.99 31.12 0.25 -2.44 16 23 C -0.12 -2.43 6.24 31.12 0.19 -2.23 16 24 H 0.05 1.14 8.13 -2.39 -0.02 1.13 16 25 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.15 2.75 8.06 -2.39 -0.02 2.73 16 28 H 0.09 3.08 6.88 -2.38 -0.02 3.06 16 29 H 0.41 13.69 8.24 -92.71 -0.76 12.93 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 31 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 1.71 7.69 -2.39 -0.02 1.70 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.11 2.25 8.04 -2.39 -0.02 2.23 16 35 H 0.05 1.54 7.31 -2.39 -0.02 1.53 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.07 1.65 8.04 -2.39 -0.02 1.63 16 39 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 Total: -1.00 -70.36 322.23 4.86 -65.50 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.29 Total: 21.64 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.42 Total: 1.03 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.60 Total: -79.55 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.27 Total: -56.23 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.36 4.86 -65.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.663 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds