Wall clock time and date at job start Mon Mar 30 2020 04:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00059 * 2 1 4 4 O 1.20824 * 120.00077 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00052 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47184 * 182.90007 * 5 3 2 7 7 N 1.46496 * 112.84730 * 59.10572 * 6 5 3 8 8 C 1.34774 * 120.00640 * 54.54432 * 7 6 5 9 9 O 1.21280 * 119.99525 * 4.74684 * 8 7 6 10 10 C 1.50696 * 120.00317 * 184.75155 * 8 7 6 11 11 H 1.09007 * 109.46771 * 299.99301 * 10 8 7 12 12 C 1.52994 * 109.47609 * 59.99369 * 10 8 7 13 13 C 1.50703 * 109.47167 * 179.97438 * 10 8 7 14 14 H 1.07999 * 119.99974 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99935 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00617 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99865 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47295 * 120.00647 * 17 15 13 20 20 H 1.48513 * 109.47269 * 240.00263 * 17 15 13 21 21 C 1.53781 * 113.68981 * 190.36729 * 6 5 3 22 22 C 1.53780 * 87.08227 * 139.99346 * 21 6 5 23 23 C 1.53782 * 113.61590 * 287.90466 * 6 5 3 24 24 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47220 * 300.00247 * 1 2 3 26 26 H 1.09003 * 109.47161 * 59.99204 * 1 2 3 27 27 H 1.09002 * 109.46743 * 62.90164 * 5 3 2 28 28 H 1.08996 * 109.47028 * 302.90420 * 5 3 2 29 29 H 0.97003 * 119.99718 * 234.81841 * 7 6 5 30 30 H 1.08994 * 109.47222 * 300.00779 * 12 10 8 31 31 H 1.09000 * 109.46717 * 60.00129 * 12 10 8 32 32 H 1.09001 * 109.47344 * 179.97438 * 12 10 8 33 33 H 0.96995 * 120.00454 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.61809 * 254.54268 * 21 6 5 35 35 H 1.08998 * 113.61337 * 25.44884 * 21 6 5 36 36 H 1.08991 * 113.62251 * 220.02188 * 22 21 6 37 37 H 1.09004 * 113.61241 * 89.11466 * 22 21 6 38 38 H 1.08994 * 113.61310 * 334.48308 * 23 6 5 39 39 H 1.08997 * 113.61179 * 105.38451 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7402 0.0734 7 7 3.4994 3.4230 1.2689 8 6 3.7465 2.9109 2.4908 9 8 4.4553 1.9336 2.6067 10 6 3.1421 3.5525 3.7131 11 1 3.4822 4.5855 3.7869 12 6 1.6165 3.5245 3.6023 13 6 3.5700 2.7933 4.9426 14 1 4.2148 1.9320 4.8483 15 6 3.1384 3.1982 6.1878 16 7 2.3528 4.2466 6.3028 17 14 3.6683 2.2567 7.7117 18 1 4.5446 1.1254 7.3149 19 1 4.4136 3.1645 8.6203 20 1 2.4681 1.7319 8.4117 21 6 5.5032 2.9526 -0.1730 22 6 5.1140 4.2000 -0.9836 23 6 3.7565 3.5204 -1.2292 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 3.9539 0.8262 -0.9141 28 1 3.9580 0.7366 0.8636 29 1 2.9865 4.2416 1.1808 30 1 1.3066 4.0733 2.7130 31 1 1.2765 2.4915 3.5285 32 1 1.1793 3.9882 4.4866 33 1 2.0489 4.5313 7.1788 34 1 6.0665 3.1784 0.7324 35 1 5.9624 2.1674 -0.7736 36 1 5.7052 4.3343 -1.8894 37 1 5.0458 5.1072 -0.3831 38 1 3.7382 2.8904 -2.1185 39 1 2.9096 4.2046 -1.1764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597356308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:19 Heat of formation + Delta-G solvation = -107.434170 kcal Electronic energy + Delta-G solvation = -21924.485286 eV Core-core repulsion = 18639.978338 eV Total energy + Delta-G solvation = -3284.506948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71244 -39.42625 -37.53751 -36.13288 -33.68068 -32.45471 -30.84584 -29.91950 -27.37488 -25.64481 -25.08161 -23.86473 -22.41791 -20.73077 -19.63871 -18.61386 -17.35621 -16.51310 -16.35823 -16.12838 -15.93633 -15.21803 -14.86715 -14.45481 -13.90138 -13.74625 -13.41145 -13.24357 -12.80101 -12.50992 -12.29245 -12.05075 -11.88945 -11.55591 -11.38976 -10.98987 -10.87636 -10.71372 -10.65047 -10.62080 -10.56309 -10.25272 -10.21271 -10.03549 -9.92095 -8.91001 -8.52137 -8.36812 -8.24597 -5.99247 -4.02280 2.48873 2.90909 3.33935 3.41329 3.49368 3.72119 3.88443 4.50051 4.57855 4.69454 4.81943 4.92977 5.17055 5.20285 5.27233 5.33928 5.38512 5.49944 5.61840 5.70810 5.76518 5.94207 6.01512 6.18708 6.26224 6.28513 6.41429 6.60119 6.72520 6.93658 7.00805 7.23876 7.54134 7.81238 7.99807 8.04396 8.22144 8.52263 9.06956 9.29909 9.63141 11.08405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.006374 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.603054 B = 4391.486727 C = 5139.143150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.464 3.536 4 O -0.496 6.496 5 C -0.120 4.120 6 C 0.171 3.829 7 N -0.716 5.716 8 C 0.522 3.478 9 O -0.546 6.546 10 C 0.029 3.971 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.498 4.498 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.135 4.135 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.400 0.600 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -2.987 -16.122 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.382 6.382 5 C -0.158 4.158 6 C 0.083 3.917 7 N -0.369 5.369 8 C 0.313 3.687 9 O -0.423 6.423 10 C 0.008 3.992 11 H 0.068 0.932 12 C -0.186 4.186 13 C -0.537 4.537 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.178 4.178 22 C -0.177 4.177 23 C -0.173 4.173 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.235 0.765 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.094 -3.304 -15.873 16.213 hybrid contribution -0.354 -0.045 0.828 0.902 sum -0.448 -3.349 -15.044 15.419 Atomic orbital electron populations 1.23193 0.76815 1.03247 1.02449 1.86503 1.23143 1.34068 1.84509 1.23728 0.92064 0.81244 0.72256 1.90630 1.67030 1.36044 1.44527 1.21813 0.87767 0.99737 1.06532 1.20836 0.94392 0.89537 0.86963 1.45941 1.57716 1.28943 1.04322 1.21953 0.78860 0.83659 0.84262 1.90475 1.37920 1.27442 1.86425 1.18865 0.93490 0.97403 0.89440 0.93195 1.21682 0.97002 0.99192 1.00682 1.21192 1.29562 1.13535 0.89377 0.90722 1.24954 0.95115 0.95180 0.99073 1.69888 1.34816 1.25271 1.23657 0.86427 0.78386 0.80016 0.82590 1.19569 1.21075 1.21114 1.23276 0.95789 0.97850 1.00841 1.22823 0.96827 0.97910 1.00096 1.23209 0.98294 0.99459 0.96289 0.88517 0.91767 0.92267 0.87653 0.85495 0.76499 0.96671 0.95519 0.89053 0.93085 0.90346 0.89637 0.91428 0.89968 0.89548 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.53 10.57 -39.26 -0.41 -5.95 16 3 C 0.46 7.57 7.72 36.01 0.28 7.84 16 4 O -0.50 -8.84 14.61 -18.75 -0.27 -9.11 16 5 C -0.12 -1.78 4.94 -27.88 -0.14 -1.92 16 6 C 0.17 2.54 0.25 -131.01 -0.03 2.51 16 7 N -0.72 -12.90 4.05 -46.86 -0.19 -13.09 16 8 C 0.52 11.88 6.82 -10.99 -0.07 11.80 16 9 O -0.55 -13.62 13.51 5.56 0.08 -13.54 16 10 C 0.03 0.74 2.64 -92.93 -0.24 0.50 16 11 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 12 C -0.13 -3.10 8.87 37.15 0.33 -2.77 16 13 C -0.50 -14.31 8.37 -34.44 -0.29 -14.60 16 14 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.90 -25.66 11.32 55.43 0.63 -25.03 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.14 -1.84 7.27 -25.92 -0.19 -2.03 16 22 C -0.14 -1.56 7.99 -25.92 -0.21 -1.76 16 23 C -0.13 -1.59 6.62 -25.92 -0.17 -1.76 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.13 2.23 6.29 -51.93 -0.33 1.90 16 29 H 0.40 6.79 8.19 -40.82 -0.33 6.45 16 30 H 0.01 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -32.22 323.12 -6.02 -38.24 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.93 Total: 5.72 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 0.23 Total: 0.83 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.44 Total: -38.11 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.61 Total: -28.60 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.22 -6.02 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.191 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds