Wall clock time and date at job start Mon Mar 30 2020 04:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00059 * 2 1 4 4 O 1.20824 * 120.00077 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00052 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47184 * 182.90007 * 5 3 2 7 7 N 1.46496 * 112.84730 * 59.10572 * 6 5 3 8 8 C 1.34774 * 120.00640 * 54.54432 * 7 6 5 9 9 O 1.21280 * 119.99525 * 4.74684 * 8 7 6 10 10 C 1.50696 * 120.00317 * 184.75155 * 8 7 6 11 11 H 1.09007 * 109.46771 * 299.99301 * 10 8 7 12 12 C 1.52994 * 109.47609 * 59.99369 * 10 8 7 13 13 C 1.50703 * 109.47167 * 179.97438 * 10 8 7 14 14 H 1.07999 * 119.99974 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99935 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00617 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99865 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47295 * 120.00647 * 17 15 13 20 20 H 1.48513 * 109.47269 * 240.00263 * 17 15 13 21 21 C 1.53781 * 113.68981 * 190.36729 * 6 5 3 22 22 C 1.53780 * 87.08227 * 139.99346 * 21 6 5 23 23 C 1.53782 * 113.61590 * 287.90466 * 6 5 3 24 24 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47220 * 300.00247 * 1 2 3 26 26 H 1.09003 * 109.47161 * 59.99204 * 1 2 3 27 27 H 1.09002 * 109.46743 * 62.90164 * 5 3 2 28 28 H 1.08996 * 109.47028 * 302.90420 * 5 3 2 29 29 H 0.97003 * 119.99718 * 234.81841 * 7 6 5 30 30 H 1.08994 * 109.47222 * 300.00779 * 12 10 8 31 31 H 1.09000 * 109.46717 * 60.00129 * 12 10 8 32 32 H 1.09001 * 109.47344 * 179.97438 * 12 10 8 33 33 H 0.96995 * 120.00454 * 179.97438 * 16 15 13 34 34 H 1.09000 * 113.61809 * 254.54268 * 21 6 5 35 35 H 1.08998 * 113.61337 * 25.44884 * 21 6 5 36 36 H 1.08991 * 113.62251 * 220.02188 * 22 21 6 37 37 H 1.09004 * 113.61241 * 89.11466 * 22 21 6 38 38 H 1.08994 * 113.61310 * 334.48308 * 23 6 5 39 39 H 1.08997 * 113.61179 * 105.38451 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7402 0.0734 7 7 3.4994 3.4230 1.2689 8 6 3.7465 2.9109 2.4908 9 8 4.4553 1.9336 2.6067 10 6 3.1421 3.5525 3.7131 11 1 3.4822 4.5855 3.7869 12 6 1.6165 3.5245 3.6023 13 6 3.5700 2.7933 4.9426 14 1 4.2148 1.9320 4.8483 15 6 3.1384 3.1982 6.1878 16 7 2.3528 4.2466 6.3028 17 14 3.6683 2.2567 7.7117 18 1 4.5446 1.1254 7.3149 19 1 4.4136 3.1645 8.6203 20 1 2.4681 1.7319 8.4117 21 6 5.5032 2.9526 -0.1730 22 6 5.1140 4.2000 -0.9836 23 6 3.7565 3.5204 -1.2292 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 3.9539 0.8262 -0.9141 28 1 3.9580 0.7366 0.8636 29 1 2.9865 4.2416 1.1808 30 1 1.3066 4.0733 2.7130 31 1 1.2765 2.4915 3.5285 32 1 1.1793 3.9882 4.4866 33 1 2.0489 4.5313 7.1788 34 1 6.0665 3.1784 0.7324 35 1 5.9624 2.1674 -0.7736 36 1 5.7052 4.3343 -1.8894 37 1 5.0458 5.1072 -0.3831 38 1 3.7382 2.8904 -2.1185 39 1 2.9096 4.2046 -1.1764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597356308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:19 Heat of formation + Delta-G solvation = -127.978411 kcal Electronic energy + Delta-G solvation = -21925.376151 eV Core-core repulsion = 18639.978338 eV Total energy + Delta-G solvation = -3285.397813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97405 -40.74674 -39.07074 -37.34469 -35.76333 -34.05554 -32.40632 -31.55073 -28.39376 -27.23652 -26.64331 -25.26999 -24.00747 -21.92491 -21.21076 -20.00353 -18.57745 -18.29404 -17.81725 -17.62121 -17.42987 -16.45822 -16.41136 -16.12047 -15.50592 -15.08767 -14.68581 -14.53340 -14.39075 -14.25510 -13.53038 -13.31020 -13.15588 -12.98906 -12.91696 -12.73284 -12.62136 -12.59934 -12.20091 -12.03403 -11.81592 -11.75100 -11.71542 -11.40886 -11.22037 -11.04973 -10.58308 -10.17621 -9.83760 -8.16200 -6.26964 1.24298 1.37970 1.39510 1.53344 1.81319 1.94976 2.34202 2.52172 3.13204 3.51561 3.61325 3.75687 3.94738 4.09922 4.27486 4.30295 4.34420 4.40823 4.57968 4.67198 4.67720 4.74141 4.82331 4.90437 4.92674 4.98529 5.10920 5.16992 5.18435 5.37964 5.44174 5.47122 5.69641 5.80889 5.93257 6.19062 6.74643 6.78433 6.88012 7.39352 7.58554 8.90227 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.006374 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.603054 B = 4391.486727 C = 5139.143150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.460 3.540 4 O -0.517 6.517 5 C -0.119 4.119 6 C 0.147 3.853 7 N -0.701 5.701 8 C 0.525 3.475 9 O -0.574 6.574 10 C 0.023 3.977 11 H 0.036 0.964 12 C -0.109 4.109 13 C -0.525 4.525 14 H 0.052 0.948 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.119 4.119 24 H 0.129 0.871 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.405 0.595 30 H 0.040 0.960 31 H 0.012 0.988 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.045 0.955 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -3.316 -17.923 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C 0.304 3.696 4 O -0.406 6.406 5 C -0.157 4.157 6 C 0.060 3.940 7 N -0.352 5.352 8 C 0.314 3.686 9 O -0.453 6.453 10 C 0.002 3.998 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.563 4.563 14 H 0.070 0.930 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.177 4.177 22 C -0.165 4.165 23 C -0.156 4.156 24 H 0.147 0.853 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.116 0.884 29 H 0.241 0.759 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.021 -3.615 -17.710 18.075 hybrid contribution -0.422 0.046 1.353 1.418 sum -0.443 -3.569 -16.357 16.748 Atomic orbital electron populations 1.23467 0.75180 1.05412 1.02196 1.86494 1.24839 1.33552 1.84129 1.24041 0.92652 0.81268 0.71668 1.90610 1.67595 1.36663 1.45686 1.21876 0.86998 0.99574 1.07268 1.21333 0.95901 0.89882 0.86836 1.45695 1.56641 1.28704 1.04186 1.21333 0.78804 0.83323 0.85122 1.90458 1.39237 1.28609 1.87041 1.18790 0.94240 0.96398 0.90398 0.94622 1.21445 0.96152 0.98333 1.00789 1.21324 1.30079 1.13586 0.91335 0.92968 1.25649 0.95006 0.95995 1.01570 1.69971 1.34955 1.25898 1.24532 0.85521 0.78233 0.78723 0.79285 1.20168 1.19895 1.20055 1.23333 0.94065 0.99956 1.00300 1.22780 0.96643 0.96454 1.00635 1.23203 0.98324 0.99017 0.95105 0.85255 0.93511 0.91011 0.83422 0.88450 0.75937 0.94106 0.96844 0.91175 0.92658 0.93614 0.86901 0.88488 0.90943 0.86716 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -10.88 10.57 -51.44 -0.54 -11.42 16 3 C 0.46 14.48 7.72 71.24 0.55 15.03 16 4 O -0.52 -17.92 14.61 21.97 0.32 -17.59 16 5 C -0.12 -3.37 4.94 29.85 0.15 -3.22 16 6 C 0.15 4.16 0.25 4.13 0.00 4.16 16 7 N -0.70 -25.20 4.05 -420.56 -1.70 -26.91 16 8 C 0.53 24.49 6.82 87.66 0.60 25.09 16 9 O -0.57 -29.59 13.51 -3.03 -0.04 -29.64 16 10 C 0.02 1.20 2.64 -12.29 -0.03 1.17 16 11 H 0.04 1.95 8.14 -2.38 -0.02 1.94 16 12 C -0.11 -5.41 8.87 71.98 0.64 -4.77 16 13 C -0.52 -31.10 8.37 25.60 0.21 -30.88 16 14 H 0.05 3.27 6.75 -2.91 -0.02 3.25 16 15 C 0.02 0.95 5.30 84.65 0.45 1.40 16 16 N -0.91 -52.85 11.32 21.45 0.24 -52.61 16 17 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C -0.14 -3.41 7.27 31.12 0.23 -3.18 16 22 C -0.13 -2.48 7.99 31.12 0.25 -2.24 16 23 C -0.12 -2.43 6.62 31.12 0.21 -2.22 16 24 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.21 8.13 -2.38 -0.02 1.19 16 26 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.10 3.43 6.29 -2.39 -0.02 3.42 16 29 H 0.41 13.61 8.19 -92.71 -0.76 12.86 16 30 H 0.04 1.75 7.67 -2.39 -0.02 1.73 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 2.15 8.10 -2.39 -0.02 2.13 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 39 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -71.34 323.12 5.04 -66.31 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.29 Total: 21.87 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.44 Total: 2.22 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.46 Total: -79.52 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -0.26 Total: -58.65 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -71.34 5.04 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.670 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds